LOC118942998 (LOC106576333)


Basic Information

Item Value
gene id LOC118942998
gene name LOC106576333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19393748 ~ 19396068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958466.1
ATGGCCGCGCGTTTTACGGCCGCGCAGGTTCTAGAACAGATCTTGTCCAGCGTGGACCAAGAAGACTACTCGGAttgccaggaggaggaggaggaagaggtttcGGAAGACGAAGACGGGGAGGAATACAACCCCGAGCGCCGCGAGGTCGACGatgcctcttctccctcttctgagGGAGAGCAGCCCGAGGAAGAGCCGCCCGAGGACGAGCACGAGGACGAGCGCGAGGACCGCGGCGAGGAAGAGATCTCCTCGGCCCCGGACCAACGGGAGCCGCCGTTGCTGTCGAAAAACGGCAAAATCGAGTGGTCCCCCGTGGCCTACGGCCGCCGCAGCCGCGGGGCCCTCGCCATCTGCCAGGTCGGGCCGGACCAGACTCCGGGCCCCACGGCCTACGCCGCGACACAGGCCCGCGACATCGCGTCCGCCTTCCACCTGTTTGTCACACCGGCGATAGAAAGGATAATTGTGGAAATGACGAACCTGCACGGGGCCAGAAAATACGGCGACGGCTGGCGACCCATGGACGCCACGGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCGGGCGTCTACAGGTCCCGGGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGAGCCACCATGCCGCTCAAGGTCTTTCACAGGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACGGACAAACTCGCGGCCATACGGGAGGTCTGGGACCTGTGGGAGGCGCGGCTGCCGGCCCTCTACAACCCGGGCCCCGACGTGACGGTGGACGAGCAACTGGTCCCGTTCAGAGGCCGCTGTCCTTTCCGTCAGTACATCCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtGTACACCGGCAAGGCGGCCGGCGGAGGCCCCgagaagaaccaggggatgcgCGTCGTCCTCGATCTGACAACGGGCCTGAGCGGTCGCAACGTCACCTGCGACAACTTCTTCACCTCCTACGACCTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCCAGGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTGGTGTCCTACCTGGCAAAGAGAAACAAGAACGTGCTACTCTTGAGCACGCTGCACACAGAGGGCCACGTCAGCGATCGCCGCGACAGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTGGGCACCTACAGCTGCAGAcggatgactgcccgctggcccctggtcgtCTTCCACAACATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGCAAGCGGAACAAGCGCAGGGTGTTCCtcgagcagctgggaaaggcactggTGAAGCCGCTGATCCAAAGAAGGCAGCATCTGCCCCGCACCGAAGCGGCGTCAGCCCTTGTCAAAGTCCTACAGAGTGCTACGGCGGCTGAGGCGGCCGCGGCCGCGGCGGCGGCTGAGGCGCCTCGTGATCAACAGCGCCAGGGCCCCGCCGCTGACACGGCCGCTGCCCCGCTCGTTGCCCCGGCCACCGGGGCAAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACTCCAAGACACACACGGTGTGCTGCAGGTgtaagaaatacatctgcaaaggctGTTCACACGCCTACTGTCACACTTGCGCACATTGGGCCTTTAGCCAGGACGGGACAGGGTGA

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958466.1 True 1899 mRNA 0.64 2 19393748 19396068

Neighbor

gene id symbol gene type direction distance location
LOC110499916 LOC106609549 coding downstream 30597 19355510 ~ 19363151 (-)
LOC110499914 LOC106609550 coding downstream 39017 19351820 ~ 19354731 (-)
LOC110501020 LOC106609550 coding downstream 45485 19337875 ~ 19348263 (-)
LOC110499911 LOC106576376 coding downstream 72865 19310298 ~ 19320883 (-)
mcat LOC106609558 coding downstream 84184 19307345 ~ 19309564 (-)
LOC118942907 NA coding upstream 289186 19684836 ~ 19700486 (-)
LOC110499938 LOC106609532 coding upstream 426183 19822222 ~ 19831727 (-)
LOC110499939 LOC106609539 coding upstream 437675 19833743 ~ 19842238 (-)
LOC110501023 LOC106576392 coding upstream 447823 19843806 ~ 19858976 (-)
LOC110499951 NA coding upstream 561173 19957241 ~ 19962354 (-)
G1714478 NA non-coding downstream 13401 19373861 ~ 19380347 (-)
G1714447 NA non-coding downstream 64360 19329163 ~ 19329388 (-)
G1714444 NA non-coding downstream 70044 19323477 ~ 19323704 (-)
LOC110501018 LOC106576372 non-coding downstream 132979 19256160 ~ 19294094 (-)
LOC110501016 LOC106609564 non-coding downstream 217595 19174093 ~ 19221344 (-)
G1714475 NA non-coding upstream 4267 19400335 ~ 19453678 (-)
G1714505 NA non-coding upstream 8921 19404989 ~ 19407829 (-)
G1714494 NA non-coding upstream 12600 19408668 ~ 19409411 (-)
G1714474 NA non-coding upstream 21102 19417170 ~ 19420076 (-)
G1714515 NA non-coding upstream 35627 19431695 ~ 19443628 (-)
G1713755 NA other downstream 627944 18765460 ~ 18766379 (-)
G1713719 NA other downstream 724423 18668834 ~ 18669325 (-)
G1713637 NA other downstream 788231 18519287 ~ 18605517 (-)
G1713604 NA other downstream 922931 18470513 ~ 18470817 (-)
G1712424 NA other downstream 2098013 17295519 ~ 17295735 (-)
G1714470 NA other upstream 208103 19599461 ~ 19617954 (-)
G1714755 NA other upstream 506717 19902785 ~ 19903457 (-)
G1715085 LOC106609522 other upstream 598603 19994671 ~ 19995602 (-)
G1715091 LOC106576402 other upstream 615242 20011310 ~ 20025695 (-)

Expression


Co-expression Network