LOC100301658 (LOC100301658)


Basic Information

Item Value
gene id LOC100301658
gene name LOC100301658
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21451117 ~ 21452490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160489.1
CGACATGAGTCGATCCATTTTCTGAACAACCCTCCATCTCGACCAATCATAGCGCTCGTTGTTGGTTGGTCGCCCTCTGTGTCAAGGTGGAACGACATTTTGAGAAAACAACACTGGGGGAAGAGAGAAACAACTATGTCTTCTTTAGGAAGGGCCATGGGTGTCCTTAGGGCCGGGACGCAGCTTCTTACACGTGGACCTCAGAAAATAGTAATCCGAAAAGCTGGTGGTGGACCACACATAGAGGCCCAGTACAGGCAATTCCCACAACTCACCAAGAGCCAGACGTTCCAAGCAGAGCTCCTCAGCAGTGCCATGTGGTTCTGGATCCTGTGGCACTGCTGGCATGACCCAGATGCAGTAATGGGTCACTTCCCATGGCCTGATGCATCCGCATGGACAGATGAGGAACTGGGGATCCCAGCTGACGATGAGGAATGAGGTGCCCTCTACCCCCAGGTGTGCCTTTTGTCCTGTCTACATCAGTCTTCTCCACCACAGGATCAGTGACGCATCCAAGGGATGTTTGTCAATGAGAATGTCTTGTCCTCTGATGAAAGATTGTGTTCATCACGCAACAGATCATAAGTCATAAACTGTTGGTTAGGATGGGAAATGGAATGCTTATTCAGTACAGTAATGCGATTGTTCATGCACGAGAGCCCTTCTGTAACAAGATGTGTTAGTTAATATGCCCATTTCAATTAGGTTCCTTACTGTAGCAGTGGCATGTTGTATAAGTACTTATCTATTTCTTGCATTTCTAGAccttgtgtgtgtgcacagtcgCTACCTGGAGGTTAAGGGTGTCCCGAGAGGCTTTGTTGTACATAGACAAATAAAATTCAATTGATTCTAAAA
>TU1966786
GTCGCCCTCTGTGTCAAGGTGGAACGACATTTTGAGAAAACAACACTGGGGGAAGAGAGAAACAACTATGTCTTCTTTAGGAAGGGCCATGGGTGTCCTTAGGGCCGGGACGCAGCTTCTTACACGTGGACCTCAGAAAATAGTAATCCGAAAAGCTGGTGGTGGACCACACATAGAGGCCCAGTACAGGCAATTCCCACAACTCACCAAGAGCCAGACGTTCCAAGCAGAGCTCCTCAGCAGTGCCATGTGGTTCTGGATCCTGTGGCACTGCTGGCATGACCCAGATGCAGTAATGGGTCACTTCCCATGGCCTGATGCATCCGCATGGACAGATGAGGAACTGGGGATCCCAGCTGACGATGAGGAATGAGGTGCCCTCTACCCCCAGGTGTGCCTTTTGTCCTGTCTACATCAGTCTTCTCCACCACAGGATCAGTGACGCATCCAAGGGATGTTTGTCAATGAGAATGTCTTGTCCTCTGATGAAAGATTGTGTTCATCACGCAACAGATCATAAGTCATAAACTGTTGGTTAGGATGGGAAATGGAATGCTTATTCAGTACAGTAATGCGATTGTTCATGCACGAGAGCCCTTCTGTAACAAGATGTGTTAGTTAATATGCCCATTTCAATTAGGTTCCTTACTGTAGCAGTGGCATGTTGTATAAGTACTTATCTATTTCTTGCATTTCTAGAccttgtgtgtgtgcacagtcgCTACCTGGAGGTTAAGGGTGTCCCGAGAGGCTTTGTTGTACATAGACAAATAAAATTCAATTGATTCTAAAACAT
>TU1966787
GACCAATCATAGCGCTCGTTGTTGGTTGGTCGCCCTCTGTGTCAAGGTGGAACGACATTTTGAGAAAACAACACTGGGGGAAGAGAGAAACAACTATGTCTTCTTTAGGAAGGGCCATGGGTGTCCTTAGGGCCGGGACGCAGCTTCTTACACGTGGACCTCAGAAAATAGTAATCCGAAAAGCTGGTGGTGGACCACACATAGAGGCCCAGTACAGGCAATTCCCACAACTCACCAAGAGCCAGACGTTCCAAGCAGAGCTCCTCAGCAGTGCCATGTGGTTCTGGATCCTGTGGCACTGCTGGCATGACCCAGATGCAGTAATGGGTCACTTCCCATGGCCTGATGCATCCGCATGGACAGATGAGGAACTGGGGATCCCAGCTGACGATGAGGAATGAGGTGCCCTCTACCCCCAGGTGTGCCTTTTGTCCTGTCTACATCAGTCTTCTCCACCACAGGATCAGTGACGCATCCAAGGGATGTTTGTCAATGAGAATGTCTTGTCCTCTGATGAAAGATTGTGTTCATCACGCAACAGATCATAAGTCATAAACTGTTGGTTAGGATGGGAAATGGAATGCTTATTCAGTACAGTAATGCGATTGTTCATGCACGAGAGCCCTTCTGTAACAAGATGTGTTAGTTAATATGCCCATTTCAATTAGGTTCCTTACTGTAGCAGTGGCATGTTGTATAAGTACTTATCTATTTCTTGCATTTCTAGAccttgtgtgtgtgcacagtcgCTACCTGGAGGTTAAGGGTGTCCCGAGAGGCTTTGTTGTACATAGACAAATAAAATTCAATTGATTCTAAAACAT

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial-like

GO:

id name namespace
GO:0005747 mitochondrial respiratory chain complex I cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160489.1 False 861 mRNA 0.47 3 21451120 21452490
TU1966786 False 796 TUCP 0.47 3 21451117 21452422
TU1966787 True 824 TUCP 0.47 3 21451117 21452450
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499988 LOC106609398 coding downstream 27245 21412972 ~ 21423875 (-)
LOC118942909 NA coding downstream 42247 21403764 ~ 21408873 (-)
LOC110499981 LOC106609495 coding downstream 439023 21005118 ~ 21012097 (-)
LOC110499977 LOC106609497 coding downstream 726232 20632042 ~ 20724888 (-)
LOC118942908 LOC106609500 coding downstream 905362 20544089 ~ 20545776 (-)
LOC110499990 lhfpl3 coding upstream 44264 21496754 ~ 21533441 (-)
LOC110499993 LOC106576353 coding upstream 97840 21550207 ~ 21553820 (-)
LOC110499996 cl031 coding upstream 139173 21591663 ~ 21593204 (-)
LOC110501026 acss3 coding upstream 428546 21881036 ~ 21910483 (-)
LOC100136271 myf5 coding upstream 499985 21952475 ~ 21955086 (-)
G1716616 NA non-coding downstream 38397 21409408 ~ 21412723 (-)
G1716573 NA non-coding downstream 97460 21353246 ~ 21353660 (-)
G1716559 NA non-coding downstream 100577 21327289 ~ 21350543 (-)
G1716558 NA non-coding downstream 120376 21328775 ~ 21330744 (-)
G1716560 NA non-coding downstream 125067 21325383 ~ 21326053 (-)
G1716636 NA non-coding upstream 3197 21455687 ~ 21457172 (-)
G1716639 NA non-coding upstream 14435 21466925 ~ 21467236 (-)
G1716640 NA non-coding upstream 15249 21467739 ~ 21515338 (-)
G1716657 NA non-coding upstream 39584 21492074 ~ 21496154 (-)
G1716694 NA non-coding upstream 93914 21546404 ~ 21546693 (-)
G1715091 LOC106576402 other downstream 1425425 20011310 ~ 20025695 (-)
G1715085 LOC106609522 other downstream 1455518 19994671 ~ 19995602 (-)
G1714755 NA other downstream 1547663 19902785 ~ 19903457 (-)
G1714470 NA other downstream 1833166 19599461 ~ 19617954 (-)
G1716815 NA other upstream 312049 21764539 ~ 21765210 (-)
G1716873 NA other upstream 404949 21857439 ~ 21863447 (-)
G1717061 LOC106576327 other upstream 487404 21939894 ~ 21944260 (-)
LOC110500001 rps16 other upstream 533771 21986217 ~ 21990859 (-)

Expression

LOC100301658(LOC100301658) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC100301658(LOC100301658) Expression in each Bioproject

Bar chart with 21 bars.
LOC100301658(LOC100301658) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network