LOC110499940 (LOC106609531)


Basic Information

Item Value
gene id LOC110499940
gene name LOC106609531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19861154 ~ 19885723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576996.2
ATAAAGTGGGAACTTTTGAAATACATGCAGCTCATTGGTAGTGATCTTACATGATGCGTTAATTCCGCCGTGACATTTTGCTATCCAGGTTTAACCGTTGATGACTTGTTGTGATATGTGACATATTTGAGATGAATGAGAGTGGGGACAACATCCTTGAAATGGATTCTTTGTCCGAGACAAAATTGGATGGCGACACGGAGATAGAGATGGGAATGGAAGTTGtctacTCTCAGGAGTTTTTGCCAACCTTTGAGACTATACCTGAGGGGGCATCAGTGCCCAAAGTGGAGAAGGCTGAGTTCAATGGCAAATCTGACTCTCTGTTCTTCAATGATGGGGTTAGACGGATCGACTTTGTCTTAGTCTATGAAGATGAGGACATGAAGGAGATCGACAAGAATAGAACGTTCCAGAAACGTAAACAACGGAGAGAGTACTTTGAGGCCAGCTTGATGAAGATGGGGATGGAACTAGAGGCTGCCAGATCTGTGGTAGATGAGAAGCTGTTGTTCGTCAAGGTGCACATGCCCTGGGACGTGCTATGTACCTACGCCGAGGTCCTCCACATCAAGCTGCCCATTCAGCCCAATGATCTGTCCACCACGTCCTCACCCTTCAACTTCCTCAGCTGCATCACCAGACACTTCTACCCCAGCGAGGACCTCATAGCCAAGGAGACGGAGTACTTCACTGCCCCGTTCGAGAAGGACAGACTGGAGTACTTCTACGTGAAGGACCGGGACCTCTTCTTCACGCCGTCCATGAGGAGTAGAATGGCCTACTACATCCTCAGCCGAGCCCCCTATGAGGTGCGAGGGAACATCAAGAAGTTTGGTGTCACCAAGCTGCTCGATGGGGGGGTGTACAAGGCTGCTTATCCCCTGCATGATTGCAGATTCAACGTCAGGTCGAAGGAAGATGAGTGCCCCAATGAGAGATACCTCCTGTATAACGAGTGGGCTCACCCTAAAAGTTTCTATAAGATGCAGCCACTTGATCTCATAAGAAAGTATTATGGGGAGAAGATTGGCATTTACTTTGCTTGGCTGGGCTTCTATACAGCCATGCTGGCCCTCGCTGCCATTGTTGGACTTGGCTGTTTCATTTATGGGTACACGACTCAAGAAACAAGCACCTGGAGCAAAGAGGTGTGCGACCCTTTGATTGGAGGAAATATTGTGATGTGTCCGCAGTGTGATAAGGAGTGCACATACTGGAGGCTGAACAGCACCTGTGAATCTTCTAAAAAACTGTGCATATTTGATAACTATGGGACGCTGGTGTTTGCTGTCTTTATGGCCATTTGGGTGACCGTGTTTCTGGAGTTCTGGAAGCGCTACCAGGCAGAGCTGGAGTATGAGTGGGACACCGTGGAGTTCctggagcaggaggagcaacCTCGTCCCGAGTATGAGGCCAAGTGTAACCATGAGAGAATCAACCCTGTCACACGGGTAAAAGAGAAAGTACCTTATACAGCCTGTGGACGGTGTATAAGAGTGTCTTTAGGAATCGGGACCGTCTTATTCTGGATTGTGTTGATCCTAGCGTCAGTGGTGGCCATCATCGTATACCGACTGGCAGTGTTCTTCTCATTTTCGACAAGACTCCAGTCTGACCTAAAGGAGCTCGAACCGTTTAAGGAGTATGTGACCGCCCAAATGGCCACCTCCGTCACTGCTTCTATCATCAGCTTCGTAGTAATCATGGTGCTCAACATCCTGTATGAGAGGGTTGCCATCTGGATCACTGACTTCGAGCTACCAAGGACCAAGACGGATTATGAGAACAGTCTGACTCTGAAGATGTTCCTGTTCCAGTTTGTCAACTACTACTCCTCCTGCTTCTACATTGCCTTTGCCAAAGGGAAAGTGGTTGGTTACCCTGGACAACCTGTTTACCTGCTGGGCAAGTACAGGAATGAGGAGTGTGATCCAGGAGGATGCCTGATTGAGTTGACAACCCAGCTCACTGTCATCATGGGCGGTAAAGCCATCTGGAATAACATTCAGGAGGTGTTGCTGCCGTGGATGAAGAATTTGATATTCCGCTACTGCACACGTGTGGGGTCTGAAAAGGTGATTCCTCGCTGGGAGCAGGACTATCAGCTGCAGCCCATTGGGAAGCTGGGCCTCTTCTATGAATACCTGGAGATGGTGATCCAGTTTGGTTTTGTGACTCTGTTCGTGGCCTCCTTCCCCCTGGCTCCTGTCCTGGCTCTGGTCAATAACCTCTTCGAGATCCGGGTGGACGCCTGGAAGATCATCACCCAGTTCCGCCGCATGGTTCCAGAGAAGGCCCAAGACATCGGGGCGTGGCAACCCATTCTCCAAGGTGTCGCCATCTTGGCTGTGGCATCAAATGCCATGATCATTGCCTTCACATCAGACATGATCCCACGATTGGTTTACTACTGGTCTTTCTCTGTGTATCCCTATGGAGAGCATTCCAGTCACACCATGCAGGGCTACATCAACAACACCCTCTCTGTGTTCGACATCCAGGACTTCTCCAACAAGAGCCGGCCCTTGCAAACACCTTACTGGTTCAATAACAGCACCACCTGCAGATATCGAGATTTCAGATACCCACCAGGACATCACAGACAATATGAATACAGTATCTACTACTGGCATGTGATAGCTGCCAAGATGGCTTTCATAATAGTTGTAGAGCACATTGTATACCTGACCAAGTTCGTTCTGTCCTACGTGATCCCGGACGTGCCTTACACAGTGAGGGAACAGATCAAACGAGAGAAGTACTTAAGCCAGGTCATCCTTCACGAGACCAACCTCAAACTGGTGACCAAACGCTTAAAGCCTGTCGCTGATAAGATACTTAAACACAatgaggacaaggaggaggagattATGGACCTTTACTTTTAATCTCTGAAGCTTTGTCAGAGAAGAGAGAGTCCTGCCTTTGTCAGGACCTACAATATTTACAAGTATTGTGAGCAGCTAAAGATGTattcaaaacatgttttaataACTTTAATTAATATGAATTAATATTATTAGTAGCTTAATAGCTTGGTGGGGACTACGACCAACCAAACCAGCCATGAAGCTCAGCTCTGTTGCTCAGATCTCTGGATCAATTGCATATTTAGCACTTTTATGTCACTGATTGTTACATGTACACTGTTACATTTAATGTGTCTTGTATTGATAAAATTAGGATTCAATGCCATATGTTTGACTGTACGGTAAATATGGAAGATTATGAATGACAACAATACTTTTCTTctttaaacaaaacatacagattTTTATACAATTTGTGGCCTAGGACTATCCAAACATTTCTAATACTCAAGGTGTGCTTGATTTAGTCAGGAATAATTCCAAAAGCTCAAATTGCGTTGACCAGGCAAGCCATCAAGTATGGAAGCTCGTTCCCGCCACCAAGAAAAAATATCTGACTACGAGTTATGAGATAGTAAGGTATAATTATGAGATAGAATGTCTGGATCATGGACATTGAATAGTCCTGCAGGTCGACCccttttaaaggggaaatctgggaTTCGCACAATAACAAAGCTTCTCCCACCACAGCGAGGAATGGGgcaggagaaatgtaaccaatctCAAATACATAGACACAAGGACTCAcatatggatgcaaggactgaccatccatgagataCAAATTATATTTTTAACCATGTGTTGAAGCTATACTGTGTttttttacaattacattgtttacacACAAGAGAGTAAaccaagcttatattttgggttctgactgAGTAAGACCGTTACTCATTTCTAAGTTACATTATTGAAGAATCAGTGgctttacactgagtgtacaaaacatatttccatgacatagactgaccaggtgaatccaggtgaaagctatgattccttattgatctTACTTGTAAaacccacttcaatcagtgtagatgaaggggaagagacaggttaaagaagggtttTATTGAGTCATGGagtcatggattgtgtatgtatgccattcagagggttgaaagggcaaaacaaaatattaaagtgcctttgaatggagtatggtagtaggtgccaggcgcactgattTGAGTGTCGAGAGcttcaacgctgctgggtttttcacgctcaatagtttcccgtgtgtatcaggaatggtccaccacccaaaggacatccagccaacttgacacaactttggaaagcattgaagtcaacatgggccagcatccctgtggaacgctttcgacaccttgtagagtccatgacccaacaaattgaggctgttctgagggcaaaagtacATATGAATTAAACAATATCACCACAATCTCTCTATCTTATCAATGTGTCATTGACTATAAGATATGCATAAGGTTATCCTTAGTTGAGGAAGGCCTGATGCAAAGTGCACATTGGATTTATGTGATGCAGATCACCTGAACGTATCTCATACTAATGACTTACTATCATATATATGTCTTTCTATCTCATAACTCGTAGTCAGATTTTATTTTTGGGTGGCGGGAACGAGCTTCCATACATACTCATGGTCACCTCAAGTATTTACAGTACCATTTTTGGCCTATGTATTCGATTTTAAGCATTTTGATAGAAGTCTATCGCTTGAATCAATATATGTTGCTGTATTATATTgtgcttttttttaaatcaaaggtATATATGAACTAACAATCTGCCCCTGTTTACAATATTTGTCTTTCAAGTATTTTGTCAAGTGTATTGTAATTTGTATGTTATCCCAAATAAAATCAAAAGTCTTTGTTTTTTATTTAGAA
>XM_021576997.2
AAAAGCCCTCCTCCTAAAGTACCCATAGTCCGTATAGGACTACCCCACACATTCTTtcaaattagaatttgttctgaaAAGCATGCACCGTTTTTTTCTTTTGAAACAATGTTGACAAATAAAGTTAGTCAACTTTTGGAACACATGCAGCTCATTGGCAGTAATCTACATGATGCCTTATTTCCGCGGTAAAATTTTCCAGACAACCCTCCACTTTTAACCATTAATGACTTGTGATATGTGACAGATTTATTAAAATTAGTGAGGACGGGTACAACGACATTTTTAAAATGGATTATGTGTCCGAAATAGAATTAGAGGGCGACACGGAGATCGAGATGGGTATGATAGAGGACGTCGtctacTCTCAGGAGTTTTTGCCAACCTTTGAGACTATACCTGAGGGGGCATCAGTGCCCAAAGTGGAGAAGGCTGAGTTCAATGGCAAATCTGACTCTCTGTTCTTCAATGATGGGGTTAGACGGATCGACTTTGTCTTAGTCTATGAAGATGAGGACATGAAGGAGATCGACAAGAATAGAACGTTCCAGAAACGTAAACAACGGAGAGAGTACTTTGAGGCCAGCTTGATGAAGATGGGGATGGAACTAGAGGCTGCCAGATCTGTGGTAGATGAGAAGCTGTTGTTCGTCAAGGTGCACATGCCCTGGGACGTGCTATGTACCTACGCCGAGGTCCTCCACATCAAGCTGCCCATTCAGCCCAATGATCTGTCCACCACGTCCTCACCCTTCAACTTCCTCAGCTGCATCACCAGACACTTCTACCCCAGCGAGGACCTCATAGCCAAGGAGACGGAGTACTTCACTGCCCCGTTCGAGAAGGACAGACTGGAGTACTTCTACGTGAAGGACCGGGACCTCTTCTTCACGCCGTCCATGAGGAGTAGAATGGCCTACTACATCCTCAGCCGAGCCCCCTATGAGGTGCGAGGGAACATCAAGAAGTTTGGTGTCACCAAGCTGCTCGATGGGGGGGTGTACAAGGCTGCTTATCCCCTGCATGATTGCAGATTCAACGTCAGGTCGAAGGAAGATGAGTGCCCCAATGAGAGATACCTCCTGTATAACGAGTGGGCTCACCCTAAAAGTTTCTATAAGATGCAGCCACTTGATCTCATAAGAAAGTATTATGGGGAGAAGATTGGCATTTACTTTGCTTGGCTGGGCTTCTATACAGCCATGCTGGCCCTCGCTGCCATTGTTGGACTTGGCTGTTTCATTTATGGGTACACGACTCAAGAAACAAGCACCTGGAGCAAAGAGGTGTGCGACCCTTTGATTGGAGGAAATATTGTGATGTGTCCGCAGTGTGATAAGGAGTGCACATACTGGAGGCTGAACAGCACCTGTGAATCTTCTAAAAAACTGTGCATATTTGATAACTATGGGACGCTGGTGTTTGCTGTCTTTATGGCCATTTGGGTGACCGTGTTTCTGGAGTTCTGGAAGCGCTACCAGGCAGAGCTGGAGTATGAGTGGGACACCGTGGAGTTCctggagcaggaggagcaacCTCGTCCCGAGTATGAGGCCAAGTGTAACCATGAGAGAATCAACCCTGTCACACGGGTAAAAGAGAAAGTACCTTATACAGCCTGTGGACGGTGTATAAGAGTGTCTTTAGGAATCGGGACCGTCTTATTCTGGATTGTGTTGATCCTAGCGTCAGTGGTGGCCATCATCGTATACCGACTGGCAGTGTTCTTCTCATTTTCGACAAGACTCCAGTCTGACCTAAAGGAGCTCGAACCGTTTAAGGAGTATGTGACCGCCCAAATGGCCACCTCCGTCACTGCTTCTATCATCAGCTTCGTAGTAATCATGGTGCTCAACATCCTGTATGAGAGGGTTGCCATCTGGATCACTGACTTCGAGCTACCAAGGACCAAGACGGATTATGAGAACAGTCTGACTCTGAAGATGTTCCTGTTCCAGTTTGTCAACTACTACTCCTCCTGCTTCTACATTGCCTTTGCCAAAGGGAAAGTGGTTGGTTACCCTGGACAACCTGTTTACCTGCTGGGCAAGTACAGGAATGAGGAGTGTGATCCAGGAGGATGCCTGATTGAGTTGACAACCCAGCTCACTGTCATCATGGGCGGTAAAGCCATCTGGAATAACATTCAGGAGGTGTTGCTGCCGTGGATGAAGAATTTGATATTCCGCTACTGCACACGTGTGGGGTCTGAAAAGGTGATTCCTCGCTGGGAGCAGGACTATCAGCTGCAGCCCATTGGGAAGCTGGGCCTCTTCTATGAATACCTGGAGATGGTGATCCAGTTTGGTTTTGTGACTCTGTTCGTGGCCTCCTTCCCCCTGGCTCCTGTCCTGGCTCTGGTCAATAACCTCTTCGAGATCCGGGTGGACGCCTGGAAGATCATCACCCAGTTCCGCCGCATGGTTCCAGAGAAGGCCCAAGACATCGGGGCGTGGCAACCCATTCTCCAAGGTGTCGCCATCTTGGCTGTGGCATCAAATGCCATGATCATTGCCTTCACATCAGACATGATCCCACGATTGGTTTACTACTGGTCTTTCTCTGTGTATCCCTATGGAGAGCATTCCAGTCACACCATGCAGGGCTACATCAACAACACCCTCTCTGTGTTCGACATCCAGGACTTCTCCAACAAGAGCCGGCCCTTGCAAACACCTTACTGGTTCAATAACAGCACCACCTGCAGATATCGAGATTTCAGATACCCACCAGGACATCACAGACAATATGAATACAGTATCTACTACTGGCATGTGATAGCTGCCAAGATGGCTTTCATAATAGTTGTAGAGCACATTGTATACCTGACCAAGTTCGTTCTGTCCTACGTGATCCCGGACGTGCCTTACACAGTGAGGGAACAGATCAAACGAGAGAAGTACTTAAGCCAGGTCATCCTTCACGAGACCAACCTCAAACTGGTGACCAAACGCTTAAAGCCTGTCGCTGATAAGATACTTAAACACAatgaggacaaggaggaggagattATGGACCTTTACTTTTAATCTCTGAAGCTTTGTCAGAGAAGAGAGAGTCCTGCCTTTGTCAGGACCTACAATATTTACAAGTATTGTGAGCAGCTAAAGATGTattcaaaacatgttttaataACTTTAATTAATATGAATTAATATTATTAGTAGCTTAATAGCTTGGTGGGGACTACGACCAACCAAACCAGCCATGAAGCTCAGCTCTGTTGCTCAGATCTCTGGATCAATTGCATATTTAGCACTTTTATGTCACTGATTGTTACATGTACACTGTTACATTTAATGTGTCTTGTATTGATAAAATTAGGATTCAATGCCATATGTTTGACTGTACGGTAAATATGGAAGATTATGAATGACAACAATACTTTTCTTctttaaacaaaacatacagattTTTATACAATTTGTGGCCTAGGACTATCCAAACATTTCTAATACTCAAGGTGTGCTTGATTTAGTCAGGAATAATTCCAAAAGCTCAAATTGCGTTGACCAGGCAAGCCATCAAGTATGGAAGCTCGTTCCCGCCACCAAGAAAAAATATCTGACTACGAGTTATGAGATAGTAAGGTATAATTATGAGATAGAATGTCTGGATCATGGACATTGAATAGTCCTGCAGGTCGACCccttttaaaggggaaatctgggaTTCGCACAATAACAAAGCTTCTCCCACCACAGCGAGGAATGGGgcaggagaaatgtaaccaatctCAAATACATAGACACAAGGACTCAcatatggatgcaaggactgaccatccatgagataCAAATTATATTTTTAACCATGTGTTGAAGCTATACTGTGTttttttacaattacattgtttacacACAAGAGAGTAAaccaagcttatattttgggttctgactgAGTAAGACCGTTACTCATTTCTAAGTTACATTATTGAAGAATCAGTGgctttacactgagtgtacaaaacatatttccatgacatagactgaccaggtgaatccaggtgaaagctatgattccttattgatctTACTTGTAAaacccacttcaatcagtgtagatgaaggggaagagacaggttaaagaagggtttTATTGAGTCATGGagtcatggattgtgtatgtatgccattcagagggttgaaagggcaaaacaaaatattaaagtgcctttgaatggagtatggtagtaggtgccaggcgcactgattTGAGTGTCGAGAGcttcaacgctgctgggtttttcacgctcaatagtttcccgtgtgtatcaggaatggtccaccacccaaaggacatccagccaacttgacacaactttggaaagcattgaagtcaacatgggccagcatccctgtggaacgctttcgacaccttgtagagtccatgacccaacaaattgaggctgttctgagggcaaaagtacATATGAATTAAACAATATCACCACAATCTCTCTATCTTATCAATGTGTCATTGACTATAAGATATGCATAAGGTTATCCTTAGTTGAGGAAGGCCTGATGCAAAGTGCACATTGGATTTATGTGATGCAGATCACCTGAACGTATCTCATACTAATGACTTACTATCATATATATGTCTTTCTATCTCATAACTCGTAGTCAGATTTTATTTTTGGGTGGCGGGAACGAGCTTCCATACATACTCATGGTCACCTCAAGTATTTACAGTACCATTTTTGGCCTATGTATTCGATTTTAAGCATTTTGATAGAAGTCTATCGCTTGAATCAATATATGTTGCTGTATTATATTgtgcttttttttaaatcaaaggtATATATGAACTAACAATCTGCCCCTGTTTACAATATTTGTCTTTCAAGTATTTTGTCAAGTGTATTGTAATTTGTATGTTATCCCAAATAAAATCAAAAGTCTTTGTTTTTTATTTAGAA

Function

NR:

description
anoctamin-6-like isoform X2

GO: NA

KEGG:

id description
K19500 ANO6, TMEM16F; anoctamin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576996.2 False 4789 mRNA 0.44 20 19861154 19885723
XM_021576997.2 True 4924 mRNA 0.44 20 19870615 19885723

Neighbor

gene id symbol gene type direction distance location
LOC110499937 LOC106609533 coding upstream 42576 19810551 ~ 19818578 (+)
LOC110499935 LOC106609535 coding upstream 54282 19797479 ~ 19806872 (+)
LOC110499918 LOC106609536 coding upstream 76969 19763662 ~ 19784185 (+)
LOC110499934 LOC106576387 coding upstream 99861 19755909 ~ 19761293 (+)
LOC110499917 LOC106576387 coding upstream 108850 19742124 ~ 19752304 (+)
LOC110499945 LOC106609530 coding downstream 6754 19892477 ~ 19900807 (+)
LOC110499950 LOC106609529 coding downstream 17862 19903585 ~ 19907504 (+)
ube2n LOC106609528 coding downstream 21976 19907699 ~ 19910772 (+)
LOC110499949 LOC106609526 coding downstream 38067 19923790 ~ 19934601 (+)
LOC110499941 pkp2 coding downstream 53728 19939451 ~ 19951917 (+)
G1714654 cl011 non-coding upstream 9554 19849367 ~ 19851600 (+)
G1714620 NA non-coding upstream 67627 19793257 ~ 19793527 (+)
G1714619 NA non-coding upstream 67989 19792888 ~ 19793165 (+)
G1714613 NA non-coding upstream 73814 19786679 ~ 19787340 (+)
G1714612 NA non-coding upstream 76426 19784382 ~ 19784728 (+)
G1714674 NA non-coding downstream 1341 19887064 ~ 19887326 (+)
G1714675 NA non-coding downstream 3599 19889322 ~ 19889531 (+)
G1714666 NA non-coding downstream 17331 19903054 ~ 19903389 (+)
G1714679 NA non-coding downstream 27124 19912847 ~ 19913157 (+)
LOC110499947 LOC106576403 non-coding downstream 87739 19973446 ~ 20008614 (+)
G1714090 NA other upstream 237240 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1123718 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1360280 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1593646 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2192568 17666280 ~ 17668586 (+)
nmes1 nmes1 other downstream 223475 20109125 ~ 20113891 (+)
G1715392 NA other downstream 672699 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1112875 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2290240 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2833196 22718919 ~ 22784445 (+)

Expression


Co-expression Network