LOC110499935 (LOC106609535)


Basic Information

Item Value
gene id LOC110499935
gene name LOC106609535
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19797479 ~ 19806872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576986.2
ttgcagagtccatgccccgacgaattgaggctgttctgaggacagggggtgcaactcaatattaggaagAttcacccatccctctctcctccctgcgcCTTTTGGTTCCACCTCTACGGCTGATGTCTGCATTTATGTGGCAGGTAGCACAACAGAGGGCCATCAAGCACTATGGAAAATTAGAGGAGTTTGTGACCGTGGTAACACAAACTGTCCCAGAACTTATGACTGACAGACAAAGGACCCTCCTTATTTTGGGTCTGAGAGCAAGGGTAAACCCTGTCAGCCTCCGGACCCTCCTTTATAGAATAAAGTCTTCTCAACATGCACAGTCCAATGATACAGGCATGGAATCACCTGAAGCTAACTTTGCCAAGCTCACCCAAAGCTTGCTTATAGACCCGGTTGAGCGTGAACACTTCGTCCAAGTGGTGTTTCCTGAAGAATTCAGACCTGATTTTGACCAAGTGCTTCAGGAACTGGTCTGTGACTTCCTCACTCGGCTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCTGGCTCATCTGGCCTGGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGGACATTGTACACAAACATTTCCTCCTCTGACATTCCTCAGGAATCAGATATTGAATCCGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGTTGTGGGGATGAGGACTGGGATACAAAGCAGAGACTGCCAAAGGATGGAGTTGGCATCACATTTAGTGGAAATGGGGAGCACAAGAGATATTATAGGCTGTGATGAAACCTGTGATGAAGGGAATGAAGATGACATTGATGTAGAGGACGACCCAAAACAGAAAAGGGCTGGTTCTGGTCATTCTCCTACCAGTGTCATGCAAGGTGGTGATACAGACACTGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTTTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATGAACATTTTCCACCAGTGTCCCCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGTGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGTTCCAAGTGCTGGAGAGAGTTTGGTTCTCTGCGTGAGAAATTGAGACACCAGTGTCCACACAACGAAGTCATGTACATCTGTCCACAGAGCGGGAAGAGTTTTAAGACGCCACAGCAACAACCATTCCAGTGCCGTCATTGCGCAATGGCCTTTTCTGAAATGGATCAACTGCATGCTCACGAAAAAATTCACGGAATCCCCCAAACTCTTGACTGTCACACATGTGGAATTACCTTCAGCAACTTGCCCAGTCTAGTGCACCACGTGGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCttccaaagaagaagaaaggaTTGCAGCTTCCGAAAACTCACCACTGTCACCAATGTGGAAAGTCCTTTGTAACAAACCGTCGCCTCAAGGATCACGTTCGTACTCATTTGAATTATCGTCCCTTCCCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCAATGTGCACATAAGGATCCACACAGGGGAGAGACCCTACATGTGCTCTGTGTGTGGGAAGACCTTTCAGTCAGCAGGGAATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAAACCCTACCAATGCAAAGAGTGTGACAAACGTTTTACTAAGTCGAGCCATTTAGTGGTCCACATGCGTGGGCATACTGGAGAGCGTCCCTTCACTTGTAATGAATGTGGAAGGAGTTTTATCCGGAAAACTTGCTTAAAGAAACATTTGCTAGTTCATTCAGGGCAGAAGCCTTATTCACGGCCTCGTTGCCCAAATAATTCCAAGCGCAGCTCACAACCAAGCTATCATATGAAGGAGAATCCTACTAATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGTGGCCGCCATGACTGGACATGCGGCCGCCATGGCTGGTCATGTGGCCGCCGTGGCTGGACATGTGGCCGTACCAGCAATCTATCATGACAGCCTTAACATAAAAATGTTGGCACATGTTGGCATGTCCCGAGGCTATGCCATGGAGAGACTAGGAGGTGGTCCTTCAAATTGTTGAACGCTGCCCTGCACACAGAAAAATGTCCCAATACTTCCCCTCCGGCCCTACCTCTCAGTTTTGAGTAACCCTCTTAGTGGGTAGTTGGGAGTGCAATTCGCTAGCGAAGCAACAGGTTATGGGGTAAAATCAATACTAGTCCAGAGAGATTAATGGGTGTTCTAATTATTGTTAACATGGAAACAACTGCATTTTTCATTGTAGGTTTCAAACAAACCCTCTGCAATGGCTTCATGCACGGAATTTAATTGGAACAACTAAGAATTTATCATTAACACAGaaacaaaggaattgtccggtgtAGGTTTTCCAAAAACGTGCAGCGTCATTCACGGATGGGAGAGGGGCCTTGGAAGGTGAAGGGGGTGTGGACTCTAGTCTCTCTATACATCATGTCTCAGAACCTCATCACGTCCCTGATTTGGTGTCCAATCCACTGGACCAGTTAAGAAGCTACTTTTATAGTTTCATGTGATGTTCTGTTTTTCTCAATACAAATATTATTCCTTTACAGATGTATTATAGACATGTAGAGCTGTTTGCATGTAGACATGTTTATGTAATAGGAGCAGTAGTCATGGATAGAGGTTGAGCTGGTGAAATGCATGTGCAATTGTAATATAAGTATTTACTCTAACAGTAATAATGATAATGTGTTATTTGATAAGCGTATTTCTAGACTTTCAAGAAATCTAGAAAAGTGTATTTTCTTGTGTTATATTTGGAGGGTTGTGATATTCTTTGTTATACCTATTATTAAAGGTTTTAATACTTAA
>XM_021576984.2
ATGCGGCGCTCACTAGCAAAGGTAGCTAAGATACTGATTGGCACATGGGCCATAATGGAttcacccatccctctctcctccctgcgcCTTTTGGTTCCACCTCTACGGCTGATGTCTGCATTTATGTGGCAGGTAGCACAACAGAGGGCCATCAAGCACTATGGAAAATTAGAGGAGTTTGTGACCGTGGTAACACAAACTGTCCCAGAACTTATGACTGACAGACAAAGGACCCTCCTTATTTTGGGTCTGAGAGCAAGGGTAAACCCTGTCAGCCTCCGGACCCTCCTTTATAGAATAAAGTCTTCTCAACATGCACAGTCCAATGATACAGGCATGGAATCACCTGAAGCTAACTTTGCCAAGCTCACCCAAAGCTTGCTTATAGACCCGGTTGAGCGTGAACACTTCGTCCAAGTGGTGTTTCCTGAAGAATTCAGACCTGATTTTGACCAAGTGCTTCAGGAACTGGTCTGTGACTTCCTCACTCGGCTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCTGGCTCATCTGGCCTGGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGGACATTGTACACAAACATTTCCTCCTCTGACATTCCTCAGGAATCAGATATTGAATCCGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGTTGTGGGGATGAGGACTGGGATACAAAGCAGAGACTGCCAAAGGATGGAGTTGGCATCACATTTAGTGGAAATGGGGAGCACAAGAGATATTATAGGCTGTGATGAAACCTGTGATGAAGGGAATGAAGATGACATTGATGTAGAGGACGACCCAAAACAGAAAAGGGCTGGTTCTGGTCATTCTCCTACCAGTGTCATGCAAGGTGGTGATACAGACACTGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTTTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATGAACATTTTCCACCAGTGTCCCCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGTGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGTTCCAAGTGCTGGAGAGAGTTTGGTTCTCTGCGTGAGAAATTGAGACACCAGTGTCCACACAACGAAGTCATGTACATCTGTCCACAGAGCGGGAAGAGTTTTAAGACGCCACAGCAACAACCATTCCAGTGCCGTCATTGCGCAATGGCCTTTTCTGAAATGGATCAACTGCATGCTCACGAAAAAATTCACGGAATCCCCCAAACTCTTGACTGTCACACATGTGGAATTACCTTCAGCAACTTGCCCAGTCTAGTGCACCACGTGGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCttccaaagaagaagaaaggaTTGCAGCTTCCGAAAACTCACCACTGTCACCAATGTGGAAAGTCCTTTGTAACAAACCGTCGCCTCAAGGATCACGTTCGTACTCATTTGAATTATCGTCCCTTCCCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCAATGTGCACATAAGGATCCACACAGGGGAGAGACCCTACATGTGCTCTGTGTGTGGGAAGACCTTTCAGTCAGCAGGGAATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAAACCCTACCAATGCAAAGAGTGTGACAAACGTTTTACTAAGTCGAGCCATTTAGTGGTCCACATGCGTGGGCATACTGGAGAGCGTCCCTTCACTTGTAATGAATGTGGAAGGAGTTTTATCCGGAAAACTTGCTTAAAGAAACATTTGCTAGTTCATTCAGGGCAGAAGCCTTATTCACGGCCTCGTTGCCCAAATAATTCCAAGCGCAGCTCACAACCAAGCTATCATATGAAGGAGAATCCTACTAATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGTGGCCGCCATGACTGGACATGCGGCCGCCATGGCTGGTCATGTGGCCGCCGTGGCTGGACATGTGGCCGTACCAGCAATCTATCATGACAGCCTTAACATAAAAATGTTGGCACATGTTGGCATGTCCCGAGGCTATGCCATGGAGAGACTAGGAGGTGGTCCTTCAAATTGTTGAACGCTGCCCTGCACACAGAAAAATGTCCCAATACTTCCCCTCCGGCCCTACCTCTCAGTTTTGAGTAACCCTCTTAGTGGGTAGTTGGGAGTGCAATTCGCTAGCGAAGCAACAGGTTATGGGGTAAAATCAATACTAGTCCAGAGAGATTAATGGGTGTTCTAATTATTGTTAACATGGAAACAACTGCATTTTTCATTGTAGGTTTCAAACAAACCCTCTGCAATGGCTTCATGCACGGAATTTAATTGGAACAACTAAGAATTTATCATTAACACAGaaacaaaggaattgtccggtgtAGGTTTTCCAAAAACGTGCAGCGTCATTCACGGATGGGAGAGGGGCCTTGGAAGGTGAAGGGGGTGTGGACTCTAGTCTCTCTATACATCATGTCTCAGAACCTCATCACGTCCCTGATTTGGTGTCCAATCCACTGGACCAGTTAAGAAGCTACTTTTATAGTTTCATGTGATGTTCTGTTTTTCTCAATACAAATATTATTCCTTTACAGATGTATTATAGACATGTAGAGCTGTTTGCATGTAGACATGTTTATGTAATAGGAGCAGTAGTCATGGATAGAGGTTGAGCTGGTGAAATGCATGTGCAATTGTAATATAAGTATTTACTCTAACAGTAATAATGATAATGTGTTATTTGATAAGCGTATTTCTAGACTTTCAAGAAATCTAGAAAAGTGTATTTTCTTGTGTTATATTTGGAGGGTTGTGATATTCTTTGTTATACCTATTATTAAAGGTTTTAATACTTAA
>XM_021576985.2
GGGAAGCTAGCTAGGCCTACTTTGCCGTTTTTAGCGAAACCCCTTGATCTATCTAGCAGTGCCGCTACGGCGATCTGTTATATTATTGACTAACGTTCAGTTTTGAATTATGTTATTGTGCCCATTTGCGTACGTTCTGTGCAAGCTAGGCTTATAGCTAATACAttcacccatccctctctcctccctgcgcCTTTTGGTTCCACCTCTACGGCTGATGTCTGCATTTATGTGGCAGGTAGCACAACAGAGGGCCATCAAGCACTATGGAAAATTAGAGGAGTTTGTGACCGTGGTAACACAAACTGTCCCAGAACTTATGACTGACAGACAAAGGACCCTCCTTATTTTGGGTCTGAGAGCAAGGGTAAACCCTGTCAGCCTCCGGACCCTCCTTTATAGAATAAAGTCTTCTCAACATGCACAGTCCAATGATACAGGCATGGAATCACCTGAAGCTAACTTTGCCAAGCTCACCCAAAGCTTGCTTATAGACCCGGTTGAGCGTGAACACTTCGTCCAAGTGGTGTTTCCTGAAGAATTCAGACCTGATTTTGACCAAGTGCTTCAGGAACTGGTCTGTGACTTCCTCACTCGGCTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCTGGCTCATCTGGCCTGGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGGACATTGTACACAAACATTTCCTCCTCTGACATTCCTCAGGAATCAGATATTGAATCCGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGTTGTGGGGATGAGGACTGGGATACAAAGCAGAGACTGCCAAAGGATGGAGTTGGCATCACATTTAGTGGAAATGGGGAGCACAAGAGATATTATAGGCTGTGATGAAACCTGTGATGAAGGGAATGAAGATGACATTGATGTAGAGGACGACCCAAAACAGAAAAGGGCTGGTTCTGGTCATTCTCCTACCAGTGTCATGCAAGGTGGTGATACAGACACTGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTTTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATGAACATTTTCCACCAGTGTCCCCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGTGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGTTCCAAGTGCTGGAGAGAGTTTGGTTCTCTGCGTGAGAAATTGAGACACCAGTGTCCACACAACGAAGTCATGTACATCTGTCCACAGAGCGGGAAGAGTTTTAAGACGCCACAGCAACAACCATTCCAGTGCCGTCATTGCGCAATGGCCTTTTCTGAAATGGATCAACTGCATGCTCACGAAAAAATTCACGGAATCCCCCAAACTCTTGACTGTCACACATGTGGAATTACCTTCAGCAACTTGCCCAGTCTAGTGCACCACGTGGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCttccaaagaagaagaaaggaTTGCAGCTTCCGAAAACTCACCACTGTCACCAATGTGGAAAGTCCTTTGTAACAAACCGTCGCCTCAAGGATCACGTTCGTACTCATTTGAATTATCGTCCCTTCCCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCAATGTGCACATAAGGATCCACACAGGGGAGAGACCCTACATGTGCTCTGTGTGTGGGAAGACCTTTCAGTCAGCAGGGAATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAAACCCTACCAATGCAAAGAGTGTGACAAACGTTTTACTAAGTCGAGCCATTTAGTGGTCCACATGCGTGGGCATACTGGAGAGCGTCCCTTCACTTGTAATGAATGTGGAAGGAGTTTTATCCGGAAAACTTGCTTAAAGAAACATTTGCTAGTTCATTCAGGGCAGAAGCCTTATTCACGGCCTCGTTGCCCAAATAATTCCAAGCGCAGCTCACAACCAAGCTATCATATGAAGGAGAATCCTACTAATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGCGACTGCCATGACTGGACATGTGGCCGCCATGACTGGACATGCGGCCGCCATGGCTGGTCATGTGGCCGCCGTGGCTGGACATGTGGCCGTACCAGCAATCTATCATGACAGCCTTAACATAAAAATGTTGGCACATGTTGGCATGTCCCGAGGCTATGCCATGGAGAGACTAGGAGGTGGTCCTTCAAATTGTTGAACGCTGCCCTGCACACAGAAAAATGTCCCAATACTTCCCCTCCGGCCCTACCTCTCAGTTTTGAGTAACCCTCTTAGTGGGTAGTTGGGAGTGCAATTCGCTAGCGAAGCAACAGGTTATGGGGTAAAATCAATACTAGTCCAGAGAGATTAATGGGTGTTCTAATTATTGTTAACATGGAAACAACTGCATTTTTCATTGTAGGTTTCAAACAAACCCTCTGCAATGGCTTCATGCACGGAATTTAATTGGAACAACTAAGAATTTATCATTAACACAGaaacaaaggaattgtccggtgtAGGTTTTCCAAAAACGTGCAGCGTCATTCACGGATGGGAGAGGGGCCTTGGAAGGTGAAGGGGGTGTGGACTCTAGTCTCTCTATACATCATGTCTCAGAACCTCATCACGTCCCTGATTTGGTGTCCAATCCACTGGACCAGTTAAGAAGCTACTTTTATAGTTTCATGTGATGTTCTGTTTTTCTCAATACAAATATTATTCCTTTACAGATGTATTATAGACATGTAGAGCTGTTTGCATGTAGACATGTTTATGTAATAGGAGCAGTAGTCATGGATAGAGGTTGAGCTGGTGAAATGCATGTGCAATTGTAATATAAGTATTTACTCTAACAGTAATAATGATAATGTGTTATTTGATAAGCGTATTTCTAGACTTTCAAGAAATCTAGAAAAGTGTATTTTCTTGTGTTATATTTGGAGGGTTGTGATATTCTTTGTTATACCTATTATTAAAGGTTTTAATACTTAA

Function

NR:

description
zinc finger protein ZFMSA12A-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576986.2 False 3100 mRNA 0.46 9 19797479 19806872
XM_021576984.2 False 3089 mRNA 0.45 9 19797729 19806872
XM_021576985.2 True 3195 mRNA 0.45 9 19798047 19806872

Neighbor

gene id symbol gene type direction distance location
LOC110499918 LOC106609536 coding upstream 13294 19763662 ~ 19784185 (+)
LOC110499934 LOC106576387 coding upstream 36186 19755909 ~ 19761293 (+)
LOC110499917 LOC106576387 coding upstream 45175 19742124 ~ 19752304 (+)
LOC118942906 NA coding upstream 87717 19709214 ~ 19709762 (+)
LOC110499932 NA coding upstream 365980 19425393 ~ 19431499 (+)
LOC110499937 LOC106609533 coding downstream 3679 19810551 ~ 19818578 (+)
LOC110499940 LOC106609531 coding downstream 54282 19861154 ~ 19885723 (+)
LOC110499945 LOC106609530 coding downstream 85605 19892477 ~ 19900807 (+)
LOC110499950 LOC106609529 coding downstream 96713 19903585 ~ 19907504 (+)
ube2n LOC106609528 coding downstream 100827 19907699 ~ 19910772 (+)
G1714620 NA non-coding upstream 3952 19793257 ~ 19793527 (+)
G1714619 NA non-coding upstream 4314 19792888 ~ 19793165 (+)
G1714613 NA non-coding upstream 10139 19786679 ~ 19787340 (+)
G1714612 NA non-coding upstream 12751 19784382 ~ 19784728 (+)
G1714654 cl011 non-coding downstream 42495 19849367 ~ 19851600 (+)
G1714674 NA non-coding downstream 80192 19887064 ~ 19887326 (+)
G1714675 NA non-coding downstream 82450 19889322 ~ 19889531 (+)
G1714666 NA non-coding downstream 96182 19903054 ~ 19903389 (+)
G1714679 NA non-coding downstream 105975 19912847 ~ 19913157 (+)
G1714090 NA other upstream 173565 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1060043 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1296605 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1529971 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2128893 17666280 ~ 17668586 (+)
nmes1 nmes1 other downstream 302326 20109125 ~ 20113891 (+)
G1715392 NA other downstream 751550 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1191726 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2369091 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2912047 22718919 ~ 22784445 (+)

Expression


Co-expression Network