LOC118942907


Basic Information

Item Value
gene id LOC118942907
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19684836 ~ 19700486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038548.1
TGCTGCTCTATTCTGGGACAAGCAGAACCACCCAGCCCATGTAAATCTCAGTTTCACTCCCACAGCTACCAGTCTAGTAGTTAGACTGGGACAGATATGAGTGACTGGTTTTAACCTCGATGGTGGATTCAGATGTAACAGACCTGCTCATCAAGATAGTTCATATATTGCTCGATGATCACATCACACGTTTGGTTGTGAGGTTCATATGGAGATTCGATTTATGGGGCTGATGCAACATCaccattgtttatttttttacatctgTGGATCTGACTCTGATTATGAACAGgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgct
>XR_005038549.1
CAGTGCTGCTCTATTCTGGGACAAGCAGAACCACCCAGCCCATGTAAATCTCAGTTTCACTCCCACAGCTACCAGTCTAGTAGTTAGACTGGGACAGATATGAGTGACTGGTTTTAACCTCGATGGTGGATTCAGATGTAACAGACCTGCTCATCAAGATAGTTCATATATTGCTCGATGATCACATCACACGTTTGGTTGTGAGGTTCATATGGAGATTCGATTTATGGGGCTGATGCAACATCaccattgtttatttttttacatctgTGGATCTGACTCTGATTATGAACAGGTAATGTGTGTTTTAAAACTTCATATAACTTTTATAAGTGAACTTCACGACCATGACAATAAATATTCACAAGTGTGATGAGGATGATGGGGAACTTGTGATCTGAATGATGCTTTGTAAAAATACTCAAAGTTGACCTCTTCTACTGATCAGTGTTCCATGTCACTGTCTTCCCCTCAGCACCTGGGATAAGTTTACATTATAGACATCATCACTGATGTATTTAGCTCAGTGTAATTTAGTTCAGTCAGTGTTCCATGTCAATGTCTCTTCCCCCTAAGCACCTGCAGTAGGTCCCAGCTGTATCAGTACAGtcactgtgcagtctgactgagggaggtttttgtacgtctctgtatcactgtgtgaacacatctttactaatgatgtagtggtaactctgacagtagtaatctcctgcatcttcagcctggactccactgatggtcagagtgaagtcactcccagatccactgcCACTGAATCTAGATGGAGTCCCAGACTGAAGTGTTGTAGCATAGTAAATAAGGAGTTTAGGAGCTCCTCCAGGTTTCTGTTGGTACCAGTCTAGATAGTTATTAGAATACACATTACTGCTGGTTTTACAGTTCAGAGAGACTGTCTGTTCTGGGAGAACAGCTTTCACTACCGGAGTCTGTGTCACAACGTACTGTCCTCTGGATTCT
>TU1964407
GTCTAGTAGTTAGACTGGGACAGATATGAGTGACTGGTTTTAACCTCGATGGTGGATTCAGATGTAACAGACCTGCTCATCAAGATAGTTCATATATTGCTCGATGATCACATCACACGTTTGGTTGTGAGGTTCATATGGAGATTCGATTTATGGGGCTGATGCAACATCaccattgtttatttttttacatctgTGGATCTGACTCTGATTATGAACAGgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccataggaccatgccccaggaatacctgacatgatgactcattgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggt
>TU1964404
actgagggaggtttTTGTACGGCTCTGTATCACTGTGTGAACACATCACCACTGTGGTAACTctgacagtagtaatctcctgcatcttcagcctggactccactgatggtcagagtgaagtcactcccagatccactgcCACTGAATCTAGATGGAGTCCCAGACTGAAGTGTTGTAGCATAGTAAATAAGGAGTTGAGGAGCTCCTCCAGGTTTCTGTTGGTACCAGTCTAGATAGTTATTAGAATACACATTACTGCTGGTTTTACAGTTCAGAGAGACTGTCTGTTCTGGGAGAACAGCTTTCACTACCGGAGTCTGTGTCACAACGTACTGTCCTCTGGATTCTGTAAAATATAGTAAAAACATTTATATGAATTAAATATTACATATAATAATGAATTGTTCTGAATATAAATATTAACATTGATATACCGTACATGTAAAAACTGTAGATTGAATTAAAATTGTAACCTTGGAAGCAGAAAGCAAG

Function

NR:

description
immunoglobulin lambda-1 light chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038548.1 False 346 mRNA 0.45 3 19685254 19689810
XR_005038549.1 False 981 mRNA 0.42 2 19688742 19689813
TU1964407 False 693 lncRNA 0.46 3 19684836 19689739
TU1964404 True 492 lncRNA 0.39 2 19688598 19700486

Neighbor

gene id symbol gene type direction distance location
LOC118942998 LOC106576333 coding downstream 289186 19393748 ~ 19396068 (-)
LOC110499916 LOC106609549 coding downstream 322103 19355510 ~ 19363151 (-)
LOC110499914 LOC106609550 coding downstream 330523 19351820 ~ 19354731 (-)
LOC110501020 LOC106609550 coding downstream 336991 19337875 ~ 19348263 (-)
LOC110499911 LOC106576376 coding downstream 364371 19310298 ~ 19320883 (-)
LOC110499938 LOC106609532 coding upstream 132438 19822222 ~ 19831727 (-)
LOC110499939 LOC106609539 coding upstream 143930 19833743 ~ 19842238 (-)
LOC110501023 LOC106576392 coding upstream 154078 19843806 ~ 19858976 (-)
LOC110499951 NA coding upstream 267428 19957241 ~ 19962354 (-)
LOC110499944 LOC106576402 coding upstream 316687 20006500 ~ 20013479 (-)
G1714490 NA non-coding downstream 31613 19645705 ~ 19653641 (-)
G1714549 NA non-coding downstream 48467 19614010 ~ 19636787 (-)
G1714545 NA non-coding downstream 51638 19594224 ~ 19633616 (-)
G1714540 NA non-coding downstream 53157 19585941 ~ 19632097 (-)
G1714537 NA non-coding downstream 73129 19573750 ~ 19612125 (-)
G1714493 NA non-coding upstream 33403 19723216 ~ 19725258 (-)
G1714578 NA non-coding upstream 34333 19724146 ~ 19727204 (-)
G1714603 LOC106576387 non-coding upstream 66907 19756720 ~ 19756952 (-)
G1714605 LOC106576387 non-coding upstream 68345 19758158 ~ 19758859 (-)
G1714607 NA non-coding upstream 71035 19760848 ~ 19761247 (-)
G1714470 NA other downstream 67300 19599461 ~ 19617954 (-)
G1714475 NA other downstream 231576 19400335 ~ 19453678 (-)
G1713755 NA other downstream 919450 18765460 ~ 18766379 (-)
G1713719 NA other downstream 1015929 18668834 ~ 18669325 (-)
G1713637 NA other downstream 1079737 18519287 ~ 18605517 (-)
G1714755 NA other upstream 212972 19902785 ~ 19903457 (-)
G1715085 LOC106609522 other upstream 304858 19994671 ~ 19995602 (-)
G1715091 LOC106576402 other upstream 321497 20011310 ~ 20025695 (-)
LOC118942908 LOC106609500 other upstream 854276 20544089 ~ 20545776 (-)
LOC100301658 LOC100301658 other upstream 1761304 21451117 ~ 21452490 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location