LOC110499979 (LOC106576425)


Basic Information

Item Value
gene id LOC110499979
gene name LOC106576425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20931473 ~ 20943290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577065.2
AGCCACTAACAGAGCAGCCATTCCCTGGGTCTTGATGACTTCCAGATGACAGCCCAGACAGCCTGGCCCGAGAGAACTCAGCACTcagtcacagacagagagagaggggggaggcagagatagggtaggggaggagagagagaaacagacagacaaaggaaAGGATGAAGCAGTTGCATGTGAAGTGGTTTAGCAGTGCTCCAGTCAGCGTTCTTACCTCATTCTCCTGATGGTTGTTGGTACACAGCTCTCTCCAGCTGGGGCCTGGCTGGCTGCTGTGATTAGCTGGTGACTGATCCACATTCAGATCCcattgagacagacagacgacagggcagtgtcagtgtgtgtgtgctgggccGAGAGTCAGCATGATGCATCAGTGGGGTCTACTCATCACTGTGTTCTACTGCCAGCTGTTCCTGGCTGCTGCTCAACACTGGAGGAAAGGTCAAAGAATAGGTGTGAAGGAGGTGGCTCAGCGAATGGTCTCATCTGAGATCAGAATACCTGCCTTAGCTGCATTTAGCTCAGGAGCTGCCTTTAGCTCAGCAGTCTTGTGGTATGCAAGGGACCAAGGTTGGAACCCAGTTGCCCTTTACCCATCAGCCTTTAGAGTGAAGCGTGGCACACACTCATTGGTCAACCCCACCTTCCAGAACTCTGTGGAAGATGTTAACCTGCTGTTTGAGATCCTGCTGGCAGGCCTGCAGATCGAGGGTGAGGACAAGCCCTTCGTGATCCCAGACATGGAGCTGGCGTCTCTGAGGTCGGTCCAAAAGCTGGAGGTTATCTGTGAAGACGTCCTGCCCAAGAGACTATCCGAGATCAGACGTTTGACCTCCCACCTGTCCCAGCGCAGAGGTGCCCTGAGCAGGGAGGACTTTGAGCGCACAGTGCTCACTATGGTGTACACTGCCCAGACTCTGGCTCATACCACCTCCCAACACCAGAAGGCGCTGTGGGGAGACGCCCTGCTGCAgctgttcagggccatacaagaAGATCTGACGCCCCCACCCAGGACACCTCAGCACTAGTGTTATGGACATGTGGACACATTATTTtagataatataatatactgatTATTTTATACTGTAAAACAAGAGCATTTGAAGGATGTTTTCTATTGAGTTGTATTGTATTATCAAAATGACTGTTCTGATAATGTAATATGTTTGGTTATGATCAAATGTTATGATCTAATCATATTGCAAGGAGGGTGTGGGAAAAGGAGGGATGTGAACTATATCTTGTTCATGTTCTATCTATTGGATTCCGCCTTGTTCCAGGACTTCAGATGTaaacaaacattttaaatattttatcaGTCACTCTGTCATCATGATTCATAACAGGTCTTTATCAAATCTTCTGTCATAATCTTCTCAGCTGTTTATCACAATCACATAATCTTTCCCCAGCACAGTCCTATGGCGAAAAGGAGCTTCGGATGAAGACAGGGGAATCAATTTGCTCAGCTTATTTCTCTGTAATTGATattataataaaataatgat
>XM_021577066.2
GGTCTTGATGACTTCCAGATGACAGCCCAGACAGCCTGGCCCGAGAGAACTCAGCACTcagtcacagacagagagagaggggggaggcagagatagggtaggggaggagagagagaaacagacagacaaaggaaAGGATGAAGCAGTTGCATGTGAAGTGGTTTAGCAGTGCTCCAGTCAGCGTTCTTACCTCATTCTCCTGATGGTTGTTGGTACACAGCTCTCTCCAGCTGGGGCCTGGCTGGCTGCTGTGATTAGCTGGTGACTGATCCACATTCAGATCCcattgagacagacagacgacagggcagtgtcagtgtgtgtgtgctgggccGAGAGTCAGCATGATGCATCAGTGGGGTCTACTCATCACTGTGTTCTACTGCCAGCTGTTCCTGGCTGCTGCTCAACACTGGAGGAAAGCCCTTTACCCATCAGCCTTTAGAGTGAAGCGTGGCACACACTCATTGGTCAACCCCACCTTCCAGAACTCTGTGGAAGATGTTAACCTGCTGTTTGAGATCCTGCTGGCAGGCCTGCAGATCGAGGGTGAGGACAAGCCCTTCGTGATCCCAGACATGGAGCTGGCGTCTCTGAGGTCGGTCCAAAAGCTGGAGGTTATCTGTGAAGACGTCCTGCCCAAGAGACTATCCGAGATCAGACGTTTGACCTCCCACCTGTCCCAGCGCAGAGGTGCCCTGAGCAGGGAGGACTTTGAGCGCACAGTGCTCACTATGGTGTACACTGCCCAGACTCTGGCTCATACCACCTCCCAACACCAGAAGGCGCTGTGGGGAGACGCCCTGCTGCAgctgttcagggccatacaagaAGATCTGACGCCCCCACCCAGGACACCTCAGCACTAGTGTTATGGACATGTGGACACATTATTTtagataatataatatactgatTATTTTATACTGTAAAACAAGAGCATTTGAAGGATGTTTTCTATTGAGTTGTATTGTATTATCAAAATGACTGTTCTGATAATGTAATATGTTTGGTTATGATCAAATGTTATGATCTAATCATATTGCAAGGAGGGTGTGGGAAAAGGAGGGATGTGAACTATATCTTGTTCATGTTCTATCTATTGGATTCCGCCTTGTTCCAGGACTTCAGATGTaaacaaacattttaaatattttatcaGTCACTCTGTCATCATGATTCATAACAGGTCTTTATCAAATCTTCTGTCATAATCTTCTCAGCTGTTTATCACAATCACATAATCTTTCCCCAGCACAGTCCTATGGCGAAAAGGAGCTTCGGATGAAGACAGGGGAATCAATTTGCTCAGCTTATTTCTCTGTAATTGATattataataaaataatgat

Function

NR:

description
protein FAM180A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577065.2 False 1522 mRNA 0.48 4 20931473 20943290
XM_021577066.2 True 1351 mRNA 0.47 3 20931500 20943290

Neighbor

gene id symbol gene type direction distance location
LOC110499978 mtpn coding upstream 40534 20872066 ~ 20890939 (+)
LOC110499976 LOC106609498 coding upstream 299710 20587230 ~ 20631763 (+)
LOC110499967 LOC106609502 coding upstream 395048 20502117 ~ 20536425 (+)
rhno1 cl032 coding upstream 429503 20499181 ~ 20501970 (+)
si:ch73-352p4.8 LOC106609505 coding upstream 436761 20486341 ~ 20494712 (+)
LOC110499980 LOC106576426 coding downstream 11286 20954576 ~ 21004439 (+)
LOC110501024 LOC106609493 coding downstream 74917 21018207 ~ 21039654 (+)
LOC110499983 magi2 coding downstream 144064 21087354 ~ 21350552 (+)
LOC110499985 LOC106609397 coding downstream 413733 21357023 ~ 21410835 (+)
LOC110499986 LOC106576355 coding downstream 482280 21425570 ~ 21448889 (+)
G1715762 NA non-coding upstream 82958 20848238 ~ 20848515 (+)
G1715752 NA non-coding upstream 89527 20841654 ~ 20841946 (+)
G1715751 NA non-coding upstream 89897 20841359 ~ 20841576 (+)
G1715743 NA non-coding upstream 97251 20834007 ~ 20834222 (+)
G1715728 NA non-coding upstream 107032 20824103 ~ 20824441 (+)
G1715851 NA non-coding downstream 63872 21007162 ~ 21009324 (+)
G1715855 NA non-coding downstream 69003 21012293 ~ 21015504 (+)
G1715859 NA non-coding downstream 72555 21015845 ~ 21016095 (+)
G1715945 NA non-coding downstream 195361 21138651 ~ 21139053 (+)
G1715392 NA other upstream 372722 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 817582 20109125 ~ 20113891 (+)
G1714090 NA other upstream 1307559 19384972 ~ 19754609 (+)
G1713384 NA other upstream 2194037 18734791 ~ 18737436 (+)
G1713262 NA other upstream 2430599 18497147 ~ 18500874 (+)
G1717161 LOC106576319 other downstream 1232673 22175963 ~ 22180897 (+)
G1717516 NA other downstream 1775629 22718919 ~ 22784445 (+)
G1717520 NA other downstream 1877462 22820752 ~ 22879923 (+)
G1717517 NA other downstream 1906602 22849892 ~ 22851407 (+)

Expression


Co-expression Network