LOC118942908 (LOC106609500)


Basic Information

Item Value
gene id LOC118942908
gene name LOC106609500
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20544089 ~ 20545776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038555.1
AAAGGAAGTGCAACAGAAATGTCAAGTGATGCGAGAAAGAGCTGAGCCTTTGACCAAGCAGATTTCAACCCTAATAGAGACTATTCAGATGATCAAGGACATGGATGTTGACCCTATCACATTCCTTCAGAGCCGAATCCACAGCAACAGACACTGCAGATGCTGAGGTAGTGTCAGGAGCATTCATTGACATAGCCAAGCATGTGGGATCTCTGAAATTCAAGGTCTGGAAGAAGATGCTTGGGATCATTTACTATACTTCGGTGACCATGGATCCAAAACACAGTGTCTGCAAGGCTCATAATGACTCAtgacctgaccactgtgacataCAGCGAGGAGagtcagaaccttccagaaaatCCTGAGAGGCTTAAAATGGGAGTGTTGGGTTCTGAAGGTCACAGTAAAAGGCAGACATTTTTGGGATGTAGAGGTAGGAGAAAGTGATAACTGGACCCTGGGAGTAGCCAAAGAGTCAATTGTGCGCAACAAGCCACTCAAAATGGAGCCTCAGAGCGGATTGTGGAGCATCAGGTATATTAGTGGGAAACACAGAGTATGTGTAAAACCACGCATCCAGATCAAGCTGGATGAGAGCCCACGAGTGATCAGAGAACATCTGGACTGTGACCAAGGGGAGCTGACATTCTGTGATCCCACTAAGAGCACTATTCTGTACACCTTCAATGATACATTCACTGAAAAAGTGTTCCCATACTTTTACAGTACAAATCAGTTTGTCCCACTGCACCTTTTGTCAGTTAGCCCCAACTTTGGGCAGAATATAAACATGAGTGGAGACAGGTTGCCAGGTTTATAATATGTGGGGACAAATATCTACTAACGTGTATCAACTAGAGGGACCCCATTGTGTGAACTTTAGTTGAATCCAGCTCCATGTAAATAGCTGTAAAACTTGCCTCAACACAAAGCATACTATGGGTATAAGTAGTGTAATCTAATTGATGCCAATGGAATGTGGTATGGTAACAACTGTCTACCTCATAATG
>TU1965436
CAGGACAGCTGCCCTGAGAAAGGAAGTGCAACAGAAATGTCAAGTGATGCGAGAAAGAGCTGAGCCTTTGACCAAGCAGATTTCAACCCTAATAGAGACTATTCAGATGATCAAGGACATGGATGTTGACCCTATCACATTCCTTCAGAGCCGAATCCACAGCAACAGACACTGCAGATGCTGAGGTAGTGTCAGGAGCATTCATTGACATAGCCAAGCATGTGGGATCTCTGAAATTCAAGGTCTGGAAGAAGATGCTTGGGATCATTTACTATACTTCGGTGACCATGGATCCAAAACACAGTGTCTGCAAGGCTCATAATGACTCAtgacctgaccactgtgacataCAGCGAGGAGagtcagaaccttccagaaaatCCTGAGAGGCTTAAAATGGGAGTGTTGGGTTCTGAAGGTCACAGTAAAAGGCAGACATTTTTGGGATGTAGAGGTAGGAGAAAGTGATAACTGGACCCTGGGAGTAGCCAAAGAGTCAATTGTGCGCAACAAGCCACTCAAAATGGAGCCTCAGAGCGGATTGTGGAGCATCAGGTATATTAGTGGGAAACACAGAGTATGTGTAAAACCACGCATCCAGATCAAGCTGGATGAGAGCCCACGAGTGATCAGAGAACATCTGGACTGTGACCAAGGGGAGCTGACATTCTGTGATCCCACTAAGAGCACTATTCTGTACACCTTCAATGATACATTCACTGAAAAAGTGTTCCCATACTTTTACAGTACAAATCAGTTTGTCCCACTGCACCTTTTGTCAGTTAGCCCCAACTTTGGGCAGAATATAAACATGAGTGGAGACAGGTTGCCAGGTTTATAATATGTGGGGACAAATATCTACTAACGTGTATCAACTAGAGGGACCCCATTGTGTGAACTTTAGTTGAATCCAGCTCCATGTAAATAGCTGTAAAACTTGCCTCAACACAAAGCATACTATGGGTATAAGTAGTGTAATCTAATTGATGCCAATGGAATGTGGTATGGTAACAACTGTCTACCTCATAATGCTTGTATGCTTGTACATAATGCTTGTTTAAAGCAGTTGTTACATTATGTAAAATATGTAAAGTACAGTCAATTATCTAAATAAAATTTTAAAGTTTC

Function

NR:

description
PREDICTED: nuclear factor 7, brain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038555.1 False 1013 mRNA 0.44 3 20544186 20545758
TU1965436 True 1128 TUCP 0.42 3 20544089 20545776

Neighbor

gene id symbol gene type direction distance location
LOC110499970 LOC106576422 coding downstream 643 20540947 ~ 20543543 (-)
LOC110499966 LOC106609503 coding downstream 44888 20495159 ~ 20499298 (-)
pex26 LOC106609506 coding downstream 59249 20481322 ~ 20484937 (-)
LOC110499972 LOC106609508 coding downstream 67445 20472036 ~ 20476741 (-)
LOC110499964 LOC106609512 coding downstream 125100 20416399 ~ 20419086 (-)
LOC110499977 LOC106609497 coding upstream 92259 20632042 ~ 20724888 (-)
LOC110499981 LOC106609495 coding upstream 459360 21005118 ~ 21012097 (-)
LOC118942909 NA coding upstream 858006 21403764 ~ 21408873 (-)
LOC110499988 LOC106609398 coding upstream 867214 21412972 ~ 21423875 (-)
LOC100301658 LOC100301658 coding upstream 905362 21451117 ~ 21452490 (-)
G1715378 NA non-coding downstream 3668 20540296 ~ 20540518 (-)
G1715369 NA non-coding downstream 15673 20527408 ~ 20528513 (-)
G1715363 NA non-coding downstream 23905 20519644 ~ 20520281 (-)
G1715131 NA non-coding downstream 72543 20470635 ~ 20471643 (-)
LOC110499961 LOC106576411 non-coding downstream 184447 20335194 ~ 20360136 (-)
G1715397 NA non-coding upstream 14183 20559941 ~ 20560152 (-)
G1715526 NA non-coding upstream 24176 20569934 ~ 20570236 (-)
G1715527 NA non-coding upstream 25782 20571540 ~ 20571754 (-)
G1715529 NA non-coding upstream 33703 20579461 ~ 20579757 (-)
G1715530 NA non-coding upstream 38165 20583923 ~ 20584151 (-)
G1715091 LOC106576402 other downstream 518491 20011310 ~ 20025695 (-)
G1715085 LOC106609522 other downstream 548584 19994671 ~ 19995602 (-)
G1714755 NA other downstream 640729 19902785 ~ 19903457 (-)
G1714470 NA other downstream 926232 19599461 ~ 19617954 (-)
G1714475 NA other downstream 1090508 19400335 ~ 19453678 (-)
LOC110499990 lhfpl3 other upstream 951899 21496754 ~ 21533441 (-)
G1716815 NA other upstream 1218781 21764539 ~ 21765210 (-)
G1716873 NA other upstream 1311681 21857439 ~ 21863447 (-)
G1717061 LOC106576327 other upstream 1394136 21939894 ~ 21944260 (-)

Expression


Co-expression Network