LOC110499918 (LOC106609536)


Basic Information

Item Value
gene id LOC110499918
gene name LOC106609536
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19763662 ~ 19784185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576981.2
ATCGGTCACACCCATATTTACATGGTCCACTGGCACTGGATAGGCCTACATCCTTGCTGGTGAAACAGTAAAAGGCACAGATTCTACTGGCTTTGGGATACAGTCCTGCATTACTTCAAACACTCAAAGTTTGATTTAATAGAATTGCAAACTTTGGGAGGAACAATGCGTTTTTTCACAAAAATCCGTCCTTCCATCACTCTGCCACTTTTTGGAATCGTACTTTTGGGAGTCCTGGTTTTAACATATTGTTACTCATCATTTGGTGAGGTGAAAAATAAGGATGTCAGAATTCTAGAAGTTTTGGGGTTGTGTCAGCAGGACCCTGTCAATTTCAGGCGGGAAAACTGTAGTTGTAGGACCCGGGACATGCTGTCCCCACAGGGACTCCTGTATAAGCAGCCCAGTGTGTTAAAGGGGCGCACCAATGTGGTAACTGTTACCCCTTGGTTGGCACCAATTGTCTGGGAAGGCACCTTTAATCCCTTGATTGTTGACAGCATTTACAAGCCTATGCACCTCAGCATTGCCACAACTGTCTTTGCGGTTGGCAAGTATGTGCGCTTCCTGCGTGACTTCCTAGAGACTGCCGAGAAGCATTTCATGGTGGATTTCAAAGTGCACTACTACATCTTCACTGACCGGAGGGAAGATGTGCCAGCGGTGGTCCTCGCTCCCGGTAGAAATGTAACCATCATCCCAGTCCCTGGCTCCAACCGCTGGCAGGAGATCTCCTCCAGGAGGATGGAGATGATCCAGACCGCCATCGAGAACCAGATAGGCAAGGAGGCGGACTACATCTTTTGCTTGGATGTGGACACGAAGTTCCACGGACGGTGGGGGGCAGAAACATTGAGCAGGCTGGTGGCCACTATTCACCCAGGTTACTATGAGCAGACCCACGAGCACTACCCTTACGAACGCCGTCCTGCCTCACGGGCCTACATCCCCGCGGGGGAAGGAGACTACTACTATGGAGGCGCCACCATCGCTGGCTATGTGAGGGACGTGCACAAGCTGACAAAGTACTGCCGCGAGCAGCTGGAGGCCGATGCCGCCAACTCCATCGAGGCGGCATGGCAGGAGGAAAGCCACCTGAACAGATATCTCCTTTACAACAAGCCCACTAAGATTCTGTCTCCGGAATACCTGTGGCAGGACTTCAAGGCCAAGAACAACGAGGTGCAAATAATCCGCTTCTCTCAGGTCAACAAGAACTATGCAGAGGTTCGGCCCAACGTGAAGAAAAGAAAGTAATGCTGTGGCCACTGTCGCACCAAGATTCAGGATCTAGGCCAGGGAGGAGGATACTGCTATTTGTATACATTGAAGGTGGCTGGATCAGTAAACAAGCTTATGTTGTTCCGCTTTTCTCTCAATTAGTTTATATCCTTTACCGCTAAAGATGTATTATAGACATGAAGGGCTGTTTCCATGTAGAAATGTTTGTCAAAGGAGCAGAAGTGTGGATAGAGGGTGAGTTTGTGAAATGAATGTGCAATTAATACTGATAATACATAATATTTGTGA

Function

NR:

description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00722 GBGT1; globoside alpha-N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576981.2 True 1530 mRNA 0.49 7 19763662 19784185

Neighbor

gene id symbol gene type direction distance location
LOC110499934 LOC106576387 coding upstream 2369 19755909 ~ 19761293 (+)
LOC110499917 LOC106576387 coding upstream 11358 19742124 ~ 19752304 (+)
LOC118942906 NA coding upstream 53900 19709214 ~ 19709762 (+)
LOC110499932 NA coding upstream 332163 19425393 ~ 19431499 (+)
LOC118942905 NA coding upstream 375590 19384992 ~ 19388072 (+)
LOC110499935 LOC106609535 coding downstream 13294 19797479 ~ 19806872 (+)
LOC110499937 LOC106609533 coding downstream 26366 19810551 ~ 19818578 (+)
LOC110499940 LOC106609531 coding downstream 76969 19861154 ~ 19885723 (+)
LOC110499945 LOC106609530 coding downstream 108292 19892477 ~ 19900807 (+)
LOC110499950 LOC106609529 coding downstream 119400 19903585 ~ 19907504 (+)
G1714090 NA non-coding upstream 9053 19384972 ~ 19754609 (+)
G1714210 NA non-coding upstream 27793 19712705 ~ 19735869 (+)
G1714184 NA non-coding upstream 35901 19631947 ~ 19727761 (+)
G1714115 NA non-coding upstream 74330 19688596 ~ 19689332 (+)
G1714612 NA non-coding downstream 197 19784382 ~ 19784728 (+)
G1714613 NA non-coding downstream 2494 19786679 ~ 19787340 (+)
G1714619 NA non-coding downstream 8703 19792888 ~ 19793165 (+)
G1714620 NA non-coding downstream 9072 19793257 ~ 19793527 (+)
G1714654 cl011 non-coding downstream 65182 19849367 ~ 19851600 (+)
G1713384 NA other upstream 1026226 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1262788 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1496154 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2095076 17666280 ~ 17668586 (+)
nmes1 nmes1 other downstream 325013 20109125 ~ 20113891 (+)
G1715392 NA other downstream 774237 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1214413 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2391778 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2934734 22718919 ~ 22784445 (+)

Expression


Co-expression Network