nmes1 (nmes1)


Basic Information

Item Value
gene id nmes1
gene name nmes1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20109125 ~ 20113891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160604.2
AGACAGACGGTGCTCACAAGCACCTTGGAACTCTGTCAGtgacaggtgagacagacagcATCTATTGACCTGTTGCCTTATAGGATAGACCTACACAGATGAAGGATTTACTATACACAGTAAGAATTGATACCGAATggaatttgaaaaacaaaatgaagTTTGGATTGATTCAGATTATGAGGAAGAGGAAACAGGTGATTCCTCTGATTGGCTGCATGGCATTGTCTACTGCTGGAGCCATCTTTGCCTCCCTCTACTTCCTATTTACAAAGAATGATGTCATTTTAAATAAAAGTAGAATCCCTGAACCCTGGGAGGGAGTGGACCCATCTAAACCACAGAAGCTGGTCACCATCAACCAGAAGTGGAGGCCGATTGAAGAACTGGAACAGGTGAAGAGCATGACAAGGTGATCTCGCACGtgcgggctctctctctctcgctctctctctccaccctctccctttccctttcccctccccctccatcgGAATCATTTCGACACAGACTAGAGTCTCTAATACTGCACAATAGCTGACTATAAGTGTGACCAAAGCTATTTGTTTGTGAAACATAATGTATGTGTGAGGGTGAAATAAGTTATTGCAATTGAAAATGGGCATGGCTTGTGTTATTAATGATTCATGaggagtgtgtgcctgtgtgatcCAATCTAAAGCAATGGCTGtaggatgacaatgccaccaacagaacaattaaaaatgtaaatgaataacttc
>TU1964921
TGCCTTATAGGATAGACCTACACAGATGAAGGATTTACTATACACAGTAAGAATTGATACCGAATggaatttgaaaaacaaaatgaagTTTGGATTGATTCAGATTATGAGGAAGAGGAAACAGGTGAGTTGCTCTCTATTTCTTGTTTTGGATCAGTGTTTCTATGGTTTCTGATGAAGGTAATTATTTCCTCCTATCCTAGCAAGGTTATTCCCCTCAGGAATTTAAAGGAAATTCCAAATAGAGAATTTAAGCTTGTCTTTACTATCAGGTTTATCTATTTATGGGAATTTCATTTCCCAAGCTTCCTGGATTGAAATACTGTATGAGGACCTTAATTCTCAAAAGGAGTTAAGAACAACCCAGTTATCTACTATAAGAAGTATAAGGCCCTCATCCTGACACCTCTCTCCCAGGTGATTCCTCTGATTGGCTGCATGGCATTGTCTACTGCTGGAGCCATCTTTGCCTCCCTCTACTTCCTATTTACAAAGAATGATGTCATTTTAAATAAAAGTAGAATCCCTGAACCCTGGGAGGGAGTGGACCCATCTAAACCACAGAAGGTGATTTATAACATTACAAGCACTATTTCTATGTCTATTTCTGTCCTCTCTACGTTGGCGTTGGCATCAGTAGCCATTTGTGTCAGTGGTTCCTTCTCTGTTCTGCTTAGTCACACAAACAGAGCAGCGTTGCCAAGTATAACTATAACTCACTCATCGTGGGCGGGAATTATCCCATTTTAACTGTCATCTAAACGTCATTTAAACTAATCTAAACGTCTGTATTCATGGGTTATTCTCTGCATGGGCACCTATTGGTGAAGGAGACAGGCGCCAGTAGTGTTACATGATGGGTGATTGATTGACTGTGGATGTAGTGAGAAGCtagcagtgttggggaagctactctgaaaataaaGTTTAATAAGCTACCAGTTACTTCACACTGAAAGAAGTTAAGCTACTCTAAAGCTACCCCTGtgaaaaatatagtttacttaactaaagcTGCGTTGAATAAGTAGTTCACTACATTGTAACTACTTCATGaaaaattatcatatgtaaaTCTGAATTATAGGTTGgtaatttagcctattaaacacaaaaattatgtttcaagtgagaattaggtAAGTCTTGTTCTGAAAAGGAAAGTAAATGATTGCTTACTTCACCCATATTTAATTTTCTTTCTGCAAAAAAAGTAGTGTGTAGCTCCAgaagttagctacaccgctacatggtaaagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaCTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagttgTTAGCTACAGCACTACATGGTAAAGAAGTAGTGTGtggttccagtagttagctacagcaTTACATATTAAAGAAGTAGTGTGtggttccagtagttagctacaccactacatggtaaaacagttgttatctactttaaaaaaaaatctaaatagacAAAGAACATGTAGTTCAGTTCTCCCCAACACTGGAAGCTAACAATTCCATTTCAatgcagtcaattcaggaaaCTGACATTCTAATCAAGCAATGAGGAAAAATGTCACTTTGCATTGTGAATTGACCAAAtgtaaatggaattgaccccaaccctggtgagCATTTGTAGTAAAATGTGATCAGTAGTGGTGCTTGTTGTTGTAAGTGTTGCTGTTGTGTAAGTGACTGTGTTGTTCCTATTCTGAAGCTGGTCACCATCAACCAGAAGTGGAGGCCGATTGAAGAACTGGAACAGGTGAAGAGCATGACAAGGTGATCTCGCACGtgcgggctctctctctctcgctctctctctccaccctctccctttccctttcccctccccctccatcgGAATCATTTCGACACAGACTAGAGTCTCTAATACTGCACAATAGCTGACTATAAGTGTGACCAAAGCTATTTGTTTGTGAAACATAATGTATGTGTGAGGGTGAAATAAGTTATTGCAATTGAAAATGGGCATGGCTTGTGTTATTAATGATTCATGaggagtgtgtgcctgtgtgatcCAATCTAAAGCAATGGCTGtaggatgacaatgccaccaacagaacaattaaaaatgtaaatgaataacttcaccatgcccaAACaggtattcaatgtctgctttttacatttttacccatctatgTCCTTTACCCATCTATGTTCTTATTTGCGAGGctttgaaaaacctccctggtctttgtggttgtatCTATTTTTGAAATTCAGTGTTTGGGAcccagataattgtgtgtgtagggtacagaaaagcatgtttaacactattattgcacacagtgagtccatgcaacttattatgttgAATTGTTTAGCaaatttcagcttttcatgtttTATTCGTTTGTAAAAATTTCATACAACAAAATTCCACTTTAAAATGatatgtgtgtaggccagtgacaaaaaatatatacatttgatacattttaaattcagcctgtaacacaacaaaatgtggagaaagttaaggggtgtgaatactttctgaaggcactgtattatctCATTATAAAATCATTGTTTAAGGAAAACAACTATGACCACTGATCTGACCTATGACCCCTAAAATGCCGATACTGCACTCTGCCTTTGTATGACCTTCAACAACTAAACACATCAAAAAAAGAAACCTCATCTCACTattcaactgcgtttattttcagcaaacttgacatgtgtaaatatttgtatgaacacagcagattcaacaactgagacataaactgaacaaattccacagacagaaatggaataatgtgtccctgaacaaaggggggggggggggggggggggatcaaaatcaaaagtaacagtcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcatggactgcaccatatttgccagttcttgctgtgacatgttaccccactcttccaccaaggcacctgcaagttcccggacatttctggggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccaggctcttcgctggccatggcagaacactgacattcctgtcttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgtcatgctcaaatcaaatcaaattttattttctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaacacacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcaatcccactccagagtacaggtctcggtgtaacgcacattccttcgacgataaacgagaatccgacaatcacccctggtgagacaaaacctcgactcgtcagtgaagagcactttttgccagtcctgtctggtctagacggtgggtttgtgcccataggcgacgttgttgccggtgatgtctggtgatgacctgccttacaacaggcctctctcagcctattgtggacagtctgagcaatgatggagggattgttcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgttctgcaggtgtgatgtttcgGATGtacgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccgtcctgtctccctgtagcgctgtcttagacgtctcacagtacggacactgcaatttattgccctggccacatctgcagtcctcatgcctccttgtagcatgcctaagccacgttcacgcagatgagcagggaccctgggcatctttcttttcgtgtttttcagagtcagcagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccatctgtaagctgttggtgtcttaacaaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaatttattttagatttttacgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttatattggtAATGCAAAAGCAAAGTGCACTATCTAAAATCTAAATGTGTTTATCCAACTTTCTTGGCTttctcatagtgtgtgtgtgtaagggcgtCATGATTGGGATAACCTGAACTCAGGGCCCGATAGAATATCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160604.2 False 743 mRNA 0.43 4 20109125 20111713
TU1964921 True 4447 TUCP 0.41 2 20109198 20113891

Neighbor

gene id symbol gene type direction distance location
LOC110499953 NA coding upstream 17011 20055166 ~ 20092114 (+)
LOC110499947 LOC106576403 coding upstream 102746 19973446 ~ 20008614 (+)
LOC110499946 LOC106609525 coding upstream 152325 19952514 ~ 19956800 (+)
LOC110499941 pkp2 coding upstream 157208 19939451 ~ 19951917 (+)
LOC110499949 LOC106609526 coding upstream 174524 19923790 ~ 19934601 (+)
LOC110499954 LOC106609519 coding downstream 13885 20125598 ~ 20176686 (+)
LOC110499956 LOC106576407 coding downstream 81395 20193108 ~ 20196983 (+)
LOC110499957 LOC106609518 coding downstream 108722 20220435 ~ 20255165 (+)
LOC110499958 LOC106609517 coding downstream 155984 20267697 ~ 20294996 (+)
LOC110499962 LOC106609514 coding downstream 253134 20364847 ~ 20392819 (+)
G1714887 NA non-coding upstream 33092 20075820 ~ 20076033 (+)
G1714885 NA non-coding upstream 33938 20074987 ~ 20075187 (+)
G1714829 NA non-coding upstream 106626 20002279 ~ 20002499 (+)
G1714826 NA non-coding upstream 107926 20000924 ~ 20001199 (+)
G1714922 NA non-coding downstream 6810 20118523 ~ 20118795 (+)
G1714940 NA non-coding downstream 70121 20181834 ~ 20182196 (+)
G1715010 NA non-coding downstream 222580 20334293 ~ 20334621 (+)
G1715009 LOC106609515 non-coding downstream 225385 20337098 ~ 20337621 (+)
G1714090 NA other upstream 485211 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1371689 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1608251 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1841617 18247128 ~ 18268691 (+)
G1712658 NA other upstream 2440539 17666280 ~ 17668586 (+)
G1715392 NA other downstream 446709 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 886885 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2064250 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2607206 22718919 ~ 22784445 (+)
G1717520 NA other downstream 2709039 22820752 ~ 22879923 (+)

Expression


Co-expression Network