LOC110499953


Basic Information

Item Value
gene id LOC110499953
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20055166 ~ 20092114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038552.1
ggagggaagagaggaaacaGCTCCTCTCCTGTTAAAGGATGTCAAGTCTTCAGCTGAGAGCTGTTGAGGAGCACtgatccatccatccttcctgcTCGTCTAGATGAATCTCACCACTGCGACTCCACAGCCTCTGCACAGCCTTGTAGgtggaggagatgaggagCTGCTCTGTGCCATGAAGACGAAGGTGAAAGTGTTCTCCTGCCCCAGGCTGAGTGGAGTGCACTGCATACAAAGATAAACTGATGTTCATATTCTACTATGGACGGTGTGTGGTACAGACTGACATCGACTGGAGCGGAACAGGCCACGAGGACCATTCAGCTCTACCATAGGGCCCCACAAAATCATTTGGAAGAAGTTGTTTCAGTGACCAACATGTCAGCAATTAGCACATTAACAGGTGGGTCGGCTGGTGCCACCATCTCACATACAGGTCACAAGATGTGCTGGGCTCACCCGCCATGAATCCCAAGAATCCCATCATGCCCTAGGAGTTTAAAAGCTCCAATCCAGCTCGAACTCAACCTGACATGACTCCAGTTCCCATCACCAACTTGACTCCAGTCTCTTGTTGTTCAGTCCTGCTGTTTCCACCCAGCAGTCTAGTTGTGACAGTGGCTTTCAACGAGAATCCAGTTGGCCTTCCCTCTCTTGTACCCCTCATTAACGTTGGCCCCCATGTCAGAGCCCTGGGCTGCAGAGGGGAAGGCTCTCATGGTGTCTCTGCTGTACGGAGAGCCAGGTCTGATCCCAGCCATGAGGAGCCCACAGGCGGAGAGCCCTGTTTAAAATTCCGCTCTGCAACGTGTCGGCTTTCCAATCCACCGGGATTGCATTATTAAACTTACACAAGCTCATTTCCATACAAAGCAGGATATCAGCGGCAGAGTCATGCATATTTATCGCCGTGTGCCTGGCTTACGCACGAATACACTCGCACAATAACCCGCACGCAGGCATAACTTAGTCGTGGTACATAAGTGAGGGAGGAAACCGAGGTGCATTCCTAATGGTTTGAGCATGAGATGTCCTGAGTGAGGATGGTCAGTGAAATCTACATGTCAATCACCTGACAAACCGACACATAAACAGGCAGtttctcacacacaaacaggggAGATGAGATGAGTTACACTTTGAGATCTGACGAGAAGTATATTAGTGATGATCTACACGCAGAGTCATGCACACACGGTCCAGCCAAGCCTCCACCTGTCCATGTTGACTGTTGCCTGCTAGTAGCTAGTTCCCTTaatgtccctgtctctgtgtctccccctgtCCCTACTTCCCTGCTGCCCCactgttcttctcctcctccactagTTTCCGAGCAccggtttctcctctcctcctcgcccTCTTTTCTTCCTTGCCCTCCTTCAGGTGATGtccgttctcctcctcctcctgtgagATTGCTGCTGTGTCTTATGGCTTTTTATTCCTACGTGAGGGTAGATGTGTTCATGTAGGGATAGAAGCCACTAAACACACGGTGAGAGGTCAACGTGCAGGCCAGTAGAGCCAAAGCTTCCTTTTCCACACAGAGAAAATAGCCTGCGGTGATGTTACAGTGGAATTTACTGTCTAACTCTAGGCCTACATGCACCCGTTAAGTTACTTCTaaacgggcctcccgggtggcgcagtggtctaaggctgtgccaccagagattctgggttcgagcccaggctctgtcgcagctggaagcgaccgggaggtccatggggcgacgcacaattggcccagcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038552.1 True 1762 mRNA 0.52 5 20055166 20092114

Neighbor

gene id symbol gene type direction distance location
LOC110499947 LOC106576403 coding upstream 48787 19973446 ~ 20008614 (+)
LOC110499946 LOC106609525 coding upstream 98366 19952514 ~ 19956800 (+)
LOC110499941 pkp2 coding upstream 103249 19939451 ~ 19951917 (+)
LOC110499949 LOC106609526 coding upstream 120565 19923790 ~ 19934601 (+)
ube2n LOC106609528 coding upstream 144394 19907699 ~ 19910772 (+)
nmes1 nmes1 coding downstream 17011 20109125 ~ 20113891 (+)
LOC110499954 LOC106609519 coding downstream 33484 20125598 ~ 20176686 (+)
LOC110499956 LOC106576407 coding downstream 100994 20193108 ~ 20196983 (+)
LOC110499957 LOC106609518 coding downstream 128321 20220435 ~ 20255165 (+)
LOC110499958 LOC106609517 coding downstream 175583 20267697 ~ 20294996 (+)
G1714829 NA non-coding upstream 52667 20002279 ~ 20002499 (+)
G1714826 NA non-coding upstream 53967 20000924 ~ 20001199 (+)
G1714813 NA non-coding upstream 54911 19999634 ~ 20000255 (+)
G1714825 NA non-coding upstream 58614 19996349 ~ 19996552 (+)
G1714922 NA non-coding downstream 26409 20118523 ~ 20118795 (+)
G1714940 NA non-coding downstream 89720 20181834 ~ 20182196 (+)
G1715010 NA non-coding downstream 242179 20334293 ~ 20334621 (+)
G1715009 LOC106609515 non-coding downstream 244984 20337098 ~ 20337621 (+)
LOC110499962 LOC106609514 non-coding downstream 299160 20364847 ~ 20392819 (+)
G1714090 NA other upstream 431252 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1317730 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1554292 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1787658 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2386580 17666280 ~ 17668586 (+)
G1715392 NA other downstream 466308 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 906484 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2083849 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2626805 22718919 ~ 22784445 (+)

Expression


Co-expression Network