rhno1 (cl032)


Basic Information

Item Value
gene id rhno1
gene name cl032
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20499181 ~ 20501970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577058.2
CATCAATTGCTGGTTCATTTAGCTGAAAAGGAAGCTTCCTCCTCCTAAGGATCAGGGGCCTTCTTGGGCTCTGTCTCATTCTGCCCAGATTACAGAACTGGCCCTTTGACTTCACTTGATGTCTGAAGAGATAACAGCTCCTCAACCATGACCTCTGATGCCCCGTAAAACAAGAAAGAAATCTTTGCCATACTCACAGAAGCCGTCGCTGTTGTTTTTTGAGCCACCACTTGATGACGCCAGATACCACAATGTGCCTCAAGTGAGAGGCGCACTCAATCCCAAGTCATTTCTAGATGAGGAGCAGCGACAGAACAGCTGCACAGCCTGTAGTTCTTGGGTGAGTCCACAGTTTGATCAGTTACCGCCCCCTGCACCCAGAGGAAGGCGAGGGAGGAAGAAGTGCCTCTCTGCACCAAGCATTCTTGACAGGAGTTCTCACTTATCCAGAAAAGGTAGTGTTTGCAAGTTCCAAGCCTTATCCTTTCAGAGAAGGTCAACAGCCCAACCTCTCCATCAAAAGCATGCACATAGAAAGAAAGCTGTAGAATCTGCTCTTGGGGCCCATGAGGAGCAGCAGGGCTTGCAAGTTCATAAGCTTGGTTCTCTAAGTACAGAGTACCTAAGTAACCAAGATGAAACGGAGACACCAACACAGATAACTTCTCTCAGGAAAGGGACAGCTGAGAGGAGACGGTTGTCAGAGGTAACACCGGAAGATGCAGCATCAACCTCCAGCAGATGTGTGGGGGTCCTTAGAACGTCAGCTGCCAATGTTGCCAGACATGGCAAGAGCCCAACGTCATGCTCTGCTCAGACTCCTGCCTCAGCAACACACCACACCCCTGGCACGGACaatgttttctccccaattgatGTAGTGACTCCAGAGTTACACCATGATGGAAGTTCCTCCTTTCTTCGCCTCCTGTTGCCACAGCCGATGACCCCGCCACATACTGTGACTTCAGAGATTTTAGCAACAGACACCCCAGAGAGGGACTATGGAGTCAAGGttacatggaggaggaggaaagggctGATGAGGTTGCTGATGGACCGAGGTTATCTTTCAAGTGCAGAGGCACTAATTAGCATCTAATCAACATAACTGTAAATGTTGACATCATTTTACTATCATGTTCTGCAATTAACACTGAATTGTAGTTAACACCACATGAATAAATTAGTCCACTGATTGAAAGTGATATGTTGCAATAACTATAATATTATTGAGTCCACTCAATTGTTTTGCTGCTCGGAATAACGTTGTCCATGTGCAGTTGGTAGTTCAGCCCATTGTGGATGCGGCTCTGTCTAGGTTCTTGTTTTCTTTGTATCATGGGTCCACATTAAATCTTTTTTAAAATGG
>XM_021577056.2
ATCAGTGTTAACCATTATGTTAACGGCAAGACTTGGAGGACAGCGAAGCAAATGCAAAATGTTTGCCCTTTCTGATTCTGACATTATTTATTCAAAACATTGATAGCTAGCTACTTCTGACATGCAGTTTACACCCAGCTCCTCAACCATGACCTCTGATGCCCCGTAAAACAAGAAAGAAATCTTTGCCATACTCACAGAAGCCGTCGCTGTTGTTTTTTGAGCCACCACTTGATGACGCCAGATACCACAATGTGCCTCAAGTGAGAGGCGCACTCAATCCCAAGTCATTTCTAGATGAGGAGCAGCGACAGAACAGCTGCACAGCCTGTAGTTCTTGGGTGAGTCCACAGTTTGATCAGTTACCGCCCCCTGCACCCAGAGGAAGGCGAGGGAGGAAGAAGTGCCTCTCTGCACCAAGCATTCTTGACAGGAGTTCTCACTTATCCAGAAAAGGTAGTGTTTGCAAGTTCCAAGCCTTATCCTTTCAGAGAAGGTCAACAGCCCAACCTCTCCATCAAAAGCATGCACATAGAAAGAAAGCTGTAGAATCTGCTCTTGGGGCCCATGAGGAGCAGCAGGGCTTGCAAGTTCATAAGCTTGGTTCTCTAAGTACAGAGTACCTAAGTAACCAAGATGAAACGGAGACACCAACACAGATAACTTCTCTCAGGAAAGGGACAGCTGAGAGGAGACGGTTGTCAGAGGTAACACCGGAAGATGCAGCATCAACCTCCAGCAGATGTGTGGGGGTCCTTAGAACGTCAGCTGCCAATGTTGCCAGACATGGCAAGAGCCCAACGTCATGCTCTGCTCAGACTCCTGCCTCAGCAACACACCACACCCCTGGCACGGACaatgttttctccccaattgatGTAGTGACTCCAGAGTTACACCATGATGGAAGTTCCTCCTTTCTTCGCCTCCTGTTGCCACAGCCGATGACCCCGCCACATACTGTGACTTCAGAGATTTTAGCAACAGACACCCCAGAGAGGGACTATGGAGTCAAGGttacatggaggaggaggaaagggctGATGAGGTTGCTGATGGACCGAGGTTATCTTTCAAGTGCAGAGGCACTAATTAGCATCTAATCAACATAACTGTAAATGTTGACATCATTTTACTATCATGTTCTGCAATTAACACTGAATTGTAGTTAACACCACATGAATAAATTAGTCCACTGATTGAAAGTGATATGTTGCAATAACTATAATATTATTGAGTCCACTCAATTGTTTTGCTGCTCGGAATAACGTTGTCCATGTGCAGTTGGTAGTTCAGCCCATTGTGGATGCGGCTCTGTCTAGGTTCTTGTTTTCTTTGTATCATGGGTCCACATTAAATCTTTTTTAAAATGG
>XM_021577055.2
CCATTATGTTAACGGCAAGACTTGGAGGACAGCGAAGCAAATGCAAAATGTTTGCCCTTTCTGATTCTGACATTATTTATTCAAAACATTGATAGCTAGCTACTTCTGACATGCAGTTTACACCCAGGTACGTCGTGTGATATACGAAGGCCTCCTCAACCATGACCTCTGATGCCCCGTAAAACAAGAAAGAAATCTTTGCCATACTCACAGAAGCCGTCGCTGTTGTTTTTTGAGCCACCACTTGATGACGCCAGATACCACAATGTGCCTCAAGTGAGAGGCGCACTCAATCCCAAGTCATTTCTAGATGAGGAGCAGCGACAGAACAGCTGCACAGCCTGTAGTTCTTGGGTGAGTCCACAGTTTGATCAGTTACCGCCCCCTGCACCCAGAGGAAGGCGAGGGAGGAAGAAGTGCCTCTCTGCACCAAGCATTCTTGACAGGAGTTCTCACTTATCCAGAAAAGGTAGTGTTTGCAAGTTCCAAGCCTTATCCTTTCAGAGAAGGTCAACAGCCCAACCTCTCCATCAAAAGCATGCACATAGAAAGAAAGCTGTAGAATCTGCTCTTGGGGCCCATGAGGAGCAGCAGGGCTTGCAAGTTCATAAGCTTGGTTCTCTAAGTACAGAGTACCTAAGTAACCAAGATGAAACGGAGACACCAACACAGATAACTTCTCTCAGGAAAGGGACAGCTGAGAGGAGACGGTTGTCAGAGGTAACACCGGAAGATGCAGCATCAACCTCCAGCAGATGTGTGGGGGTCCTTAGAACGTCAGCTGCCAATGTTGCCAGACATGGCAAGAGCCCAACGTCATGCTCTGCTCAGACTCCTGCCTCAGCAACACACCACACCCCTGGCACGGACaatgttttctccccaattgatGTAGTGACTCCAGAGTTACACCATGATGGAAGTTCCTCCTTTCTTCGCCTCCTGTTGCCACAGCCGATGACCCCGCCACATACTGTGACTTCAGAGATTTTAGCAACAGACACCCCAGAGAGGGACTATGGAGTCAAGGttacatggaggaggaggaaagggctGATGAGGTTGCTGATGGACCGAGGTTATCTTTCAAGTGCAGAGGCACTAATTAGCATCTAATCAACATAACTGTAAATGTTGACATCATTTTACTATCATGTTCTGCAATTAACACTGAATTGTAGTTAACACCACATGAATAAATTAGTCCACTGATTGAAAGTGATATGTTGCAATAACTATAATATTATTGAGTCCACTCAATTGTTTTGCTGCTCGGAATAACGTTGTCCATGTGCAGTTGGTAGTTCAGCCCATTGTGGATGCGGCTCTGTCTAGGTTCTTGTTTTCTTTGTATCATGGGTCCACATTAAATCTTTTTTAAAATGG

Function

NR:

description
uncharacterized protein LOC110499973

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577058.2 False 1372 mRNA 0.47 3 20499181 20501970
XM_021577056.2 False 1373 mRNA 0.46 3 20500250 20501970
XM_021577055.2 True 1386 mRNA 0.46 3 20500261 20501970

Neighbor

gene id symbol gene type direction distance location
si:ch73-352p4.8 LOC106609505 coding upstream 4469 20486341 ~ 20494712 (+)
LOC110499965 LOC106609509 coding upstream 42197 20439852 ~ 20456984 (+)
LOC110499971 LOC106609511 coding upstream 67116 20423336 ~ 20432065 (+)
med21 LOC106609513 coding upstream 77556 20417487 ~ 20421625 (+)
LOC110499963 LOC106609510 coding upstream 84851 20403689 ~ 20414330 (+)
LOC110499967 LOC106609502 coding downstream 147 20502117 ~ 20536425 (+)
LOC110499976 LOC106609498 coding downstream 85260 20587230 ~ 20631763 (+)
LOC110499978 mtpn coding downstream 370096 20872066 ~ 20890939 (+)
LOC110499979 LOC106576425 coding downstream 429503 20931473 ~ 20943290 (+)
LOC110499980 LOC106576426 coding downstream 452606 20954576 ~ 21004439 (+)
G1715053 NA non-coding upstream 29641 20469208 ~ 20469540 (+)
G1715051 NA non-coding upstream 31810 20467078 ~ 20467371 (+)
G1714871 NA non-coding upstream 40658 20458130 ~ 20458523 (+)
G1715040 NA non-coding upstream 97375 20401589 ~ 20401806 (+)
G1715039 NA non-coding upstream 98178 20400799 ~ 20401003 (+)
G1715066 NA non-coding downstream 38260 20540230 ~ 20540450 (+)
G1715383 NA non-coding downstream 44895 20546865 ~ 20547140 (+)
G1715696 LOC106582599 non-coding downstream 294042 20796012 ~ 20796250 (+)
G1715703 NA non-coding downstream 298650 20800620 ~ 20801129 (+)
G1715705 NA non-coding downstream 303650 20805620 ~ 20805915 (+)
nmes1 nmes1 other upstream 385290 20109125 ~ 20113891 (+)
G1714090 NA other upstream 875267 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1761745 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1998307 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 2231673 18247128 ~ 18268691 (+)
G1715392 NA other downstream 56452 20558422 ~ 20558751 (+)
G1717161 LOC106576319 other downstream 1673993 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2216949 22718919 ~ 22784445 (+)
G1717520 NA other downstream 2318782 22820752 ~ 22879923 (+)

Expression


Co-expression Network