LOC110499946 (LOC106609525)


Basic Information

Item Value
gene id LOC110499946
gene name LOC106609525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19952514 ~ 19956800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577004.2
CTACTATACGTGCTGAATTAGGCCTACGTCAATTTTGTTTTGAGACGATTTCGCCCTGGCCTTTGAACGGGGCACCTGGTTCACGCCCGGGAGGCAGCCCGGTTCCAAATCGAATGCAATAAACTTTCAGCCGAAGCGAAACACGCCTACACGGGCGCCCGGACGGGATGAATCGAACCCCTCAATGTTCCGGTATAGCGGACACGTCTGGGATTTCCGAGATTACCCACGACCCAACCCAAACAGGAAGTGTAAACACTTCTCACGTAACAGCAGCGCATGTGATAGCCTTTCTCTTCGACTCCTCAGCATTCACCACTTGGGACTCTGATACTGTTTTGCTCAGTTGGTTGGTGTGTGCACCAGAATACTCGAGGCCATGGACTCGATCAGTTGTTCGATCTGCCTGGATCTACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTAAAGGCTGTATCAAGGGATATTGGAGTCTTGATGACCAAAAGGGAATTCACAGCTGCCCCCAGTGCCGACAGACCTTCACCCCAAGACCTGCTCTGAACAGAAACATTCTGCTGGCTGAGTTGGTAGAGAAATTGAAGACCGATTTCAAAACGGTTCCCTCTGCTTCTTGTTTCTCTGGACCTGAAGATGTGAAGTATGATCGTGATGACTCAGCCGCAGCAGCAGAGAGGACGGAGAAACAGGGGCAGCTGAGGGAGAAACGGCAGCAGGTCGGGCTGAGaatctgtgtgagagagaaggagatgcagGACATAAGAAAGGCGGTGATGTCCCTTTCACTTTCAGCACAGGCAGCAGTGGAGCACTGTGAGCTGGTCTTTGCTGAGCTGATCCGCTCCATTGAGAGAAGGCGCTGTgaggtgaaggagctgatcaGCGCCCACCAGAGGGCGTCAGTAAGCCAGGCTGAAGGACTCCTGGTGCGAATGGAGCAGGAGATAGCTGAgctgaagaggagagacaaggagctGGAGCAGCTCGCACAAACAGAGGATAACATTCATTTCCTCAAGACTTTTCAGTCTCTTTGTGTGGCTCCTGGATCTGAGCTCTTACCCTATATCACTGCCAACCAGCACTTCTCCTTTGAAGAAGTGAAGAGCTCCATCTCTGGAATGATGGAGCGACTGGAGGATGTGTTGAAGGAGGAAATGGTCCAGATACCTGGAAAAGTCTATGTCCTCAGCCCAAGACCAGAATTAATGGCTGCTGCTGAAGTACATTTTCATCATGAGCCCAAGACCAGAGTGGAGTACTTGGAGAACTACTGCCATCTCACGTTGGATCCCAACTCGGCGTATCAACACCTGCGTCTGTCTGAGTGCAATAGAGAAGTGTCATGGAGTGACAAGGCTCTGTCTTATTCTGACCACCCAGACAGATTCACAGACCATTACCAGGTGTTGTGTAAAGAGGATCTGTCTGGAACCCGCTACTGTGAGGTGGATAGGAGGGGGGAGTGTGAGGTAGCCATCACATACAGAAGCATCAGCAGGAAGGGCGGATTGGAATGTTGCTTTGGTTCCAATGATCAGTCCTGGAGTTTGGTGTGTCGCAACTCGAGTTGTTCCTATTGGCACAATAAGAATAGGACTGATATCCCTGTCCCCTGCTCCaccagagtaggagtgtatctggacaGCAGGGCAGGGACTCTGGCCTTCTACAGCGTCTCGGATACAATGACCCTCCTCCACAGagtccagaccacattcactGAGGACCTCTGTGCTGGGTTTTGGGTTGGTCCTGGTTGTGGATCATCTGTGGCTCTGTGTTGACTGAACGTCATAGAATCAAGTGCattttaaatcaaattgtatttgtcaaatgcgccgaatacaacaggtgtaggcttTACtgtgcttacttacgagccctttcccaacaatgcagagttaaaaagtaggaaaaaatagggaaaaaaatgaaggaaacagtaacacaaaATGACGAGACTATATACAAGTTCTACCTGTACTgactcaatgtgcaggggtacgaggtaatatgtatatgtaggtaagggtaaaagtgactaggcaatcaggatgaataataaacagagtagcagcagtgtatgcgaagagtgtgaaagtgtgtatgtgttggagtgtcagtgtagtatgtgtgggtagagtccagtgagtgtataGAGCCAGTGCTCTATGCACAAGGGGGTCAATGAAAATAGTCCGGGTAGACATTTGATGAAATTGTTCAGCGgtcttatggcttcggggtagaagctgttcaggtgccCTTTGGTCTCAGACTTGGCACTCCTGTACCTCTtgttgtgtggtagcagagagaacagtctatgacatgggtggctggagtctttgaaaaatgtttagggccttcctctgacaccgcctggtatagaggtcctggatggcagggagctcggccccagtgacaAATGGGAAGGAAATATAAGACCGATCACTTGGGAAAGTTGGAGAAAGTTGATTTGCTTAAAATTGTGACCTGGATGAAGGGAGTTGACACTTCATTTAGGAGTCCTGCTGCGAAGCCGCTCTTTATCTACAATGTTTGATTCCAGCTTTACTAATGGGGGAGGGGTGGGGCCATTGTTTTAAAGATTACAATAATAAATTAAAGAAATCA
>XM_036957203.1
ATTTTGTTTTGAGACGATTTCGCCCTGGCCTTTGAACGGGGCACCTGGTTCACGCCCGGGAGGCAGCCCGGTTCCAAATCGAATGCAATAAACTTTCAGCCGAAGCGAAACACGCCTACACGGGCGCCCGGACGGGATGAATCGAACCCCTCAATGTTCCGGTATAGCGGACACGTCTGGGATTTCCGAGATTACCCACGACCCAACCCAAACAGGAAGTGTAAACACTTCTCACGTAACAGCAGCGCATGTGATAGCCTTTCTCTTCGACTCCTCAGCATTCACCACTTGGGACTCTGATACTGTTTTGCTCAGTTGGTTGGTGTGTGCACCAGAATACTCGAGGCCATGGACTCGATCAGTTGTTCGATCTGCCTGGATCTACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTAAAGGCTGTATCAAGGGATATTGGAGTCTTGATGACCAAAAGGGAATTCACAGCTGCCCCCAGTGCCGACAGACCTTCACCCCAAGACCTGCTCTGAACAGAAACATTCTGCTGGCTGAGTTGGTAGAGAAATTGAAGACCGATTTCAAAACGGTTCCCTCTGCTTCTTGTTTCTCTGGACCTGAAGATGTGAAGTATGATCGTGATGACTCAGCCGCAGCAGCAGAGAGGACGGAGAAACAGGGGCAGCTGAGGGAGAAACGGCAGCAGGTCGGGCTGAGaatctgtgtgagagagaaggagatgcagGACATAAGAAAGGCGGTGATGTCCCTTTCACTTTCAGCACAGGCAGCAGTGGAGCACTGTGAGCTGGTCTTTGCTGAGCTGATCCGCTCCATTGAGAGAAGGCGCTGTgaggtgaaggagctgatcaGCGCCCACCAGAGGGCGTCAGTAAGCCAGGCTGAAGGACTCCTGGTGCGAATGGAGCAGGAGATAGCTGAgctgaagaggagagacaaggagctGGAGCAGCTCGCACAAACAGAGGATAACATTCATTTCCTCAAGACTTTTCAGTCTCTTTGTGTGGCTCCTGGATCTGAGCTCTTACCCTATATCACTGCCAACCAGCACTTCTCCTTTGAAGAAGTGAAGAGCTCCATCTCTGGAATGATGGAGCGACTGGAGGATGTGTTGAAGGAGGAAATGGTCCAGATACCTGGAAAAGTAACGGCTGTCTCCGAAGTCTATGTCCTCAGCCCAAGACCAGAATTAATGGCTGCTGCTGAAGTACATTTTCATCATGAGCCCAAGACCAGAGTGGAGTACTTGGAGAACTACTGCCATCTCACGTTGGATCCCAACTCGGCGTATCAACACCTGCGTCTGTCTGAGTGCAATAGAGAAGTGTCATGGAGTGACAAGGCTCTGTCTTATTCTGACCACCCAGACAGATTCACAGACCATTACCAGGTGTTGTGTAAAGAGGATCTGTCTGGAACCCGCTACTGTGAGGTGGATAGGAGGGGGGAGTGTGAGGTAGCCATCACATACAGAAGCATCAGCAGGAAGGGCGGATTGGAATGTTGCTTTGGTTCCAATGATCAGTCCTGGAGTTTGGTGTGTCGCAACTCGAGTTGTTCCTATTGGCACAATAAGAATAGGACTGATATCCCTGTCCCCTGCTCCaccagagtaggagtgtatctggacaGCAGGGCAGGGACTCTGGCCTTCTACAGCGTCTCGGATACAATGACCCTCCTCCACAGagtccagaccacattcactGAGGACCTCTGTGCTGGGTTTTGGGTTGGTCCTGGTTGTGGATCATCTGTGGCTCTGTGTTGACTGAACGTCATAGAATCAAGTGCattttaaatcaaattgtatttgtcaaatgcgccgaatacaacaggtgtaggcttTACtgtgcttacttacgagccctttcccaacaatgcagagttaaaaagtaggaaaaaatagggaaaaaaatgaaggaaacagtaacacaaaATGACGAGACTATATACAAGTTCTACCTGTACTgactcaatgtgcaggggtacgaggtaatatgtatatgtaggtaagggtaaaagtgactaggcaatcaggatgaataataaacagagtagcagcagtgtatgcgaagagtgtgaaagtgtgtatgtgttggagtgtcagtgtagtatgtgtgggtagagtccagtgagtgtataGAGCCAGTGCTCTATGCACAAGGGGGTCAATGAAAATAGTCCGGGTAGACATTTGATGAAATTGTTCAGCGgtcttatggcttcggggtagaagctgttcaggtgccCTTTGGTCTCAGACTTGGCACTCCTGTACCTCTtgttgtgtggtagcagagagaacagtctatgacatgggtggctggagtctttgaaaaatgtttagggccttcctctgacaccgcctggtatagaggtcctggatggcagggagctcggccccagtgacaAATGGGAAGGAAATATAAGACCGATCACTTGGGAAAGTTGGAGAAAGTTGATTTGCTTAAAATTGTGACCTGGATGAAGGGAGTTGACACTTCATTTAGGAGTCCTGCTGCGAAGCCGCTCTTTATCTACAATGTTTGATTCCAGCTTTACTAATGGGGGAGGGGTGGGGCCATTGTTTTAAAGATTACAATAATAAATTAAAGAAATCA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577004.2 False 2651 mRNA 0.49 7 19952514 19956800
XM_036957203.1 True 2638 mRNA 0.49 7 19952545 19956800

Neighbor

gene id symbol gene type direction distance location
LOC110499941 pkp2 coding upstream 597 19939451 ~ 19951917 (+)
LOC110499949 LOC106609526 coding upstream 17913 19923790 ~ 19934601 (+)
ube2n LOC106609528 coding upstream 41742 19907699 ~ 19910772 (+)
LOC110499950 LOC106609529 coding upstream 45010 19903585 ~ 19907504 (+)
LOC110499945 LOC106609530 coding upstream 51707 19892477 ~ 19900807 (+)
LOC110499947 LOC106576403 coding downstream 16646 19973446 ~ 20008614 (+)
LOC110499953 NA coding downstream 98366 20055166 ~ 20092114 (+)
nmes1 nmes1 coding downstream 152325 20109125 ~ 20113891 (+)
LOC110499954 LOC106609519 coding downstream 168798 20125598 ~ 20176686 (+)
LOC110499956 LOC106576407 coding downstream 236308 20193108 ~ 20196983 (+)
G1714679 NA non-coding upstream 39357 19912847 ~ 19913157 (+)
G1714666 NA non-coding upstream 49125 19903054 ~ 19903389 (+)
G1714675 NA non-coding upstream 62983 19889322 ~ 19889531 (+)
G1714674 NA non-coding upstream 65188 19887064 ~ 19887326 (+)
G1714654 cl011 non-coding upstream 100914 19849367 ~ 19851600 (+)
G1714825 NA non-coding downstream 39549 19996349 ~ 19996552 (+)
G1714813 NA non-coding downstream 42834 19999634 ~ 20000255 (+)
G1714826 NA non-coding downstream 44124 20000924 ~ 20001199 (+)
G1714829 NA non-coding downstream 45479 20002279 ~ 20002499 (+)
G1714090 NA other upstream 328600 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1215078 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1451640 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1685006 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2283928 17666280 ~ 17668586 (+)
G1715392 NA other downstream 601622 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1041798 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2219163 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2762119 22718919 ~ 22784445 (+)

Expression


Co-expression Network