LOC110499956 (LOC106576407)


Basic Information

Item Value
gene id LOC110499956
gene name LOC106576407
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20193108 ~ 20196983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577015.2
ctggcaacaactctatTGGACATTCTGACAGTgagcatgctccctcaactttagacatctgtggcattgtgttgtgtgacaaaacattttagtggccttttacaaggtgcacctgtttaatgatcgtgctgtttaatcagcgtcttgatatgcaacacctgtcaggGGGATAGATTATTttagcaaatgagaaatgctcacttacagggaTTTAAATAAATTggagcacaacatttgagagaaataagcaacGCTTGTATTTGTCGGGGACACGAGGAAACAAGTCGCCTAATTGGTTTAATAGCCTAATATCGATGTGCCATACGTAGTTTGTGCGCAACCGCTACCACAAAAAGGTGAACTGAACAACACGCTTCCTGAGTCCTGAAAGCTCTGCTTTCATTCGGACGCTTTTGAAGTCTGTTTAGAGATGACAACGCCGCTTTTGAACTGCGCAATCATGTGGCATTCTGCTTGAAAGTGTATTTTATTGTATGAAGTATTGGATATAATTTTTTTACGGAATATAGCCTACGCATCTTGTGTGAGATGAAAACAGTTCCAGAGAGCGAAATACGTTCATTGGTTATGGTCACAATACGAAGAAACGATGTCGCATTATTGGATCTTCATCGTTTGGAAATTTCTTTTTGAATGGGACGCTTAAGAGTGGCTCCTAAGATGTTTGCAACTTCTTCACCAACAACCTGAGACTCAGCCCTCAAACAGTAGAATGTGTCCCGTTGTGCCACAACCACTGTGTGTGTCTATTGACGGGCACTTACATGGCTTTAGGGTTACCTTGGCATTCCTCCTGTCCATGTGTCTGTCCCGTATGATGTTCACGGCCGCCTGCCCACCACCCTGCCTGTGTGCCAGTGACATCGTCTCCTGCAGTGGTCGCAATCTGTCAACCGTTCCCCCTGACCTCCCTGGCTATGTCACCCGATTGGACCTCAGCCACAATGTCCTCACTGCTCTGCTCTTGGATTGGTCAGACCGGCGTCTGGACAGGCTGACTGTACTGGTCCTCAGCCGAAATGCCATTATCCATCTGGCACCGGACGCCTTTGCCCCCACCCCTCACCTTCGCCACCTGGACCTCTCGTCCAATGGGCTGTCTTGGCTCAATGCATCTGCCTTCCATGGGCTCGGGGAACTGGAAGTGCTGCTTCTGTTTGGAAACCGCATCTGTCAGACCATGGCGGGAGCCTTTGAGGGGCTGAGCAGCCTGGAAAGGCTGTATCTGGGCGGGAACAGACTGACTGCCTTCCCCCTGGAGCTCTACCAGCGAAATGGGGCTCTGCCACGCCTGCGTTTCCTGGATCTGTCGACGAACATGGTGAGGCAGGTGCCCGTGCAGAGCCTACTCTCTCTGGCCACCTGGCAGCAGGGTGGCATCTACTTGCAGGGGAACCCGTTGGTGTGTGACTGTGCCTTGCGCGCCATGCTGGAGTACTGGGAGAGGAGGCAGTACTGTCCCCTACTAGACTTCAGGGAGGAGTATCCATGCAGTCTGGGTCAGGAGTGGCTGAATTGTTCTGGCAACCCTCAGGGTGGGTTCCATGGAACTGTAGAAGTGTCTTACCAGGCAGAGCCTGGCGATTGGCTTATGGTGCCGTGCCCTGGCATTTCTCTCCCCTTCCAGGAAGAGGTGGTGGTGTTCTGGGTGACCCCGGGCGATGGATCCCCGGCACTGGGCGTAACAGACGATCAGAGCAGCCGCCTCACGGTCCTCACCAACGGTACCCTGGAGATCCGAGGGGCTCTCCGTGGGGATTCAGGGACTTACTCATGCGTGGCAGTCCGCGGTCGACACCGGAGCTCCAACGAGACTTTGGAGGTCACCGTCTCCGTAGGTAACCCCAGCGGACCAGGCAAGAGCGGGGAGGAACGTAGCAGCGGCGGGGCGCATTTTAACACGGCATTTACCACGCTGGCGTCCTGTGTGGTCAGCATCGTCCTGGTGCTCCTCTACCTGTACCTCACTCCCTGCCGTTGCCATGGTGGAAATGCCAGGGGAGTTGGTGGGTGCGGCGGGCGAGCCATGCTCCTCTGTGCAGACCCCAGAGAGGCGGAGCTCACAGACCGAAGGGTCACCGGTGGAAAGAGGGTGGCCTTCCTCGAAACGGGGGACGAGCACCCCCACAAATGCAGTGCCAAGCACCCAGTAATGGACACTGCAGCCACAGAGGGCATATTGAAGAACGGAAGCAGGGCCTTGGAGCAGGTCCACGAAGAACACCTTGTGTAGCATTCAGGGTGTGTCCTTCAAGCCCCACCAGGCTTTCATGGTTCTCAAAATGTAAAATATTAACCTCGCATTGAGAATCCATACATGAAAGTAGTTTTAACACCATTTATTTCACAACAGTGATCAGACTGCTTTTTAATGTTATACCTACTGTGTGGACAGATATGGAAACAGATTGTCAAAGTTTTATACATATGAACTTGCAGATAAAGAAATAGTTCCAAACAAAATACATTCTGTGGAACACCTGTGTGAAATTCATTATGTAGGCATTCATGGATCTATAATGTtattacaggatacacatggtatacactgtCCATCCAAATAATTACTTGCAGGTTCCTAGTCTGTCATAAGGTGCCATGCGCTATTAGGAATGATCATAACAGGGCGAAAACACTAAAAATGTATTCTTAATGTATTACATGCAGGTTGAATGGATGCATTCAGACAAAGATGTCAGTCGACCCTGATCAGTTTCTGGGGACTAGCCAGCTCTAGCCCCAAGCCTCCCATGACCTATATACTATTGTTGTTCTCAGTTATTTTTGCAGGTGTGACCGTGAATAGAGTTTTTCAAGGTGAGGAAGGGACTGATATGTTACTGCTGGTATTAATATATTGAACTAACTTAGAAATTGACATTCATTTAGAATAACTAAATTCCGTTGTCTTCATTTAAGTATATATGCATTTCAGATGAGTAGgctttttttttatctgacaATGATCTCGAAACAGTGCAAGAGACCTGCTTTTATACACCATTTTAGACACCATTTTAATAGAAAGAAATCACTTAATTTTATATTAGTGTTAGGCCGTAATGGAATAAAGCATTTTCACGTCCTTAGA

Function

NR:

description
amphoterin-induced protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577015.2 True 3112 mRNA 0.49 2 20193108 20196983

Neighbor

gene id symbol gene type direction distance location
LOC110499954 LOC106609519 coding upstream 16422 20125598 ~ 20176686 (+)
nmes1 nmes1 coding upstream 81395 20109125 ~ 20113891 (+)
LOC110499953 NA coding upstream 100994 20055166 ~ 20092114 (+)
LOC110499947 LOC106576403 coding upstream 186729 19973446 ~ 20008614 (+)
LOC110499946 LOC106609525 coding upstream 236308 19952514 ~ 19956800 (+)
LOC110499957 LOC106609518 coding downstream 23452 20220435 ~ 20255165 (+)
LOC110499958 LOC106609517 coding downstream 70714 20267697 ~ 20294996 (+)
LOC110499962 LOC106609514 coding downstream 167864 20364847 ~ 20392819 (+)
LOC110499963 LOC106609510 coding downstream 206706 20403689 ~ 20414330 (+)
med21 LOC106609513 coding downstream 220504 20417487 ~ 20421625 (+)
G1714940 NA non-coding upstream 10912 20181834 ~ 20182196 (+)
G1714922 NA non-coding upstream 74313 20118523 ~ 20118795 (+)
G1714887 NA non-coding upstream 117075 20075820 ~ 20076033 (+)
G1714885 NA non-coding upstream 117921 20074987 ~ 20075187 (+)
G1714829 NA non-coding upstream 190609 20002279 ~ 20002499 (+)
G1715010 NA non-coding downstream 137310 20334293 ~ 20334621 (+)
G1715009 LOC106609515 non-coding downstream 140115 20337098 ~ 20337621 (+)
G1715039 NA non-coding downstream 203816 20400799 ~ 20401003 (+)
G1715040 NA non-coding downstream 204606 20401589 ~ 20401806 (+)
G1714090 NA other upstream 569194 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1455672 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1692234 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1925600 18247128 ~ 18268691 (+)
G1715392 NA other downstream 361439 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 801615 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 1978980 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2521936 22718919 ~ 22784445 (+)
G1717520 NA other downstream 2623769 22820752 ~ 22879923 (+)

Expression


Co-expression Network