LOC110499960 (LOC106609516)


Basic Information

Item Value
gene id LOC110499960
gene name LOC106609516
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20301440 ~ 20334668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577020.2
CCTAGTGTAATGTGTATTGCAGCGACACTGTGCGGTGCTGTTTAAACTTCACACGTCTCAGACAGACATCGAGACATGTGGCCGAGACGTTCGTAAATGTGTAACGAGTTAGCAGTGCAATCTATTCGGCTATATTCAGGTCTTATAGCTTTGGAGTCTAATCAATACACGGAAATAAGTGGGACaacaaaaaatttaaaaaaccaCGCCAGTTTTCTAGCTATTGATTTAGCTTCGGGGGTCATCTGGTCATTAGGGACAAAGCAACACTGTGCCAAAGATGACGGGTGAATCGGGAAATGACGGACAGACCCCAGAGGGAGACCCGGAGCCGGAAGAGGCAGAGCGGTGTCCTATCTGCCTGGGCGCCCTGGGCCGTTGTGTCCTGGCCATGCCTGACAGCTGCTGCCATGTATTCTGCCTCAGCTGCCTCCTCAGATGGGCAGAGTTGCAGGCAGTTCCATCCTGCCCAGTGGACAGGCAGCCTTTCAGTGTTGTCTACAAACGTGATGCTGTGCTGGGATGTGTGACGGTTCCTGTGAAGAAGAGAGTCAGCCAATCAGAGCCAGAGAAGTGTGGCTGCACAGACCCGGAAGCCAGTGGCTGTTTGTTGAAGAAAAaaggaggaagatggaggagacCGAAGACGGAGAGGACATCAGAAGCTAAAGGCCTTATTCGGAAATGCAGCGATGATGACCCCTCTGTGTTGAGCAAGAAGAAGGTGAGAGGACCTCTGTGCTCTTGGTCTGCGGCCCAGACAGGCACAGCAATGGGGACTCTGACACAGTGCATTGCAGAACCCCTTTGGGTGCCCGAGGAGGAGCCGTCTGAGGATGACTGTAAACAGTGTAGCCGCAAAACACAAGACTGCCCATTTCTGCCTGTTGCTGTACCCGTTCCTGCCAGTGGCAACTCGAGGCAGTTGTTCCATCCCTCTGAGTGGAGTAGCAGCCCCTTTCCTCTGAGACCCCTCTCACCGTTCTCTACTACTGCTTCACCTCTCGGCTCGGGGCATTTTGTCTTTCAGGGAAGAGTTTGCGCAGTCACCTGCcccaaaggagaggagaagaagggcaCACGTGGATCTGGCTCCAAAGGCCCCTCCAAACAGACAGAGGCCCTGACGACTAGGCGCTCTGGCCGCCACAGCAGGGTTGAGGAACAAGCTCCTACACAAGACCCTGCATCTTCGCAGTCCCACTCTTCAGATTCCGACACTTCCACAAACCCACCCACAAAAGCGGGCAAAAGCACCGCAGCagctggtaagaagaagggcaaaTGGGCAGCTCAGCGAAAGCCCAACGCCAGGAGGAAGGCCCAAGTGAGAAAAAAGGCCTCCAAAGTCATCCTCAGTAGTCCATCAGGAAGTGAGGAAGAGGAAgccaaagaggaggaggaggaattcGAGCAGCAGAGGAAAGAGGTAGAGGAAAGGGAGCAGCTCTCAGACACTGCAGTGAGCCCACAGGCTGTGCAGCGCACCTCCAGCCCTACCGAGGAGGAAGGCCGTCCCGAACCTTCTGCATGTGATGCCCTGAAGGACACTGAGGACCAGCCATGGGAAAATTATGATCTTTCTGAGGAAGAGGAACGTGggaaggaagaagaagaggaggatggtgaggaagaggaccGGAAGTCACCGTCGTCAGATGTAGAGCTGAATACCCCTGGGCTCTCCCCCGACAGGGACCAATGTGCAGGGGAGAAACACCCAGACCAAATAGAAGACCCAGAGAAAAGCAACTCACCCACCTCTTCCAACTCACCAGAGAGACCATTGGAGAGCCCCCAGTCTGGGCAGTCAGGACAACTTGGGGAGGAAGATGCTGATGCTGTGGAAGCCACTAACGATCCAACAGAAGTGAAATCAGATGATGAAGCCTCAGTGAAGGAGGAGAAAGCAGAGGTCTCTCCCTGCCCCACTGCAGAGCCTGAATCTTGTACTGGCTCGACTCGTTGTGAATCTCCAGACGGTAATGTGTCCCAGAGAGGTCAAGGCACCTCAGAAGCAAAAATGTCCGAGGAGGACAGGCATGATCCAAAGGATGTCATAAATGAAAAATCAGCAACCGGCAGCAAAGAGGACGGTCTGTCTGAGGATGACACAGAAGCAATACCAATGGACTGTGATTCACCCAGCAGTGAGCGCAGCACCAAGCTGGCCTCTGATCCACCAAAAGAGACTGAAAGTACAGCTCACGAGTCCACAAGCCAGGCTACGGAAGACAAGAGGAATGGTAGCAGGCAGGAGCGGGAGAGCTCGGTCAGAGAGGAAAAGGTAGAGGAAAGGAAGAATGGCAGGCAGCGCAAGTCGCGCTTCCACTCTGCTGCCACCACTTGGTCTCCCAAGAGAGAGTCGAAGCAGGACTCGTTGAGGAGGTCGCGCTCCAGATCTCAGGAGCGCAACAAGGAGCGCCAGGCCTCGGGCAGCCGCAGCAGGGAACGGGACGCTGAGAGGGACGCCCCCAGGACGGACCGTATCCGTGACCGTAGCCGTGAGAGGAAAAACAGGAAGCGCTCTAAGAGCCGTTCCAGATCTAGTTCCAGGTCCAGAAACAGGTCCTACCGAAGAGGGTCATCCCCGGAGCGCCCAGACTCAGGGGGACAGTCACCACGGAAGAGAGATCGCTGGACTGGAGATGGATGGAGGGCTGGGCCGGGTAGCGACCCCTCTCGAAGGAATTTCCCAGAGAGGCCAGCCAGAGACGCGGGCCGCTCTGAAAACGGCGGCTTTGCAGATGTTTCCCCCAGCAGGGAAAATCCTGACTGGGTTATGGAGAAGGCACGTGCTGACACAGAGGCCAGGGTGACAAGTGTGCCTCGCTGGGAAGATAAAGGCTGGGGTGGAGATCGTGGACGAGGCACAGGACGAGGCCGGGGCGCCTACGGAACCTCCAACCAACAGGGGGAGCAGGCAGAAAACCGCTGGCAGCCCAGAAACACATTCTCAGGGACCTCAAACAATTCAGGGAGCGACGCGTACAGCCGATTCAACGAGAACCGTGGCGGCCGCAGGAAGGAGCCTGAGATGGGCGAATCGATGATGGACCGCTCTGGCTGGTCATCAGCTTCCAGCTGGGCTGTGCGGAGGACACTCCCGGCAGACGTGCAGAACTATTACTCCAGGAGAGATCGAGGGGGAGGTGCAGGCTCTGGCAGCTGGAGCAGGCAGGAGGAGACGTCAACAGCAGACCCAGCTCAGAGTGAGACCAATGCCCAGCCCAATGCGGGTGGAGAAGCTCCACCCGCCCTGAACGTCATGCCTCCCCAAATGAACGTCCTGCATTACCCAATGGGCCCGCGAGGCCCACCTGTCAGCCTGCAACCACCCCCCTTCGGGATGCCTCCTCAGGTCCCCATGCACCACCACTCCTCAGTGCCTCTCCTGCAGGTCCCTGTGACAGCTGCCCAGggcctcccaccaccaccaccaccaccacctcccatgCAGCAGGGCAGCATGACGGCCATACAGGCAGATAGCCGCACAACACAGATGATGAGCAGCATGGCAGGCCATGGCAAAGCCCCCTTCATGCCCACCATGACCAAAGTAGGTGGCGCCAACACAGTCCAGGCCCACAGCATGGCCATGCCATCCTCCACCACCCAACACAGCAGGGCTGCCCCCCCAGACAGCTCCAAGAAAGAAAAGATCCATGAGAGAGCTGTCAATGAAGTGAAAGCAGCCATGAAACCCTACTACCAAAACAAGGACATCACCAAGGACGAGTACAAGGAGATTGTACGCAAAGCAGTTGAAAAAGTCTGCCACAGCAAGAGTGGAGAGGTGAACTCTGGGAAAGTGGCAAACTTGGTGAAGGCCTACGTGGACAAATACAAACACGCTCGCAAGAAATGAACCCTGACATCTGCTGAGGGGGAAACGGTCTCAGCCCATCTGCTTAAGTGCAATTTCTACCAGGTGTAACAGCCTCCCGGCTGACAGACTGGAGCCCGACTTTTGATATCTCTTACTTTACCTTGAAGATTTTTCTATAGATTTCATATTTTGTTTAGAAATAATCCAATCGGAAACTGTAGTGTGAGAAGACCGTTATTTCAAGTAGATCTTGTGGCTTGGGAACTACTATGAGATAGATGCCCAGAGTAGCTGGAGCAGTAAGGTTAGCACCTGTTCTCTGGTGAGATGGACATGGTGCTATGGGTAGTACAGAGGAGAGCACCCTCTCGTGGAGCCAGCTGGTATGAtgaatttctccctctctccaccgggGACCTCCTAATGACTTCTTAGttaaaaaaatattgtaattgtttctcattttgtttttgttttataaaTATTATATTATGATTATTCTGGAGAAAGCCTAGGTAAATGTGCATTGCCTTTATGACTCTCTAGGCTGCatcacacaggcagcccaattctgatatttttccactaattggtcttttgaccaatcagatcagctctggaaaagatctgattggtcaaaagagcaagaaaaatatcagaattggtctgCTTGTGTAAACTCGGCCTTAGTCATCACAGCTCAAAGCTTGAGTGTAATTGTATCAGGGACTTCATTGGTTGAGAGTTGGTGATCAGTTGTCCAATCAGCAGTGAATTTGTAGCGTACGGTATGGGTCTGGCAGATCAGGTGAAAACGGCCATGTCCCTTACTTGTTAAATGTGCTGCGTAAACGTGCGAAATAACTAGAGAGCAATGAAATAAATGAGCTGCTTcatgtctggctatgtgtgtgtgtttgtggtcatACATGGAAAAGTTATTGACCCCATCCATCAATTTTAACATCAGAATTTCTAttttttaaaggtccaatgcagctgttttctctatcaaataatttctgggtaacaattactGTTACTGTGGTTGTTTTCAATAAAAATTGtaagaaaatgtatgtaaa

Function

NR:

description
protein SCAF11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577020.2 True 4917 mRNA 0.53 15 20301440 20334668

Neighbor

gene id symbol gene type direction distance location
LOC110499943 LOC106609521 coding downstream 275700 20019191 ~ 20025740 (-)
LOC110499944 LOC106576402 coding downstream 287961 20006500 ~ 20013479 (-)
LOC110499951 NA coding downstream 339086 19957241 ~ 19962354 (-)
LOC110501023 LOC106576392 coding downstream 442464 19843806 ~ 19858976 (-)
LOC110499939 LOC106609539 coding downstream 459202 19833743 ~ 19842238 (-)
LOC110499961 LOC106576411 coding upstream 526 20335194 ~ 20360136 (-)
LOC110499964 LOC106609512 coding upstream 81731 20416399 ~ 20419086 (-)
LOC110499972 LOC106609508 coding upstream 137368 20472036 ~ 20476741 (-)
pex26 LOC106609506 coding upstream 146654 20481322 ~ 20484937 (-)
LOC110499966 LOC106609503 coding upstream 160491 20495159 ~ 20499298 (-)
G1715272 NA non-coding downstream 27191 20273999 ~ 20274249 (-)
G1715257 NA non-coding downstream 59448 20241218 ~ 20241992 (-)
G1715252 NA non-coding downstream 65260 20234999 ~ 20236180 (-)
G1715246 NA non-coding downstream 76657 20224056 ~ 20224783 (-)
G1715242 NA non-coding downstream 80983 20220170 ~ 20220457 (-)
G1715131 NA non-coding upstream 135967 20470635 ~ 20471643 (-)
G1715363 NA non-coding upstream 184976 20519644 ~ 20520281 (-)
G1715369 NA non-coding upstream 192740 20527408 ~ 20528513 (-)
G1715378 NA non-coding upstream 205628 20540296 ~ 20540518 (-)
G1715091 LOC106576402 other downstream 275745 20011310 ~ 20025695 (-)
G1715085 LOC106609522 other downstream 305838 19994671 ~ 19995602 (-)
G1714755 NA other downstream 397983 19902785 ~ 19903457 (-)
G1714470 NA other downstream 683486 19599461 ~ 19617954 (-)
G1714475 NA other downstream 847762 19400335 ~ 19453678 (-)
LOC118942908 LOC106609500 other upstream 209421 20544089 ~ 20545776 (-)
LOC100301658 LOC100301658 other upstream 1116449 21451117 ~ 21452490 (-)
LOC110499990 lhfpl3 other upstream 1162989 21496754 ~ 21533441 (-)
G1716815 NA other upstream 1429871 21764539 ~ 21765210 (-)
G1716873 NA other upstream 1522771 21857439 ~ 21863447 (-)

Expression


Co-expression Network