LOC110499917 (LOC106576387)


Basic Information

Item Value
gene id LOC110499917
gene name LOC106576387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19742124 ~ 19752304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576977.2
aggatGTGGTCTGTCCTAGTTATAAACAACACGggagacttttattttgaagactcATGAATAGTCGTCACACAATAAAATGTTTAACGTTACCAGCCtccaagttagctagctacccaccCAACGTTAACATACGGTCGTAGCAGCAGCTTGGTTTGCTGGTGAAATGGATTCAAAAACTCAAGGTCTcaatctccctctatcctccttgTGTCTCCTGGTTCCACCAATACGCTTGATGTCAGCATCTATGTGGCAAGTGGCTGAGCAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTCCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGCTGGTTCTTGAGTTGTGCTGTGGTAAAGAGGACATGGTGGACCATCAAACCATCCAACGCCACTTGGATAGAATCCAGTCATGCACAGTAAAGCACAAAGCGagagaaaacaagaaagTGGAGGCATCAAAGTCTAACTTTGTGGAGCTGGTTCAAACATTGCTGGAAGACCCAGCGAAGAGGGAACACTTTTTTCAGCTCTCTACATTTTCATTAAAGGAGGTGTTCCCAGTGCAGTACGGTACTAAGTATGACACAGCACTGCAGATTCTGGTGTGGGAGTTCTTCTCCAGATTGGAGGAGCTGCTGCCGGTACCCAGCTTTACACAGACAGCATCTTGTCTCAGCCTTGCATTCTCTGACCTGGAGGAGTGTGTTCagtctgtctctgaccctgagCACCTGAAGACACTGCTACAGCATCAAAGACACCTGGGACACCTTAACAGAGATAATTTGTTCTACGACTCTGACACCATCCTGTCCGCTCTGTCCCTCACTTCCTTGGTAAACTCGAAACAAACTTCAGTGGAGGCTCGAGGTCATGACACTAGGAAGAAAGAACAGGAGGGTAGAGAAGAGTGGCGACCAGAAATCAGTTACAATGGAACTGATCAGGACGTTGAACGACTTGAAGAGGCTGGTGAATCCAGTTCTGGACAGCAGAAACCAGGATCATCACTACACGCTCGTCCAGTGGCCATAGACGAACTGGATAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGAGAGAGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGAGGACAGCAGGAACCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAATACAGAGACCGTCAATCAAGACAACCAAGAAGTACATCTGCTTTAAATGTGGAAAGGGTTTCAGAAGCCCATCGGACCTGAAACGACATAAGGGTGTTCACACAGACATGCAGCCGTTCCATTGCAACCAGTGTGATAAAAGATTCAAAGCGAAGGGTAGTCTAAAACAGCACCAACGGGTTCACTCAGGAGAAAGGCCTTATGATTGCTCACATTGCGGCAGGGGGTTTAGGACATCGGATATCTTAAAATCTCATATACGCATTCATACTGGGGAGCGACCTTATGGGTGTACAATGTGTGGGAAGAGATTTATTCAACGGCAAGTACTAACAAGACACATCAGGATGCACAGTGGAGAGAAACCATACTTGTGTAGCATTTGTGGAAAGACCTTTGCTTGCTCAGGGGAACTGATGGTACACTCAAGGATCCACACAGGGGAACGACCATATCATTGTGAACAATGTGGGAATACTTTTAGTCTAGCAAGTAAACTGAAAGTGCATCAGCGAAGTCATACAGGCGAACGCCCATACCCCTGTACACAGTGCCCCAAAGGCTTCTCCACCTCCACCAGACTAGTGAAACACATGCGAATTCATACTGGGGAGAAACCTTACCCATGTGTAAAGTGTGGCAAAAGATTCTCTGAAAGGGGAAACATGAGAATACATCAACGAATGcatgaaaaagagagaaaagggcgACAAATGTATTGATAAACCATAAGCTGTTGAAATGTTCTTTGTAGATTCTGCTCTATATAGTTCTCTGCTACATTTTCAGGTGATTATGACATGTTTGTAGATCTTCTAATTTGTCACAATACCAGGCGGTGTAACTTCAGAGATGATTGGCAAAATTTGTGTTCTAAATATTGTAACCGTTCTGTAAAATGTTAGTTACGTCTGGTTATATGCGAACAGATCAGATTTTACCCTGAAATAATTTCCCGAGTTCAATGCTACCCAGTTGGAAAACTAACAATGGGCAAAAACACTATTATAAACCACATTTCTAATATAGCAGGGCATCTTAaacaataccctcaaataaaaagtGACATTGTACTTTTGCCTCATATTTATAGTTTACACACCTGGCACCACCTCTGTTGTGTTTCCTATAGAcccaaaatatatttagattaatTGAACAATTGCTTAATTCTATTTAGCCTTTTTCCACTTGTTAActtcactatatacagtgccttggaaagtattcagaccccttaacctttcccacattttgttaggttacagccttattctaaaatggattaaattgtttttccttatctgttttgctttgtcattatggggtattgtgtgtagattgctgagtaaaaaaaaaaagtgtatccattttagaataagactgtaatgtaacaatgtggggAAAGTAgaggggtctgaatgcactgtaggtgaTTTGGTGGTAAACACAGATTCAATAAAAGCACCATTATTGTACTAACAAAGCTGGCTAGTGGTGTGTAGGGTCCAGTGATTTGTGGACATCTATCAGCTTTGCCTTTCTCCCAGTGGCATTTAATGCCTCCATGGAATTTACGGTGAGTTCCAAAAGCATTGGGACAGTTACACATGTTGTGTTGTTttagctctgtactccagcactttcaATTTGAAGtgatacaatgactgaggttaaagtgcagactgtcagctttaatttgagggtatttacatccatatcaggtgaacttTTTAGACATTGCAGCATGTTTTGTACATAATACCCCcatttaggggaccaaaagtattgggacaaattcacttacactgagtgtataaaacatgaaGGACctgttcctaatattgagttgctctGAACTCTGGAGGAGCTGAGAACTCACTGCCATCCAATGAAACAGTAAAGAACTCCTCAGCCAAGACAACGAAGAAGTACATCTGTGTTCCACCAAAGGGAACATGAAAGGCCATAAACGTGTTCACACAGAGGAAAAGCTGTTTCATTGCGACCAGTGTGAGAAATTCAAAAATCTAATGGTACTCTAATACTGCACCAAAGTGTCCACACAGGAGAAAGACCATATATTCTTTGCTCACGTTTTGGCAGGGGGTTTATGACATCTGGGACCTTTAACTTCCCTTATACTTACTCATACTGGGGAGAGACCATTCACCTGTTCTATATGTGGGAGGAGATTTATCCAACAGCAATTACTAACACACCACCTCAGGATGCATACAGGGGAGAAAtcatacttactgtatgtagcgtttgtggaaatacattttatttctCAGGGGCCTTGTTGGTACACTCATGAACACACATGGGTAAATGCCCCCACAGATGTCAACTTTGTGGGAATGTTTAGAATGTATTGGATACTCATGTTGCAGCGAAGGACTCACAGACGAGCTCCCATTCCCCTGCTCTCATTGTGAAAAACGCTTTATCTCAAAAGCGCCCTTAGATGACATGCTTATTCATACTGGAGAGAAACCTCAACCATAAATAAAACTCATAGGCCATAGTTCAGGTAGTTGTCTTGTTCGAACACAACATTTCTTCATAGATGTTCATTTTCAAACTCTGTTTGACTCTCTCAAAGCCTTTGTTAAGTTCTTGGTTGTTTTTCATTTAAATATAGACTCAACCACAATCTtg
>XM_021576979.2
ggatGTGGTCTGTCCTAGTTATAAACAACACGggagacttttattttgaagactcATGAATAGTCGTCACACAATAAAATGTTTAACGTTACCAGCCtccaagttagctagctacccaccCAACGTTAACATACGGTCGTAGCAGCAGCTTGGTTTGCTGGTGAAATGGATTCAAAAACTCAAGGTCTcaatctccctctatcctccttgTGTCTCCTGGTTCCACCAATACGCTTGATGTCAGCATCTATGTGGCAAGTGGCTGAGCAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTCCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGCTGGTTCTTGAGTTGTGCTGTGGTAAAGAGGACATGGTGGACCATCAAACCATCCAACGCCACTTGGATAGAATCCAGTCATGCACAGTAAAGCACAAAGCGagagaaaacaagaaagTGGAGGCATCAAAGTCTAACTTTGTGGAGCTGGTTCAAACATTGCTGGAAGACCCAGCGAAGAGGGAACACTTTTTTCAGGAGGTGTTCCCAGTGCAGTACGGTACTAAGTATGACACAGCACTGCAGATTCTGGTGTGGGAGTTCTTCTCCAGATTGGAGGAGCTGCTGCCGGTACCCAGCTTTACACAGACAGCATCTTGTCTCAGCCTTGCATTCTCTGACCTGGAGGAGTGTGTTCagtctgtctctgaccctgagCACCTGAAGACACTGCTACAGCATCAAAGACACCTGGGACACCTTAACAGAGATAATTTGTTCTACGACTCTGACACCATCCTGTCCGCTCTGTCCCTCACTTCCTTGGTAAACTCGAAACAAACTTCAGTGGAGGCTCGAGGTCATGACACTAGGAAGAAAGAACAGGAGGGTAGAGAAGAGTGGCGACCAGAAATCAGTTACAATGGAACTGATCAGGACGTTGAACGACTTGAAGAGGCTGGTGAATCCAGTTCTGGACAGCAGAAACCAGGATCATCACTACACGCTCGTCCAGTGGCCATAGACGAACTGGATAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGAGAGAGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGAGGACAGCAGGAACCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAATACAGAGACCGTCAATCAAGACAACCAAGAAGTACATCTGCTTTAAATGTGGAAAGGGTTTCAGAAGCCCATCGGACCTGAAACGACATAAGGGTGTTCACACAGACATGCAGCCGTTCCATTGCAACCAGTGTGATAAAAGATTCAAAGCGAAGGGTAGTCTAAAACAGCACCAACGGGTTCACTCAGGAGAAAGGCCTTATGATTGCTCACATTGCGGCAGGGGGTTTAGGACATCGGATATCTTAAAATCTCATATACGCATTCATACTGGGGAGCGACCTTATGGGTGTACAATGTGTGGGAAGAGATTTATTCAACGGCAAGTACTAACAAGACACATCAGGATGCACAGTGGAGAGAAACCATACTTGTGTAGCATTTGTGGAAAGACCTTTGCTTGCTCAGGGGAACTGATGGTACACTCAAGGATCCACACAGGGGAACGACCATATCATTGTGAACAATGTGGGAATACTTTTAGTCTAGCAAGTAAACTGAAAGTGCATCAGCGAAGTCATACAGGCGAACGCCCATACCCCTGTACACAGTGCCCCAAAGGCTTCTCCACCTCCACCAGACTAGTGAAACACATGCGAATTCATACTGGGGAGAAACCTTACCCATGTGTAAAGTGTGGCAAAAGATTCTCTGAAAGGGGAAACATGAGAATACATCAACGAATGcatgaaaaagagagaaaagggcgACAAATGTATTGATAAACCATAAGCTGTTGAAATGTTCTTTGTAGATTCTGCTCTATATAGTTCTCTGCTACATTTTCAGGTGATTATGACATGTTTGTAGATCTTCTAATTTGTCACAATACCAGGCGGTGTAACTTCAGAGATGATTGGCAAAATTTGTGTTCTAAATATTGTAACCGTTCTGTAAAATGTTAGTTACGTCTGGTTATATGCGAACAGATCAGATTTTACCCTGAAATAATTTCCCGAGTTCAATGCTACCCAGTTGGAAAACTAACAATGGGCAAAAACACTATTATAAACCACATTTCTAATATAGCAGGGCATCTTAaacaataccctcaaataaaaagtGACATTGTACTTTTGCCTCATATTTATAGTTTACACACCTGGCACCACCTCTGTTGTGTTTCCTATAGAcccaaaatatatttagattaatTGAACAATTGCTTAATTCTATTTAGCCTTTTTCCACTTGTTAActtcactatatacagtgccttggaaagtattcagaccccttaacctttcccacattttgttaggttacagccttattctaaaatggattaaattgtttttccttatctgttttgctttgtcattatggggtattgtgtgtagattgctgagtaaaaaaaaaaagtgtatccattttagaataagactgtaatgtaacaatgtggggAAAGTAgaggggtctgaatgcactgtaggtgaTTTGGTGGTAAACACAGATTCAATAAAAGCACCATTATTGTACTAACAAAGCTGGCTAGTGGTGTGTAGGGTCCAGTGATTTGTGGACATCTATCAGCTTTGCCTTTCTCCCAGTGGCATTTAATGCCTCCATGGAATTTACGGTGAGTTCCAAAAGCATTGGGACAGTTACACATGTTGTGTTGTTttagctctgtactccagcactttcaATTTGAAGtgatacaatgactgaggttaaagtgcagactgtcagctttaatttgagggtatttacatccatatcaggtgaacttTTTAGACATTGCAGCATGTTTTGTACATAATACCCCcatttaggggaccaaaagtattgggacaaattcacttacactgagtgtataaaacatgaaGGACctgttcctaatattgagttgctctGAACTCTGGAGGAGCTGAGAACTCACTGCCATCCAATGAAACAGTAAAGAACTCCTCAGCCAAGACAACGAAGAAGTACATCTGTGTTCCACCAAAGGGAACATGAAAGGCCATAAACGTGTTCACACAGAGGAAAAGCTGTTTCATTGCGACCAGTGTGAGAAATTCAAAAATCTAATGGTACTCTAATACTGCACCAAAGTGTCCACACAGGAGAAAGACCATATATTCTTTGCTCACGTTTTGGCAGGGGGTTTATGACATCTGGGACCTTTAACTTCCCTTATACTTACTCATACTGGGGAGAGACCATTCACCTGTTCTATATGTGGGAGGAGATTTATCCAACAGCAATTACTAACACACCACCTCAGGATGCATACAGGGGAGAAAtcatacttactgtatgtagcgtttgtggaaatacattttatttctCAGGGGCCTTGTTGGTACACTCATGAACACACATGGGTAAATGCCCCCACAGATGTCAACTTTGTGGGAATGTTTAGAATGTATTGGATACTCATGTTGCAGCGAAGGACTCACAGACGAGCTCCCATTCCCCTGCTCTCATTGTGAAAAACGCTTTATCTCAAAAGCGCCCTTAGATGACATGCTTATTCATACTGGAGAGAAACCTCAACCATAAATAAAACTCATAGGCCATAGTTCAGGTAGTTGTCTTGTTCGAACACAACATTTCTTCATAGATGTTCATTTTCAAACTCTGTTTGACTCTCTCAAAGCCTTTGTTAAGTTCTTGGTTGTTTTTCATTTAAATATAGACTCAACCACAATCTtg

Function

NR:

description
zinc finger protein 239-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576977.2 False 3932 mRNA 0.43 8 19742124 19752304
XM_021576979.2 True 3910 mRNA 0.43 8 19742125 19752304

Neighbor

gene id symbol gene type direction distance location
LOC118942906 NA coding upstream 32362 19709214 ~ 19709762 (+)
LOC110499932 NA coding upstream 310625 19425393 ~ 19431499 (+)
LOC118942905 NA coding upstream 354052 19384992 ~ 19388072 (+)
LOC110499913 NA coding upstream 404473 19331964 ~ 19337651 (+)
bik LOC106609559 coding upstream 436041 19302368 ~ 19306083 (+)
LOC110499934 LOC106576387 coding downstream 3605 19755909 ~ 19761293 (+)
LOC110499918 LOC106609536 coding downstream 11358 19763662 ~ 19784185 (+)
LOC110499935 LOC106609535 coding downstream 45175 19797479 ~ 19806872 (+)
LOC110499937 LOC106609533 coding downstream 58247 19810551 ~ 19818578 (+)
LOC110499940 LOC106609531 coding downstream 108850 19861154 ~ 19885723 (+)
G1714210 NA non-coding upstream 6255 19712705 ~ 19735869 (+)
G1714184 NA non-coding upstream 14363 19631947 ~ 19727761 (+)
G1714115 NA non-coding upstream 52792 19688596 ~ 19689332 (+)
G1714196 NA non-coding upstream 59090 19677937 ~ 19683034 (+)
G1714172 NA non-coding upstream 148693 19591491 ~ 19593431 (+)
G1714612 NA non-coding downstream 32078 19784382 ~ 19784728 (+)
G1714613 NA non-coding downstream 34375 19786679 ~ 19787340 (+)
G1714619 NA non-coding downstream 40584 19792888 ~ 19793165 (+)
G1714620 NA non-coding downstream 40953 19793257 ~ 19793527 (+)
G1714090 NA other upstream 118210 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1004688 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1241250 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1474616 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2073538 17666280 ~ 17668586 (+)
nmes1 nmes1 other downstream 356894 20109125 ~ 20113891 (+)
G1715392 NA other downstream 806118 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1246294 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2423659 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2966615 22718919 ~ 22784445 (+)

Expression


Co-expression Network