LOC110499943 (LOC106609521)


Basic Information

Item Value
gene id LOC110499943
gene name LOC106609521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20019191 ~ 20025740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576999.2
AAATCCATGACCTGGAAGTACCTTTTTAGTGTTGCTGTCGAGACACTGGATCTAGCAACCTCTATACAAAACGGTTTTATTTATCTTAGCTAACTAGGGTATTGTTAGCTTGAGTACATTTGTCAACTTTTTTATTTACGTTGCAATCGCTTTAATATAACGTATATTCTAGGCTTGGTCGCACTATCTAACGTTAACATCAAACTTTTTAGCTAGCTTGTTTCGAGGGCTTTTTGCTTTGCAAACTAGCCATGGATAACATTATTGATCCAACATCAGAACAAGgtctccctctgttctccttgCGTCTCCTGGTTCCACCTCTACGCCTGATGTGCGCTTTCATGTGGCAAGTGACTCAACAGCGTAATGTGATGCAGTATGGAAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAACTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGATGGTTTTAGAGTTGTGTCGCAGTAAGGGCACAGCTGACCTGCTGACCATCCAGGCCCACCTGGACATAATCCACACATTGACAGAAACATCTTTACACAAAGAGAGTCATGGTGATGAATTGGAGGCTTCAGATTCTAACTTTGTGGAGCTAGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCATTTCTTCCAGGAGGTGTTCCCAGTCCACTATGGCCCTCGGTATGACACAGCGCTGCAGACACTGGTGTGGGAGTTCCTCTCCAGACTGGAGGAGCTGCTGCCTATACCAGACCTCACGCAGACAACAGCATGGCTCGGTGCTGCCCCCTCTGTCCTGGAGGAATGTGGGCAGACTGTCTTTGACCCTGAACAACTGAAGACAGTGTTGCAGCACCATCAGCGTCATGGAAACCTGAACAATaGTCATGTCTCTAATTACACCACAGATACCATCCTGTCcacactgtccctccctccaaTAATCAGAGTTGTTATTAACTACGAACCAGACAACTCTGACAATGTGAGGCCATTCTCAGATGACGATGAAGACCACAATGAAATCCTGGATGAAGGCACTGGTAGATGTTTGGAGGATCTAGGACTGTCAACATCACAGGAACAGGAGGGTCTGTCACCTGCAGAGACCTCAGAGTTGGTTACTCCAGGACCCTGTGATGGTAAGGAAAATAAAAAAGAATTGAACTTGGATCATTCTCTCAACGTGATGGTGAATGCTGACGAGCCATCCCAGGTTCTTACCTGCACTCTGCCGCCATTCTCTCACAGTGAAATGGCCAACCTCTGCAAGACCGACCAAGTAGAAAAGGACAGAAAGCAGGTTGACAAGAAAGAAGAGGTGGTCAGAAAAGGGGACAAAAAGAATGTGATCAAACCGGTTGACAAGAAAAAAGAGGGATCCCCTGCACCCCAAAACAGGACTCATACATGTGAGTGTGGGAAGGTTTTCAAAAAACCATCACTGTTGACGCTACATATGGGAGTTCACACGATGCCACATCATTGTGACCAGTGTCCCAAACGATATGCTACTCCTGGGGCACTGAAAAAGCACCAGCTACTTCACACAGAAGAAAGACCATTCGCATGTGAACACTGTGACCGGAGGTACAGGAGTGCTTATGATCTCAAAGTGCATGTACGCATTCACTCTGGGGAGCGCCGTCACATGTGTACTATTTGTAAGAAGAGGTTTGCCCATCCAAGTACACTAGTGAGACACACGCGAATGCATGCTGGGGAGAAGAATTATTTATGTAGCATATGTGGTAAGGCATTCCTTAGCTCAGGAGAAGTGCGACTGCATACACGAACGCACACAGGAGAAAACCCCCACACCTGTAAACATTGTGGAAAGGGTTTCAAAGCATCTTGCCATCTTACGGTTCATCTGCGATCTCACACAGGCGAGCGTCCTTACACCTGCACCCAATGCCCCAAATCTTTCACTACCTCAGACTCTCTTAGAACGCACATATATATTCACACTGGGGAGAAACCTCACCAATGCTCAGAGTGTGGGAAAACATTTACTCAAAGGTGTAATATGGTAAATCATATGAGAAGAATTCACCGGTTAAGATTCTCCAAAAGCAGTCCAACAGAAAGAAACACAAAGTCTCGTAAAAATGCTTTGAGTTCGAAAGAAACTATGTAATAGGTCATTCCAATCAGAATATTGATTGGAATTATTGAGACAAGAAATTCCATGTATAATCCTGTTTTAAATACATGGTTTTACAGGTCCTCTTTTGTATATCAGATTATCatatcaaaatatgttttttaataAACTTCAAATCAAGGTT
>XM_021577000.2
AAATCCATGACCTGGAAGTACCTTTTTAGTGTTGCTGTCGAGACACTGGATCTAGCAACCTCTATACAAAACGGTTTTATTTATCTTAGCTAACTAGGGTATTGTTAGCTTGAGTACATTTGTCAACTTTTTTATTTACGTTGCAATCGCTTTAATATAACGTATATTCTAGGCTTGGTCGCACTATCTAACGTTAACATCAAACTTTTTAGCTAGCTTGTTTCGAGGGCTTTTTGCTTTGCAAACTAGCCATGGATAACATTATTGATCCAACATCAGAACAAGgtctccctctgttctccttgCGTCTCCTGGTTCCACCTCTACGCCTGATGTGCGCTTTCATGTGGCAAGTGACTCAACAGCGTAATGTGATGCAGTATGGAAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAACTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGATGGTTTTAGAGTTGTGTCGCAGTAAGGGCACAGCTGACCTGCTGACCATCCAGGCCCACCTGGACATAATCCACACATTGACAGAAACATCTTTACACAAAGAGAGTCATGGTGATGAATTGGAGGCTTCAGATTCTAACTTTGTGGAGCTAGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCATTTCTTCCAGGAGGTGTTCCCAGTCCACTATGGCCCTCGGTATGACACAGCGCTGCAGACACTGGTGTGGGAGTTCCTCTCCAGACTGGAGGAGCTGCTGCCTATACCAGACCTCACGCAGACAACAGCATGGCTCGGTGCTGCCCCCTCTGTCCTGGAGGAATGTGGGCAGACTGTCTTTGACCCTGAACAACTGAAGACAGTGTTGCAGCACCATCAGCGTCATGGAAACCTGAACAATaGTCATGTCTCTAATTACACCACAGATACCATCCTGTCcacactgtccctccctccaaTAATCAGAGTTGTTATTAACTACGAACCAGACAACTCTGACAATGTGAGGCCATTCTCAGATGACGATGAAGACCACAATGAAATCCTGGATGAAGGCACTGGTAGATGTTTGGAGGATCTAGGACTGTCAACATCACAGGAACAGGAGGGTCTGTCACCTGCAGAGACCTCAGAGTTGGTTACTCCAGGACCCTGTGATGAATTGAACTTGGATCATTCTCTCAACGTGATGGTGAATGCTGACGAGCCATCCCAGGTTCTTACCTGCACTCTGCCGCCATTCTCTCACAGTGAAATGGCCAACCTCTGCAAGACCGACCAAGTAGAAAAGGACAGAAAGCAGGTTGACAAGAAAGAAGAGGTGGTCAGAAAAGGGGACAAAAAGAATGTGATCAAACCGGTTGACAAGAAAAAAGAGGGATCCCCTGCACCCCAAAACAGGACTCATACATGTGAGTGTGGGAAGGTTTTCAAAAAACCATCACTGTTGACGCTACATATGGGAGTTCACACGATGCCACATCATTGTGACCAGTGTCCCAAACGATATGCTACTCCTGGGGCACTGAAAAAGCACCAGCTACTTCACACAGAAGAAAGACCATTCGCATGTGAACACTGTGACCGGAGGTACAGGAGTGCTTATGATCTCAAAGTGCATGTACGCATTCACTCTGGGGAGCGCCGTCACATGTGTACTATTTGTAAGAAGAGGTTTGCCCATCCAAGTACACTAGTGAGACACACGCGAATGCATGCTGGGGAGAAGAATTATTTATGTAGCATATGTGGTAAGGCATTCCTTAGCTCAGGAGAAGTGCGACTGCATACACGAACGCACACAGGAGAAAACCCCCACACCTGTAAACATTGTGGAAAGGGTTTCAAAGCATCTTGCCATCTTACGGTTCATCTGCGATCTCACACAGGCGAGCGTCCTTACACCTGCACCCAATGCCCCAAATCTTTCACTACCTCAGACTCTCTTAGAACGCACATATATATTCACACTGGGGAGAAACCTCACCAATGCTCAGAGTGTGGGAAAACATTTACTCAAAGGTGTAATATGGTAAATCATATGAGAAGAATTCACCGGTTAAGATTCTCCAAAAGCAGTCCAACAGAAAGAAACACAAAGTCTCGTAAAAATGCTTTGAGTTCGAAAGAAACTATGTAATAGGTCATTCCAATCAGAATATTGATTGGAATTATTGAGACAAGAAATTCCATGTATAATCCTGTTTTAAATACATGGTTTTACAGGTCCTCTTTTGTATATCAGATTATCatatcaaaatatgttttttaataAACTTCAAATCAAGGTT
>XM_036957204.1
AAATCCATGACCTGGAAGTACCTTTTTAGTGTTGCTGTCGAGACACTGGATCTAGCAACCTCTATACAAAACGGTTTTATTTATCTTAGCTAACTAGGGTATTGTTAGCTTGAGTACATTTGTCAACTTTTTTATTTACGTTGCAATCGCTTTAATATAACGTATATTCTAGGCTTGGTCGCACTATCTAACGTTAACATCAAACTTTTTAGCTAGCTTGTTTCGAGGGCTTTTTGCTTTGCAAACTAGCCATGGATAACATTATTGATCCAACATCAGAACAAGgtctccctctgttctccttgCGTCTCCTGGTTCCACCTCTACGCCTGATGTGCGCTTTCATGTGGCAAGTGACTCAACAGCGTAATGTGATGCAGTATGGAAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAACTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGATGGTTTTAGAGTTGTGTCGCAGTAAGGGCACAGCTGACCTGCTGACCATCCAGGCCCACCTGGACATAATCCACACATTGACAGAAACATCTTTACACAAAGAGAGTCATGGTGATGAATTGGAGGCTTCAGATTCTAACTTTGTGGAGCTAGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCATTTCTTCCAGGAGGTGTTCCCAGTCCACTATGGCCCTCGGTATGACACAGCGCTGCAGACACTGGTGTGGGAGTTCCTCTCCAGACTGGAGGAGCTGCTGCCTATACCAGACCTCACGCAGACAACAGCATGGCTCGGTGCTGCCCCCTCTGTCCTGGAGGAATGTGGGCAGACTGTCTTTGACCCTGAACAACTGAAGACAGTGTTGCAGCACCATCAGCGTCATGGAAACCTGAACAATaGTCATGTCTCTAATTACACCACAGATACCATCCTGTCcacactgtccctccctccaaTAATCAGAGTTGTTATTAACTACGAACCAGACAACTCTGACAATGTGAGGCCATTCTCAGATGACGATGAAGACCACAATGAAATCCTGGATGAAGGCACTGGTAGATGTTTGGAGGATCTAGGACTGTCAACATCACAGGAACAGGAGGGTCTGTCACCTGCAGAGACCTCAGAGTTGGTTACTCCAGGACCCTGTGATGGTAAGGAAAATAAAAAAGGTCGATGGATGATCTTGGCAAAGGATGcatgctcactaaaagggatgtaaacaaatgtgtgcacaacatttgagagaaataagctttttgtgtatatggaacatttctgggatcttttaattcagctcatgaaacatgagaccaacccTTTACAATATATATAGATGTATATGgtgatttatatatacagt

Function

NR:

description
zinc finger protein 829-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576999.2 False 2322 mRNA 0.45 8 20019191 20025740
XM_021577000.2 False 2304 mRNA 0.45 8 20019191 20025740
XM_036957204.1 True 1382 mRNA 0.45 8 20021903 20025740

Neighbor

gene id symbol gene type direction distance location
LOC110499944 LOC106576402 coding downstream 5712 20006500 ~ 20013479 (-)
LOC110499951 NA coding downstream 56837 19957241 ~ 19962354 (-)
LOC110501023 LOC106576392 coding downstream 160215 19843806 ~ 19858976 (-)
LOC110499939 LOC106609539 coding downstream 176953 19833743 ~ 19842238 (-)
LOC110499938 LOC106609532 coding downstream 187464 19822222 ~ 19831727 (-)
LOC110499960 LOC106609516 coding upstream 275700 20301440 ~ 20334668 (-)
LOC110499961 LOC106576411 coding upstream 309454 20335194 ~ 20360136 (-)
LOC110499964 LOC106609512 coding upstream 390659 20416399 ~ 20419086 (-)
LOC110499972 LOC106609508 coding upstream 446296 20472036 ~ 20476741 (-)
pex26 LOC106609506 coding upstream 455582 20481322 ~ 20484937 (-)
G1715092 NA non-coding downstream 12910 20004114 ~ 20006281 (-)
G1715089 NA non-coding downstream 16930 20001784 ~ 20002261 (-)
G1715087 NA non-coding downstream 18001 20000959 ~ 20001190 (-)
G1715084 NA non-coding downstream 25169 19993820 ~ 19994022 (-)
G1715082 NA non-coding downstream 26304 19992297 ~ 19992887 (-)
G1715098 NA non-coding upstream 1175 20026915 ~ 20027148 (-)
G1715114 NA non-coding upstream 25573 20051313 ~ 20051554 (-)
G1715138 NA non-coding upstream 29441 20055181 ~ 20055388 (-)
G1715139 NA non-coding upstream 31201 20056941 ~ 20057226 (-)
G1715142 NA non-coding upstream 35832 20061572 ~ 20061803 (-)
G1715085 LOC106609522 other downstream 23589 19994671 ~ 19995602 (-)
G1714755 NA other downstream 115734 19902785 ~ 19903457 (-)
G1714470 NA other downstream 401237 19599461 ~ 19617954 (-)
G1714475 NA other downstream 565513 19400335 ~ 19453678 (-)
G1713755 NA other downstream 1253387 18765460 ~ 18766379 (-)
LOC118942908 LOC106609500 other upstream 518349 20544089 ~ 20545776 (-)
LOC100301658 LOC100301658 other upstream 1425377 21451117 ~ 21452490 (-)
LOC110499990 lhfpl3 other upstream 1471917 21496754 ~ 21533441 (-)
G1716815 NA other upstream 1738799 21764539 ~ 21765210 (-)
G1716873 NA other upstream 1831699 21857439 ~ 21863447 (-)

Expression


Co-expression Network