LOC118942910


Basic Information

Item Value
gene id LOC118942910
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21850946 ~ 21855948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957278.1
acgcgcacacacacacccatgcatgTAACTGCCGTCAGTGTTAGCTTAGCATATAGCGCTGCCTCCCTGAACCTGCCTCTGACTGGGCTTTAACCAGGCTCCTCTACCACACCAACACACGTGACCGCCTGCTTGACAACAAAGACATTGAGCCATAGAAAAAGCATCCTATTCGATAGCTCCACCGGTGACATTTTGAGTGAGCTTACTTGTTCTTAACTCCGatatgcatgcatacacacacagacggtATAGTCTTCAAGGGTAAAGACACTCAAGAAGCTATTTCTGCTAGTTTGCATTGTACCGCCTTCACAGTCAGAGAACCTGACTTGTGTAGCATCTCTATCCTTGGTGTTGGTAACTGAATGTTGGAGAGAATGGGAGGAACCCGTTTAAGGCCGGCTTGTTTATCTCTCAGTAGTGTCAGTCAGCTCATGCACTTAATTCAGCTCTGCAGCATTTACTCTAATTTACCACACCAACAGCTATTTTATACCTCAGTCTGTTTCACAGCTCCGAGTTGTCATGGTGATTTTATGTAACCTCTGAGGAACCTGCTGAGCTTAATGCTATAAACTGTTTTATTCTATGTAgctttatcacacacacacacacacacacacacacacacttaaactgAATCTTTCATCAAGGAGCAGTGAACTCTGGGAATATGACTCTATAGACCCCCTCTGCCCTGGTTCCCCCTGCTGTGACTGGTGGTCAGTTCCCTGCCCCTCTTAACCAAATGACCCCTTTAAGTTTACACTCCGGGTTAATCAACCCTGTAAATGCAGGGGTAGTGTCTGACAAGCAGAACACTGACGGGGGAAAGGTGGGGTAGGGAGCTAACTTCTTTATTTGACCAGTCACAGGACTGGTTATTCTGCTGCCTTTAAGCTCACAGACAGTGACGTCTGATTCACCCTATGGGGCCGACCCGAACCGTACTGTGCTGCCCAGTACAGCTGGGCTTGGCTCGGCTCTATAGTGTGAAACAGGCATGCGTGAGCAGCCCTTTAGTACGGTGTCTTTAATAGAGATTGTCATCCCCTCAAGTGTTCTTATCTAGGTCATGACAGCTTGATCCAGTGGGGCTGCAAAGCACAGTGATCATGGCTGCTAAAATTAGAATCAACAACAGATTAGAATGGGTTGGAATGGGGTTTAACGGTGTGGTACACTGAGGTATATCAAACTAGACTGAATCTGTTAGAAAGGGGTTTAATAGTGTGGTACACTGAGGTATATCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACCGAATCTGTTAGAAAGGGGTTTAACGGTGTGGTACACTGAGGTATATCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATCTCAAACTATACAGAATCTGTTAGAAAGGGGTTTAACGGTGTGGTACACTGAGGTATCTCAAACTAGACAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTATTAGAAAGGGGTTTAATGGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATCTCAAACTAGACTGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTATACAGAATCTGTTAGAAAGGGGTTTAACAGTGGGGTACACTGAGGTATCTCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAATAGTGTGGTACACTGAGGTATATCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAATAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAATAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAATGGTGTGGTACACTGAGGTATCTCAAACGAGACTAAATCTGTTAGAAAGGGGTTTAATGGTGGGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTATACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACGGTGTGGTACACTGAGGTATCTCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATCTCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATCTCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGATATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAATGGTGGGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAATGGTGTGGTACACTGAGATATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAATGGTGGGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAATGGTGTGGTACACTGAGATATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAATGGTGTGGTACACTGAGGTATATCAAACTAGACTATTAGAAAGGGGTTTAATAGTGTGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATCTCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTATACAGAATCTGTTAGAAAGGGGTTTAACAGTGGGGTACACTGAGGTATATCAAACTAGACAGAATCTGTTAGAAAGGGGTTTAACGGTGTGGTACACTGAGGTATCTCAAACTAGACTAAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACATAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAATCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGCCTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGTCTGTTAGAAAGGGGTTTAACAGTGTGGTACACTGAGGTATATCAAACTAGACTGAGGTGGATATGCAtgtttgtatttgtgtctgtTTGCTCCAAACCCTTGTACTAATCCACTACTACACTAGCTTATGGTGAACCAGTCTTGTCATGCATGGTAAATGTGTTCCTTTGGCTCGTATGTGTTGCACCTGTGTAGGTGGGCTGCTCCTGTCTTATGTGCTGTTTTTGTCTATCCAAAGTCAGAAGTTGCCCTAACCACTGATACAGGATCAGATAGTATTTCACCCCTTTAATGGATAAGGTTATGATGGGGACAGagtatctgatcctagatctgtggttaaggaCATCTTCTACCTCAATCAgttttgtgtctgtgtttgtttgtgtactgTGCATGCCCTTTGACCCCAGAGGGGCGGGCCTGCTCATCATCTGACCATGATGCTATAACACTATTGGCTTACAGTGGTGCTGCTCTTCTTCTTTAATACTGCTTGCCCCTCCTGGcggactactgct

Function

NR:

description
PREDICTED: adhesive plaque matrix protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957278.1 True 4783 mRNA 0.42 2 21850946 21855948

Neighbor

gene id symbol gene type direction distance location
LOC110499995 hcls1 coding upstream 259273 21582932 ~ 21591673 (+)
LOC110499994 LOC106609404 coding upstream 268133 21558541 ~ 21582813 (+)
LOC110499992 orc5 coding upstream 304441 21535960 ~ 21546505 (+)
LOC110499987 LOC106609484 coding upstream 359341 21488422 ~ 21491605 (+)
LOC110501025 LOC106576014 coding upstream 365226 21455845 ~ 21485720 (+)
LOC110499998 LOC106576327 coding downstream 64569 21920517 ~ 21948205 (+)
LOC100653451 LOC106609409 coding downstream 135270 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 154018 22009966 ~ 22011099 (+)
LOC110501027 LOC106609383 coding downstream 262033 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 285744 22141692 ~ 22175639 (+)
G1716270 NA non-coding upstream 7234 21841281 ~ 21843712 (+)
G1716267 NA non-coding upstream 11886 21836200 ~ 21839060 (+)
G1716154 NA non-coding upstream 205086 21645628 ~ 21645860 (+)
G1716125 NA non-coding upstream 253843 21596896 ~ 21597103 (+)
G1715905 cl031 non-coding upstream 257842 21591688 ~ 21593104 (+)
LOC110499997 LOC106576329 non-coding downstream 11059 21650654 ~ 21869745 (+)
G1716881 NA non-coding downstream 16172 21872120 ~ 21872339 (+)
G1716883 NA non-coding downstream 20356 21876304 ~ 21876625 (+)
G1716885 NA non-coding downstream 21926 21877874 ~ 21878169 (+)
G1716888 NA non-coding downstream 24042 21879990 ~ 21880232 (+)
LOC110499980 LOC106576426 other upstream 850809 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1292195 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1737055 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2227032 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3113510 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 320015 22175963 ~ 22180897 (+)
G1717516 NA other downstream 862971 22718919 ~ 22784445 (+)
G1717520 NA other downstream 964804 22820752 ~ 22879923 (+)
G1717517 NA other downstream 993944 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1158858 23014617 ~ 23032420 (+)

Expression


Co-expression Network