LOC110499992 (orc5)


Basic Information

Item Value
gene id LOC110499992
gene name orc5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21535960 ~ 21546505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577084.2
CAACTGCTTTAACCTGGCGGTGATTGGCTTGCAAAGAGACAGGACATTGTGACGTGGCATTTGGAGACGCGGGAAACTCTTGACATGTTTACAGGGATGTTGGATATGGGTAATTTCACTGCATGAACTCCAACCAGGCCAAACTACTTTGTAAGTCATACACTTTACGGTTTGGTGTGTGTCTAAAAGTAGCCTAAACTATGGCAGCACAACTTCAGCACCTAGGGTATGAGGATGAAAAGTTGCAGCGCGTGATGGAGAGGTTGCCTTGCAGAGATGTCCAGGCGAGCATGCTGCTGGCATTGATGGGAGAGCCAGAGCAATGCAGCTACCCTTCCATTTTCATTTATGGTCATCGTGCCACAGGAAAAAGCCATGTCATACACACCTTGCTGAAGGAACTGGAGCTTCCCTATGCCACAGTGAGCTGTGTGGAATGTGTCTCTGTAGGACTGCTGTTTGAGCaggttctcctctccctctttggCTCCGACTCTGCCTCCCTACTGTCCCGCagtccctccctgtcagacttcGTACGAGTCTACAAACAACTGTGTGTCCAGGCCTCGGCCAAGCAGACACGATACATTGTGCTGGACCGGGCTGAGCTCCTTAGAGATATGGAAGCCAATCTCCTCCCTGCCTTCTTGCGCCTTCAGGAACTGGTCGAGGACAATGTGACGGTGATCCTGCTCAGTGAGATCGTGTGGGATAAGTTCCGACCCAACACTGGCTGTTTTGAACCACTACTGCTCCACTTCCCTGACTACAGTAAAGGGGAGCTGCAGCAGATCCTGTCTGAGGACAGCCACCCATCCTACTCCCCAGAGCTCTACTCTGCCTTCATCAACATCCTACTGGGAGTCTTCTACTCTGTCTGCAGGGACCTCCGAGAGCTCAGACACCTGGCTGCCCTCCATTTCTCTAAATTCGTTGAACCTTTGGAGCAAGGCAAAGTGAAAGAGAGTGACACTCACAAGCTGTGGAGGAACATCGAGCCTCACCTGAAGAAGGCCATGCAGACGGTGTACCTGCGAGAGGTGTCCAGTGTGCAGTGGGAGCAACAGTTGcagatggaggagaaggaggcaGGAGTTGTGAGAGGTCTGTCTGCTCATGCCCATGTGGAGTTGCCTTACTACTCCAAGTTCCTGCTGATAGCTGCATACCTGGCCTCCTACAACCCTGCTCGCACTGACAAACGCTTCTTCCTCAAGCACCATGGCAAAATAAAAAAGACCAACTTTTTGAAGAAACATGAAAAGACCAGTAATCACCTGCTGGGGCCCAAGCCGTTCCCTCTGGACCGTCTCCTGGCCATCTTCTACAGTGTGGTGGACAGCAGAGTGGCCCCCACCGCCAGTGTTTTCTGTCAGATCTCCTCCTTGGTGACCCTTCAGCTGTTGAATCAGGTGGGCCACGATGACCAGCTGGATGCGCCTAAATACAAATGTGCTGTCTCTCTGGACTTCATCCTCACCATCTCCAGGACTGTGAGCTTTGACATGGTAAAGTACCTGTATGACTTTCTCTAGCCGTGGTGGTTTAAGGGAGAGGAATTCATCTGGACTCTGATGGAATGGAATGTACTGGTGAACATTGGACAAACATGAGCAGAAAGGTGGGAGATGCTTCTCTTGTCTGGactcctcactgtgtgtgcactgtgcaggACCAGAGGACTATGGAATCATTAAGCCTATGCTTTATTGCCCCCTGGTGACTGACTGGAACCACTGTCAGACACCAgcatctgcagcattgtgactGTACTGTATTGTGAATGTGCCTATTGATTCCCTAGCTACACCTGTTTGATTGTGGTGAACAAACAATAGAGAACATTCATAATTTTCTGGATTCACAGGAGCCCTTGGATATCTTTGGGTTTTGGTGGACTTTAATATTATTTTTCAGTACTTCAAAATAAAATGTCCCTGTTAACAAAGGTTTCATAATTGTGACAGGATTCTGTTCTCTCCATAGTCTGACATCTACAGCTACGCACAATAAGAACCTGGTAGAATGAAGGATTCATCAAAGACTTCTTAAGGTACAAAATGGAGGGAAtataataaactcagcaacaaaaaaagtccccttttcaggaccctgtctttcaaagataatttgtaacaatccaaataacttcacagatcttcattgtaaagggtttaagtAAAGGGTTAGTGTCTTAAGACACTAACATCTTAGACGgtaagcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctg

Function

symbol description
orc5 Predicted to enable DNA replication origin binding activity. Predicted to be involved in DNA replication initiation. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Orthologous to human ORC5 (origin recognition complex subunit 5).

NR:

description
origin recognition complex subunit 5-like

GO: NA

KEGG:

id description
K02607 ORC5; origin recognition complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577084.2 True 2284 mRNA 0.48 14 21535960 21546505

Neighbor

gene id symbol gene type direction distance location
LOC110499987 LOC106609484 coding upstream 44355 21488422 ~ 21491605 (+)
LOC110501025 LOC106576014 coding upstream 50240 21455845 ~ 21485720 (+)
LOC110499986 LOC106576355 coding upstream 87071 21425570 ~ 21448889 (+)
LOC110499985 LOC106609397 coding upstream 125125 21357023 ~ 21410835 (+)
LOC110499983 magi2 coding upstream 185408 21087354 ~ 21350552 (+)
LOC110499994 LOC106609404 coding downstream 12036 21558541 ~ 21582813 (+)
LOC110499995 hcls1 coding downstream 36427 21582932 ~ 21591673 (+)
LOC110499997 LOC106576329 coding downstream 104149 21650654 ~ 21869745 (+)
LOC118942910 NA coding downstream 304441 21850946 ~ 21855948 (+)
LOC110499998 LOC106576327 coding downstream 374012 21920517 ~ 21948205 (+)
G1715904 NA non-coding upstream 83579 21451120 ~ 21452381 (+)
G1716078 NA non-coding upstream 112106 21420507 ~ 21423854 (+)
G1716061 NA non-coding upstream 219323 21316403 ~ 21316637 (+)
G1715966 NA non-coding upstream 368600 21166911 ~ 21167360 (+)
G1715945 NA non-coding upstream 396907 21138651 ~ 21139053 (+)
G1715907 NA non-coding downstream 4036 21550541 ~ 21553761 (+)
G1716118 NA non-coding downstream 7759 21554264 ~ 21554515 (+)
G1715905 cl031 non-coding downstream 45183 21591688 ~ 21593104 (+)
G1716125 NA non-coding downstream 50391 21596896 ~ 21597103 (+)
G1716154 NA non-coding downstream 99123 21645628 ~ 21645860 (+)
LOC110499980 LOC106576426 other upstream 535823 20954576 ~ 21004439 (+)
G1715392 NA other upstream 977209 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1422069 20109125 ~ 20113891 (+)
G1714090 NA other upstream 1912046 19384972 ~ 19754609 (+)
G1713384 NA other upstream 2798524 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 629458 22175963 ~ 22180897 (+)
G1717516 NA other downstream 1172414 22718919 ~ 22784445 (+)
G1717520 NA other downstream 1274247 22820752 ~ 22879923 (+)
G1717517 NA other downstream 1303387 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1468301 23014617 ~ 23032420 (+)

Expression


Co-expression Network