LOC110499995 (hcls1)


Basic Information

Item Value
gene id LOC110499995
gene name hcls1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21582932 ~ 21591673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577088.2
TAGCTACTTGCATGTCATCGGCCACGCGCATTATTTCCTACATCAACTGTTTGCGCGACTCTATCCTCGTTCTGGTTGAGACTTGTGAAAATATACATTTGTGGCATTATTACATCAAGGAAAGTTGTCTGGCAACGCAAAGATGTGGAAGTCAGTGGTGGGACACAACGTGAGCTTAAAGGTTGCAGAGGGGGACGACTGGGAGACCGACCCTGACTTTGAGAATGATGTGTCAGAACAGGAACAGAGATGGGGGGCCAAGACCATTGAGGGGTCTGGTCGAAAAGAACACATCAGTGTATCAGAGCTGAGACAGAAGGTGTCCCAGGAGCATGAGGTGGGAAAGCAGAAGGAGCGAGCGGAGGCTCCCAAGGCCTCTTATGGTTACGGGGGGAAGTTTGGAGTGGAGAAAGACCGCATGGACAAGGGGGCAGTGGGGCATGGCTACGTGGCGCAGGTGGAGCAGCACTCATCCCAGACCGATGCAAAGAGAGGATTCGGGGGGAAATTTGGAGTGCAGAAAGACCGTGTGGATAAGtctGCCATGGGTTTTGAATACAAGGGTGAGGTGGAGCAGCATACATCTCAGAAAGACTATTCAAAGGGTTTTGGAGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCCTTGGGATACGACTACAAGGGAGAGACCGAGAAGCACCAGTCTCAGAAAGACTATTCCAAGGGTTTTGGGGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCTTTAGGTTATGACTacaagggagagacagagaagcatGAGTCACAGAAAGACTATGCCAAGGGCTTTGGGGGACGCCATGGCGTCCAGACAGACCGCATGGATAAAAGTGCAGTGGCCTTCACAGACATGGAATCCCCTACCTCTGCCTATGAGAAGACAATACCATTGGAGGCATCAAGTGCAGGGGCAGGCAACCTGAAGGCTCGCTTTGAGAACCTGGCTCGGTCATCAGACGAGGAGAACAGAAAGCGAGCGGAGGAGGAGAGAGCCAGGAGACAggctagagagaagagagagcaggaggaggcaCAACGCATACAACAGGAACAGAACAGCAGGGAGGAGGAAGCAGAGCAGCATCAGCCTCCACCTGTTGAAGAACATCAGCCTCCACCTGTTGAAGAGCAGAGACCTCCACCTGTTCCAGAGACCAACAGGAAGCCCCAACCACCACAGCTGCCCACTGCCAGGGCAGTGCCTCAGATACCAAGAGATGAACCTGAGCTAGTGgaggaagaggaggagccagACTATGACCAGCCCCCGTGCCTGCCCCCACGGTCAAGTGACCTGCTGGAGGCGGAGCCACCTCAGGAGCAGACCCCATCAGAACCAGagcaggaggatgagggagagtaTGAGGATATCTCACCAATACCTTTCTTCCCAGAACCTGTTCCAGCTGTGGATAATGACTATGAGGACCTGACATGCGGTCAGACCGCAGTGGCCATTTATGACTACCAGGGAGAGGCAGATGATGAGATCTCCTTCAACCCGGATGATGTCATCACCAACATAGAGATGGTGGATGAAGGCTGGTGGAAGGGACACTGTCACGGACGCATTGGACTTTTCCCTGCTACATTCGTGAAAATGATGTAGTGAGCGTGCCTATACAGTCTCCAACACAGACATATACCTGAGCCCATAGGACCTGTATTTCTTTTCACAGGGGGGACATCAGCATATTGATCCTATCGGACAGGTATAGTTTGATTGTACCATGGGAgcatctcaattgcatactcctctaTCCTCACTTTCTTAATACCCATtggaggtcagaggggagggacctctggctttctcatccaatgggttttgaggtgAGGATGCAAGGAGTATACAATTCAGATTCTCCCCATGTGTTTTCTAGTCAATTGATTTAATTGAATTGGTCAGTAGTCATGATATATAATGGATAGTCATTGTGCTTCATTACTGCTCAGGGTGGGATGCAGCCGTTCCCCTTATAAACGCTGATTGCATTGCAACACTTGCATTTCAAAGGATTATGTAAGTCATTTAGCTATGGAATGTTTTGTTTAAAAACAATAATGATTAACTACAGAGAATTGTATTTTGGCTATTGATGGAATCCTTAACTTGAATTACATTGAAAAGCATAATATCAAACACCAGGTTAAAGGTCATTTCTAGAATCAACTGCATGTAATCAATAAACTGTATTCATGTACAGAAA
>XM_036957267.1
TTCAACTTATTTAAAATGCCAAAAGCATGTCCCTCAAATGTACAACCTTTAGATATATCCGCAATTACCAGACTTTGAATGTGTAACTGACTGCAATCTGTGTGGTACAATCAGGTAGCTGCCCTACATTAAATTGACATCAGTCTGGACAGCTGTGCCCAGCTGTAAGATACCCACCACTTCCATCAGATGTGGAAGTCAGTGGTGGGACACAACGTGAGCTTAAAGGTTGCAGAGGGGGACGACTGGGAGACCGACCCTGACTTTGAGAATGATGTGTCAGAACAGGAACAGAGATGGGGGGCCAAGACCATTGAGGGGTCTGGTCGAAAAGAACACATCAGTGTATCAGAGCTGAGACAGAAGGTGTCCCAGGAGCATGAGGTGGGAAAGCAGAAGGAGCGAGCGGAGGCTCCCAAGGCCTCTTATGGTTACGGGGGGAAGTTTGGAGTGGAGAAAGACCGCATGGACAAGGGGGCAGTGGGGCATGGCTACGTGGCGCAGGTGGAGCAGCACTCATCCCAGACCGATGCAAAGAGAGGATTCGGGGGGAAATTTGGAGTGCAGAAAGACCGTGTGGATAAGtctGCCATGGGTTTTGAATACAAGGGTGAGGTGGAGCAGCATACATCTCAGAAAGACTATTCAAAGGGTTTTGGAGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCCTTGGGATACGACTACAAGGGAGAGACCGAGAAGCACCAGTCTCAGAAAGACTATTCCAAGGGTTTTGGGGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCTTTAGGTTATGACTacaagggagagacagagaagcatGAGTCACAGAAAGACTATGCCAAGGGCTTTGGGGGACGCCATGGCGTCCAGACAGACCGCATGGATAAAAGTGCAGTGGCCTTCACAGACATGGAATCCCCTACCTCTGCCTATGAGAAGACAATACCATTGGAGGCATCAAGTGCAGGGGCAGGCAACCTGAAGGCTCGCTTTGAGAACCTGGCTCGGTCATCAGACGAGGAGAACAGAAAGCGAGCGGAGGAGGAGAGAGCCAGGAGACAggctagagagaagagagagcaggaggaggcaCAACGCATACAACAGGAACAGAACAGCAGGGAGGAGGAAGCAGAGCAGCATCAGCCTCCACCTGTTGAAGAACATCAGCCTCCACCTGTTGAAGAGCAGAGACCTCCACCTGTTCCAGAGACCAACAGGAAGCCCCAACCACCACAGCTGCCCACTGCCAGGGCAGTGCCTCAGATACCAAGAGATGAACCTGAGCTAGTGgaggaagaggaggagccagACTATGACCAGCCCCCGTGCCTGCCCCCACGGTCAAGTGACCTGCTGGAGGCGGAGCCACCTCAGGAGCAGACCCCATCAGAACCAGagcaggaggatgagggagagtaTGAGGATATCTCACCAATACCTTTCTTCCCAGAACCTGTTCCAGCTGTGGATAATGACTATGAGGACCTGACATGCGGTCAGACCGCAGTGGCCATTTATGACTACCAGGGAGAGGCAGATGATGAGATCTCCTTCAACCCGGATGATGTCATCACCAACATAGAGATGGTGGATGAAGGCTGGTGGAAGGGACACTGTCACGGACGCATTGGACTTTTCCCTGCTACATTCGTGAAAATGATGTAGTGAGCGTGCCTATACAGTCTCCAACACAGACATATACCTGAGCCCATAGGACCTGTATTTCTTTTCACAGGGGGGACATCAGCATATTGATCCTATCGGACAGGTATAGTTTGATTGTACCATGGGAgcatctcaattgcatactcctctaTCCTCACTTTCTTAATACCCATtggaggtcagaggggagggacctctggctttctcatccaatgggttttgaggtgAGGATGCAAGGAGTATACAATTCAGATTCTCCCCATGTGTTTTCTAGTCAATTGATTTAATTGAATTGGTCAGTAGTCATGATATATAATGGATAGTCATTGTGCTTCATTACTGCTCAGGGTGGGATGCAGCCGTTCCCCTTATAAACGCTGATTGCATTGCAACACTTGCATTTCAAAGGATTATGTAAGTCATTTAGCTATGGAATGTTTTGTTTAAAAACAATAATGATTAACTACAGAGAATTGTATTTTGGCTATTGATGGAATCCTTAACTTGAATTACATTGAAAAGCATAATATCAAACACCAGGTTAAAGGTCATTTCTAGAATCAACTGCATGTAATCAATAAACTGTATTCATGTACAGAAA
>XM_036957266.1
GTGACCTCAGCAGAATGAGGCTATATACTTGTGGTCAGCTGTCAGTTTTTCCACTGACAAAGAGGAAATGTTGAATGCCTTGAAGCTTATTTGTATTTGCAGGAACAGGTGATTGTTCACAAGATGTGGAAGTCAGTGGTGGGACACAACGTGAGCTTAAAGGTTGCAGAGGGGGACGACTGGGAGACCGACCCTGACTTTGAGAATGATGTGTCAGAACAGGAACAGAGATGGGGGGCCAAGACCATTGAGGGGTCTGGTCGAAAAGAACACATCAGTGTATCAGAGCTGAGACAGAAGGTGTCCCAGGAGCATGAGGTGGGAAAGCAGAAGGAGCGAGCGGAGGCTCCCAAGGCCTCTTATGGTTACGGGGGGAAGTTTGGAGTGGAGAAAGACCGCATGGACAAGGGGGCAGTGGGGCATGGCTACGTGGCGCAGGTGGAGCAGCACTCATCCCAGACCGATGCAAAGAGAGGATTCGGGGGGAAATTTGGAGTGCAGAAAGACCGTGTGGATAAGtctGCCATGGGTTTTGAATACAAGGGTGAGGTGGAGCAGCATACATCTCAGAAAGACTATTCAAAGGGTTTTGGAGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCCTTGGGATACGACTACAAGGGAGAGACCGAGAAGCACCAGTCTCAGAAAGACTATTCCAAGGGTTTTGGGGGGAAGTTTGGGGTGGAGAAGGAGAAAGTGGACAAGGCTGCTTTAGGTTATGACTacaagggagagacagagaagcatGAGTCACAGAAAGACTATGCCAAGGGCTTTGGGGGACGCCATGGCGTCCAGACAGACCGCATGGATAAAAGTGCAGTGGCCTTCACAGACATGGAATCCCCTACCTCTGCCTATGAGAAGACAATACCATTGGAGGCATCAAGTGCAGGGGCAGGCAACCTGAAGGCTCGCTTTGAGAACCTGGCTCGGTCATCAGACGAGGAGAACAGAAAGCGAGCGGAGGAGGAGAGAGCCAGGAGACAggctagagagaagagagagcaggaggaggcaCAACGCATACAACAGGAACAGAACAGCAGGGAGGAGGAAGCAGAGCAGCATCAGCCTCCACCTGTTGAAGAACATCAGCCTCCACCTGTTGAAGAGCAGAGACCTCCACCTGTTCCAGAGACCAACAGGAAGCCCCAACCACCACAGCTGCCCACTGCCAGGGCAGTGCCTCAGATACCAAGAGATGAACCTGAGCTAGTGgaggaagaggaggagccagACTATGACCAGCCCCCGTGCCTGCCCCCACGGTCAAGTGACCTGCTGGAGGCGGAGCCACCTCAGGAGCAGACCCCATCAGAACCAGagcaggaggatgagggagagtaTGAGGATATCTCACCAATACCTTTCTTCCCAGAACCTGTTCCAGCTGTGGATAATGACTATGAGGACCTGACATGCGGTCAGACCGCAGTGGCCATTTATGACTACCAGGGAGAGGCAGATGATGAGATCTCCTTCAACCCGGATGATGTCATCACCAACATAGAGATGGTGGATGAAGGCTGGTGGAAGGGACACTGTCACGGACGCATTGGACTTTTCCCTGCTACATTCGTGAAAATGATGTAGTGAGCGTGCCTATACAGTCTCCAACACAGACATATACCTGAGCCCATAGGACCTGTATTTCTTTTCACAGGGGGGACATCAGCATATTGATCCTATCGGACAGGTATAGTTTGATTGTACCATGGGAgcatctcaattgcatactcctctaTCCTCACTTTCTTAATACCCATtggaggtcagaggggagggacctctggctttctcatccaatgggttttgaggtgAGGATGCAAGGAGTATACAATTCAGATTCTCCCCATGTGTTTTCTAGTCAATTGATTTAATTGAATTGGTCAGTAGTCATGATATATAATGGATAGTCATTGTGCTTCATTACTGCTCAGGGTGGGATGCAGCCGTTCCCCTTATAAACGCTGATTGCATTGCAACACTTGCATTTCAAAGGATTATGTAAGTCATTTAGCTATGGAATGTTTTGTTTAAAAACAATAATGATTAACTACAGAGAATTGTATTTTGGCTATTGATGGAATCCTTAACTTGAATTACATTGAAAAGCATAATATCAAACACCAGGTTAAAGGTCATTTCTAGAATCAACTGCATGTAATCAATAAACTGTATTCATGTACAGAAA

Function

symbol description
hcls1 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to act upstream of or within actin filament polymerization. Predicted to be active in cortical actin cytoskeleton; plasma membrane; and site of polarized growth. Predicted to colocalize with actin filament. Orthologous to human HCLS1 (hematopoietic cell-specific Lyn substrate 1).

NR:

description
hematopoietic lineage cell-specific protein-like isoform X1

GO:

id name namespace
GO:0030041 actin filament polymerization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K06106 CTTN, EMS1; cortactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577088.2 False 2252 mRNA 0.49 15 21582932 21591673
XM_036957267.1 False 2299 mRNA 0.49 15 21583426 21591673
XM_036957266.1 True 2233 mRNA 0.49 15 21583720 21591673

Neighbor

gene id symbol gene type direction distance location
LOC110499994 LOC106609404 coding upstream 119 21558541 ~ 21582813 (+)
LOC110499992 orc5 coding upstream 36427 21535960 ~ 21546505 (+)
LOC110499987 LOC106609484 coding upstream 91327 21488422 ~ 21491605 (+)
LOC110501025 LOC106576014 coding upstream 97212 21455845 ~ 21485720 (+)
LOC110499986 LOC106576355 coding upstream 134043 21425570 ~ 21448889 (+)
LOC110499997 LOC106576329 coding downstream 58981 21650654 ~ 21869745 (+)
LOC118942910 NA coding downstream 259273 21850946 ~ 21855948 (+)
LOC110499998 LOC106576327 coding downstream 328844 21920517 ~ 21948205 (+)
LOC100653451 LOC106609409 coding downstream 399545 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 418293 22009966 ~ 22011099 (+)
G1716118 NA non-coding upstream 28417 21554264 ~ 21554515 (+)
G1715907 NA non-coding upstream 29171 21550541 ~ 21553761 (+)
G1715904 NA non-coding upstream 130551 21451120 ~ 21452381 (+)
G1716078 NA non-coding upstream 159078 21420507 ~ 21423854 (+)
G1716061 NA non-coding upstream 266295 21316403 ~ 21316637 (+)
G1715905 cl031 non-coding downstream 15 21591688 ~ 21593104 (+)
G1716125 NA non-coding downstream 5223 21596896 ~ 21597103 (+)
G1716154 NA non-coding downstream 53955 21645628 ~ 21645860 (+)
G1716267 NA non-coding downstream 244527 21836200 ~ 21839060 (+)
G1716270 NA non-coding downstream 249608 21841281 ~ 21843712 (+)
LOC110499980 LOC106576426 other upstream 582795 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1024181 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1469041 20109125 ~ 20113891 (+)
G1714090 NA other upstream 1959018 19384972 ~ 19754609 (+)
G1713384 NA other upstream 2845496 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 584290 22175963 ~ 22180897 (+)
G1717516 NA other downstream 1127246 22718919 ~ 22784445 (+)
G1717520 NA other downstream 1229079 22820752 ~ 22879923 (+)
G1717517 NA other downstream 1258219 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1423133 23014617 ~ 23032420 (+)

Expression


Co-expression Network