LOC110499934 (LOC106576387)


Basic Information

Item Value
gene id LOC110499934
gene name LOC106576387
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19755909 ~ 19761293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470045.2
ctacatctagtggagagagattgtaagacataAATAGTAGCTTTACGTctagatgtaacggagggtccgttttttcatcttttctccaatactatagagccattaccatgtcgatcaacgcttgaatagaaacctagttcacacccccgattttaaAGTCGCTACATACATTCCCATTCGTTTTCTTTGTAGCTtcgtttgaatgtcgcggttgTGCACATTtatacggaatggggtgagtttacgttacctAGTTGCCAGCCAGCTAGCTACTGCTATCATGACTAGTTATGTGTGTAATACCATAGACTTATAGGCCGGTAATTATCGGTATTATCAAAGAAGATTATCTAATAGTTCGACTGAAGAAACCACTATTCTTGGCACTGGGTTCGCGGTTCAAATGAGTGCAATATCAACGCCAGCATCATCAGTACCAACATACATCAATTTCAGCAGACAGAGTTGAGAGTCCTGATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGACAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGATTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGAGTGAGAAGTGGGAGGGTGGAGAAGGAATGGAGGCATGGGTGTTCAGAAATGATCTTAGTCCAATAACTATTATTCTCATAAAATCTACTTTCAGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTCCAACTTCCAACATCCAATGTCTTCAGTACATGCTGTGCATGAGGATGTATGTAACTTTCGGTGTCTAAAGTAGTCTGGATGCTGTATCATTCATTTTACATGCCCAGTCACAGAGTAGAAATTAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCCGGTCAAAACCCTGCTCAAAGACCCTTCTCAGAAGAAGCACTTCTTCCAGGTGGGGTTCCCAATATGTTACACCCTCGGTATGACACAGCACTGCAGATACTGGTGTTGGGAGTTTCTCTCCTGATTGGAGGAGCTGCTGCCTGTACCAGACCTCAGAGACAGCATCTTGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAAGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGTCTCGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGTAGGATGATGGAAGTGAAAGAAATGAAGACCCTGAGAGAGGATTGAAGGATGAGGATGATGCAAACTGGACTTCCCATCTGAGTGAACCAGAGGACTTGGATGAACTGGCTAGTGGCATGCCCTCCGAGGTCTTCTCCTGCCCCCAGTGGTGAACCTTGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGACAGCAGGAGCCTGAGAACTCACTGCCATCCAGTCAAACTGCCAAGAGCTCCTCAGCCAAGAGCTCCTCAGCCAAGAGAATGAATAAGAACACCTGAACATCTGACCTGAAACGACACCAAAGTGTTCACACCAGGGTGCACCCGTTCTGTTGCAACCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAACTGCACAAGAAAAGTCACGAAGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGTAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGCACCCACACCGGAGAGCGGCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTTAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGAGAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCAGGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAATGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCACCATTGCTGCCACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAactcataaaaaaatgtaattggatCTTTGTAAGACTAATGGAATTTGTACGCTATTGTAGTGTTTCTCCTTGAGCTCAAAGCCAAAAGCAAGAAAAATATGAAATTGCATTATAGGTAGTGTACATCGCCCTGAGAAGGTTTTCACACTGACTAAGTAGCCATTCTGTTATTTTCCCCTTGGAAAGGTGATCGGTTGTTCAGGAACTTTGGGCACAGACTTCACAATGACACTGAggttcagacctgggttcaaatactatttcaaatacCTCAACTTTCCCCTACATTGTCCAAGTAAGTATTcagatatattttatttcagaagacaagtagttgaatattttaatgtatttgaaaatactaaaatacactgactcaaatacactcccatgcattttacccaggtatttgaaaatagtatttaaaataagtgtttaaAAATACTCttactgtttttttttacaaatagccATTCAAATAGAAGTacttgttttgtttttgaaaatgCTCAAATACactgaaaaatgtatttgaaataccAGATATTGAAATgcatatttgaacccaggtctgattgtAATAAAAATCACTCATTAATTGTCTGTGGTGACTCTAATTAGTAAATTAACTAATACTACAGCATGTGTATGTATATTATGTACATGATGCTACATTTATTATCTGTCATACACTTAATAAAAACTTTATGTGTAGGAAAGGATTTACTCGGATGAGCAACATGAGAATATGTTTGAAAACTCGTAAGACATAAACTCATTTGTCAGACTGAAGTGATTTTCTTTTACACTCGTGTTAGGTGTTTGTATTTCTCCTTGAGCTCATTGTATTATAGGTAAtgtacaatgaacaaaaatataaatgcaacaagtgttggtttcatgagctgaaataaaagatcccagaaatcttCA
>XR_005038550.1
ctacatctagtggagagagattgtaagacataAATAGTAGCTTTACGTctagatgtaacggagggtccgttttttcatcttttctccaatactatagagccattaccatgtcgatcaacgcttgaatagaaacctagttcacacccccgattttaaAGTCGCTACATACATTCCCATTCGTTTTCTTTGTAGCTtcgtttgaatgtcgcggttgTGCACATTtatacggaatggggtgagtttacgttacctAGTTGCCAGCCAGCTAGCTACTGCTATCATGACTAGTTATGTGTGTAATACCATAGACTTATAGGCCGGTAATTATCGGTATTATCAAAGAAGATTATCTAATAGTTCGACTGAAGAAACCACTATTCTTGGCACTGGGTTCGCGGTTCAAATGAGTGCAATATCAACGCCAGCATCATCAGTACCAACATACATCAATTTCAGCAGACAGAGTTGAGAGTCCTGATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGACAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGATTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGAGTGAGAAGTGGGAGGGTGGAGAAGGAATGGAGGCATGGGTGTTCAGAAATGATCTTAGTCCAATAACTATTATTCTCATAAAATCTACTTTCAGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTCCAACTTCCAACATCCAATGTCTTCAGTACATGCTGTGCATGAGGATGTATGTAACTTTCGGTGTCTAAAGTAGTCTGGATGCTGTATCATTCATTTTACATGCCCAGTCACAGAGTAGAAATTAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCCGGTCAAAACCCTGCTCAAAGACCCTTCTCAGAAGAAGCACTTCTTCCAGGTTGGAAATACCCTAATGAATCATAGTTGTCGCTTTCAGAGTCAATAGGACAGCATGTTCCAGCAATGTAAAACTCAGTAGTGAAATGTTGCTTGTTTTACTGTAACTGATGAAAGGCCATACAAAATGAAAAATCCAGCAATGTGTTGGTTTCAACTAcgcatgtttttatttttcactCTCAGGTGGGGTTCCCAATATGTTACACCCTCGGTATGACACAGCACTGCAGATACTGGTGTTGGGAGTTTCTCTCCTGATTGGAGGAGCTGCTGCCTGTACCAGACCTCAGAGACAGCATCTTGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAAGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGTCTCGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGTAGGATGATGGAAGTGAAAGAAATGAAGACCCTGAGAGAGGATTGAAGGATGAGGATGATGCAAACTGGACTTCCCATCTGAGTGAACCAGAGGACTTGGATGAACTGGCTAGTGGCATGCCCTCCGAGGTCTTCTCCTGCCCCCAGTGGTGAACCTTGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGACAGCAGGAGCCTGAGAACTCACTGCCATCCAGTCAAACTGCCAAGAGCTCCTCAGCCAAGAGCTCCTCAGCCAAGAGAATGAATAAGAACACCTGAACATCTGACCTGAAACGACACCAAAGTGTTCACACCAGGGTGCACCCGTTCTGTTGCAACCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAACTGCACAAGAAAAGTCACGAAGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGTAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGCACCCACACCGGAGAGCGGCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTTAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGAGAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCAGGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAATGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCACCATTGCTGCCACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAactcataaaaaaatgtaattggatCTTTGTAAGACTAATGGAATTTGTACGCTATTGTAGTGTTTCTCCTTGAGCTCAAAGCCAAAAGCAAGAAAAATATGAAATTGCATTATAGGTAGTGTACATCGCCCTGAGAAGGTTTTCACACTGACTAAGTAGCCATTCTGTTATTTTCCCCTTGGAAAGGTGATCGGTTGTTCAGGAACTTTGGGCACAGACTTCACAATGACACTGAggttcagacctgggttcaaatactatttcaaatacCTCAACTTTCCCCTACATTGTCCAAGTAAGTATTcagatatattttatttcagaagacaagtagttgaatattttaatgtatttgaaaatactaaaatacactgactcaaatacactcccatgcattttacccaggtatttgaaaatagtatttaaaataagtgtttaaAAATACTCttactgtttttttttacaaatagccATTCAAATAGAAGTacttgttttgtttttgaaaatgCTCAAATACactgaaaaatgtatttgaaataccAGATATTGAAATgcatatttgaacccaggtctgattgtAATAAAAATCACTCATTAATTGTCTGTGGTGACTCTAATTAGTAAATTAACTAATACTACAGCATGTGTATGTATATTATGTACATGATGCTACATTTATTATCTGTCATACACTTAATAAAAACTTTATGTGTAGGAAAGGATTTACTCGGATGAGCAACATGAGAATATGTTTGAAAACTCGTAAGACATAAACTCATTTGTCAGACTGAAGTGATTTTCTTTTACACTCGTGTTAGGTGTTTGTATTTCTCCTTGAGCTCATTGTATTATAGGTAAtgtacaatgaacaaaaatataaatgcaacaagtgttggtttcatgagctgaaataaaagatcccagaaatcttCA
>XR_005038551.1
ctacatctagtggagagagattgtaagacataAATAGTAGCTTTACGTctagatgtaacggagggtccgttttttcatcttttctccaatactatagagccattaccatgtcgatcaacgcttgaatagaaacctagttcacacccccgattttaaAGTCGCTACATACATTCCCATTCGTTTTCTTTGTAGCTtcgtttgaatgtcgcggttgTGCACATTtatacggaatgggATTTCAGCAGACAGAGTTGAGAGTCCTGATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGACAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGATTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGAGTGAGAAGTGGGAGGGTGGAGAAGGAATGGAGGCATGGGTGTTCAGAAATGATCTTAGTCCAATAACTATTATTCTCATAAAATCTACTTTCAGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTCCAACTTCCAACATCCAATGTCTTCAGTACATGCTGTGCATGAGGATGTATGTAACTTTCGGTGTCTAAAGTAGTCTGGATGCTGTATCATTCATTTTACATGCCCAGTCACAGAGTAGAAATTAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCCGGTCAAAACCCTGCTCAAAGACCCTTCTCAGAAGAAGCACTTCTTCCAGGTTGGAAATACCCTAATGAATCATAGTTGTCGCTTTCAGAGTCAATAGGACAGCATGTTCCAGCAATGTAAAACTCAGTAGTGAAATGTTGCTTGTTTTACTGTAACTGATGAAAGGCCATACAAAATGAAAAATCCAGCAATGTGTTGGTTTCAACTAcgcatgtttttatttttcactCTCAGGTGGGGTTCCCAATATGTTACACCCTCGGTATGACACAGCACTGCAGATACTGGTGTTGGGAGTTTCTCTCCTGATTGGAGGAGCTGCTGCCTGTACCAGACCTCAGAGACAGCATCTTGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAAGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGTCTCGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGTAGGATGATGGAAGTGAAAGAAATGAAGACCCTGAGAGAGGATTGAAGGATGAGGATGATGCAAACTGGACTTCCCATCTGAGTGAACCAGAGGACTTGGATGAACTGGCTAGTGGCATGCCCTCCGAGGTCTTCTCCTGCCCCCAGTGGTGAACCTTGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGACAGCAGGAGCCTGAGAACTCACTGCCATCCAGTCAAACTGCCAAGAGCTCCTCAGCCAAGAGCTCCTCAGCCAAGAGAATGAATAAGAACACCTGAACATCTGACCTGAAACGACACCAAAGTGTTCACACCAGGGTGCACCCGTTCTGTTGCAACCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAACTGCACAAGAAAAGTCACGAAGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGTAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGCACCCACACCGGAGAGCGGCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTTAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGAGAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCAGGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAATGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCACCATTGCTGCCACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAactcataaaaaaatgtaattggatCTTTGTAAGACTAATGGAATTTGTACGCTATTGTAGTGTTTCTCCTTGAGCTCAAAGCCAAAAGCAAGAAAAATATGAAATTGCATTATAGGTAGTGTACATCGCCCTGAGAAGGTTTTCACACTGACTAAGTAGCCATTCTGTTATTTTCCCCTTGGAAAGGTGATCGGTTGTTCAGGAACTTTGGGCACAGACTTCACAATGACACTGAggttcagacctgggttcaaatactatttcaaatacCTCAACTTTCCCCTACATTGTCCAAGTAAGTATTcagatatattttatttcagaagacaagtagttgaatattttaatgtatttgaaaatactaaaatacactgactcaaatacactcccatgcattttacccaggtatttgaaaatagtatttaaaataagtgtttaaAAATACTCttactgtttttttttacaaatagccATTCAAATAGAAGTacttgttttgtttttgaaaatgCTCAAATACactgaaaaatgtatttgaaataccAGATATTGAAATgcatatttgaacccaggtctgattgtAATAAAAATCACTCATTAATTGTCTGTGGTGACTCTAATTAGTAAATTAACTAATACTACAGCATGTGTATGTATATTATGTACATGATGCTACATTTATTATCTGTCATACACTTAATAAAAACTTTATGTGTAGGAAAGGATTTACTCGGATGAGCAACATGAGAATATGTTTGAAAACTCGTAAGACATAAACTCATTTGTCAGACTGAAGTGATTTTCTTTTACACTCGTGTTAGGTGTTTGTATTTCTCCTTGAGCTCATTGTATTATAGGTAAtgtacaatgaacaaaaatataaatgcaacaagtgttggtttcatgagctgaaataaaagatcccagaaatcttCA
>TU1964541
AGGTTTTCACACTGACTAAGTAGCCATTCTGTTATTTTCCCCTTGGAAAGGTGATCGGTTGTTCAGGAACTTTGGGCACAGACTTCACAATGACACTGAggttcagacctgggttcaaatactatttcaaatacCTCAACTTTCCCCTACATTGTCCAAGTAAGTATTcagatatattttatttcagaagacaagtagttgaatattttaatgtatttgaaaatactaaaatacactgactcaaatacactcccatgcattttacccaggtatttgaaaatagtatttaaaataagtgtttaaAAATACTCttactgtttttttttacaaatagccATTCAAATAGAAGTacttgttttgtttttgaaaatgCTCAAATACactgaaaaatgtatttgaaataccA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470045.2 False 3312 mRNA 0.43 7 19755909 19761293
XR_005038550.1 False 3497 mRNA 0.42 6 19755909 19761293
XR_005038551.1 False 3283 mRNA 0.42 6 19755909 19761293
TU1964541 True 406 lncRNA 0.31 1 19760497 19760902

Neighbor

gene id symbol gene type direction distance location
LOC110499917 LOC106576387 coding upstream 3605 19742124 ~ 19752304 (+)
LOC118942906 NA coding upstream 46147 19709214 ~ 19709762 (+)
LOC110499932 NA coding upstream 324410 19425393 ~ 19431499 (+)
LOC118942905 NA coding upstream 367837 19384992 ~ 19388072 (+)
LOC110499913 NA coding upstream 418258 19331964 ~ 19337651 (+)
LOC110499918 LOC106609536 coding downstream 2369 19763662 ~ 19784185 (+)
LOC110499935 LOC106609535 coding downstream 36186 19797479 ~ 19806872 (+)
LOC110499937 LOC106609533 coding downstream 49258 19810551 ~ 19818578 (+)
LOC110499940 LOC106609531 coding downstream 99861 19861154 ~ 19885723 (+)
LOC110499945 LOC106609530 coding downstream 131184 19892477 ~ 19900807 (+)
G1714090 NA non-coding upstream 1300 19384972 ~ 19754609 (+)
G1714210 NA non-coding upstream 20040 19712705 ~ 19735869 (+)
G1714184 NA non-coding upstream 28148 19631947 ~ 19727761 (+)
G1714115 NA non-coding upstream 66577 19688596 ~ 19689332 (+)
G1714196 NA non-coding upstream 72875 19677937 ~ 19683034 (+)
G1714612 NA non-coding downstream 23089 19784382 ~ 19784728 (+)
G1714613 NA non-coding downstream 25386 19786679 ~ 19787340 (+)
G1714619 NA non-coding downstream 31595 19792888 ~ 19793165 (+)
G1714620 NA non-coding downstream 31964 19793257 ~ 19793527 (+)
G1714654 cl011 non-coding downstream 88074 19849367 ~ 19851600 (+)
G1713384 NA other upstream 1018473 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1255035 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1488401 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2087323 17666280 ~ 17668586 (+)
nmes1 nmes1 other downstream 347905 20109125 ~ 20113891 (+)
G1715392 NA other downstream 797129 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1237305 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2414670 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2957626 22718919 ~ 22784445 (+)

Expression


Co-expression Network