LOC110499998 (LOC106576327)


Basic Information

Item Value
gene id LOC110499998
gene name LOC106576327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21920517 ~ 21948205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577094.2
CCACCGACGGGCTCTGTGCTCTCACTCGCCCGTTTAGCTTGAGTTGCTTCTGATGCTGCAGCTACCGTAGTCGCTATATCTCCCCATAACAGCAGTCATGGCGACAGAGGTCCAACCGCTCACTCTGGATCGAGatgtGGCCAGAGCGATTGAGCTGCTGGAGAAGCTACAGGAGTCCGGGGACGTCCCGGGTCACAAGCTGCAGTCCCTGAAGTTGGTGTTGCAGAGTGAGTTCTGCACAGCCATTAGAGAGgccaCAGTTGCAGCCTTTGCGGCCAGCGAGGGTCACTCTCACCCCCGAGTGGTAGAGCTGCCCAAGACGGAGGAGGGGCTGGGCTTCAACGTGATGGGCGGCAAGGAGCAGAACTCTCCCATCTATATCTCCCGCATCATCCCAGGGGGCTTGGCTGAGAGGCACGGGGGCCTGAAGCGAGGGGACCAGCTCCTGTCTGTCAATGGTGTGAGTGTGGAGGGGGAGCACCACGAGAAGGCAGTGGAGCTTCTGAAGGCAGCCAAGGACAGTGTGAAGCTGGTGGTACGCTACACGCCCAAGgtcctggaggagatggaggCGCGCTTCGAGAAGCTCCGCACGGCCCGCCGCcgccagcagcagcagctcctCATGCAGGCCCAGCAGCAGCAGAACCTCACTACCCAGCAGAACCATATGTCGCTGTTCCAAAAGAAGAAGTAGTGAAGGACACTGAAAGCAAGGTTCTAAGTCCATATCTGTGTGGAGGATCCCGAAGGAACCACCTGGTAGAGGAGAATATGATACTGTTAAGCAGTGAAGACTCTCCCTCGCCCTTCAATGTACTACCAACAGAAGGAAGCAAAACTGAATGATATGTGTTCTGAAATGTAAACAACGGTGCTTGTGACTTGAGACATTGGAGGCAAGCACTGAAACCCATCCTTTTGACTTTTATTTTGTTTGTGTTCATTTGAAGTTGTCCTCTAACAGTTGAAAGTTGTGACCCTCCTCAATGTTCCTCCTTGTCATTTGTGATAGTTTATTTTTGTTATCTGTTTTGAATTCATTTCACTTGTTTCCTGACTTTGGTTTTGCTATAGCTTTGTACAGTGATATTGTTTCTTCTATGGgagcttgtgtctgtgtgtgaatgaACATTGCTTTTTTTGTGTCAAACTTGTCCTGCTTTGGATAAATGTGAACTCTTTTTTTACCTTATATATTGCAGTGAGAAAATATTTTGTATGGAAACTTGTAGATTTTAGCAATAACAGACTTTCGTTGGTTTTACATTTCACATAAAAGTAACGATTAGAGATATATAGTATGTGGGAAAGATACAAAAGTGAACCATGTAAAACTCGGTCAACTGTATCTTATGCACTGTGTGTCATAAGGCAGCTTCTGCCATTAAAATCAAATGGCTGTTAAAAGAGGAAGAGACTGTGGAATGTTCTAGTCGTCTTATCAATAAGGGACCTCTGTTTTAAACTCTCTCCTTCAACCCTCTACCTATCGTCTGACGTAGTATTCTCATGACAATTAACCGTCTTTAAGTATAACAAGTTGCACTGTGGATTCATTCAAAGCTATTAGAAAACCAGTTGATGGTCAAGACTGATCAAAAGGAGTCTTGTATCTGTAGTACTGTCAGACAAACAATACATTGGATGGTTTTCCCAGTAGCAAACTCTAGTATGTATGTTCTATATAGGCCTAGTTCCTTTGTGGGTGGGTATTGAAGTAGTGCAAGATCATTTGACAGGCATACTGTGTGCAATGTGCCATCCTGATAGTCCAACCAGATTGGGCTTTGAACGTGTTTTGTCCCTCAACTTTTGAGCAGTTCATCTTGCCTCTGACAGATCCCTTTTGTACATTTACTTATTCTCTTTCTAATTGACGATTTTTTTAGGCTGGATGTACTGTACTTCCTGATTCGACGTACTGTACTTCCTGATTCGATCTACTGTACTTCCTGATTCGACGTACTGTACTCCCTGATTTGGCGTACTGTACTTCCTGATTGTACAGAAAAAAAAGACAACACCAGGTGATATGCAATTGTTATACATATTATATttgtataaataaatatatgtgcGTGTGTACAATGACAACTT
>XM_021577092.2
CACCGACGGGCTCTGTGCTCTCACTCGCCCGTTTAGCTTGAGTTGCTTCTGATGCTGCAGCTACCGTAGTCGCTATATCTCCCCATAACAGCAGTCATGGCGACAGAGGTCCAACCGCTCACTCTGGATCGAGatgtGGCCAGAGCGATTGAGCTGCTGGAGAAGCTACAGGAGTCCGGGGACGTCCCGGGTCACAAGCTGCAGTCCCTGAAGTTGGTGTTGCAGAGTGAGTTCTGCACAGCCATTAGAGAGgtgTACCAGTACATGCATGAAACAATCACAGTCAATGGCTGTCCGGAGTACCAGGCACGGGCTACAGCGAAGgccaCAGTTGCAGCCTTTGCGGCCAGCGAGGGTCACTCTCACCCCCGAGTGGTAGAGCTGCCCAAGACGGAGGAGGGGCTGGGCTTCAACGTGATGGGCGGCAAGGAGCAGAACTCTCCCATCTATATCTCCCGCATCATCCCAGGGGGCTTGGCTGAGAGGCACGGGGGCCTGAAGCGAGGGGACCAGCTCCTGTCTGTCAATGGTGTGAGTGTGGAGGGGGAGCACCACGAGAAGGCAGTGGAGCTTCTGAAGGCAGCCAAGGACAGTGTGAAGCTGGTGGTACGCTACACGCCCAAGgtcctggaggagatggaggCGCGCTTCGAGAAGCTCCGCACGGCCCGCCGCcgccagcagcagcagctcctCATGCAGGCCCAGCAGCAGCAGAACCTCACTACCCAGCAGAACCATATGTCGCTGTTCCAAAAGAAGAAGTAGTGAAGGACACTGAAAGCAAGGTTCTAAGTCCATATCTGTGTGGAGGATCCCGAAGGAACCACCTGGTAGAGGAGAATATGATACTGTTAAGCAGTGAAGACTCTCCCTCGCCCTTCAATGTACTACCAACAGAAGGAAGCAAAACTGAATGATATGTGTTCTGAAATGTAAACAACGGTGCTTGTGACTTGAGACATTGGAGGCAAGCACTGAAACCCATCCTTTTGACTTTTATTTTGTTTGTGTTCATTTGAAGTTGTCCTCTAACAGTTGAAAGTTGTGACCCTCCTCAATGTTCCTCCTTGTCATTTGTGATAGTTTATTTTTGTTATCTGTTTTGAATTCATTTCACTTGTTTCCTGACTTTGGTTTTGCTATAGCTTTGTACAGTGATATTGTTTCTTCTATGGgagcttgtgtctgtgtgtgaatgaACATTGCTTTTTTTGTGTCAAACTTGTCCTGCTTTGGATAAATGTGAACTCTTTTTTTACCTTATATATTGCAGTGAGAAAATATTTTGTATGGAAACTTGTAGATTTTAGCAATAACAGACTTTCGTTGGTTTTACATTTCACATAAAAGTAACGATTAGAGATATATAGTATGTGGGAAAGATACAAAAGTGAACCATGTAAAACTCGGTCAACTGTATCTTATGCACTGTGTGTCATAAGGCAGCTTCTGCCATTAAAATCAAATGGCTGTTAAAAGAGGAAGAGACTGTGGAATGTTCTAGTCGTCTTATCAATAAGGGACCTCTGTTTTAAACTCTCTCCTTCAACCCTCTACCTATCGTCTGACGTAGTATTCTCATGACAATTAACCGTCTTTAAGTATAACAAGTTGCACTGTGGATTCATTCAAAGCTATTAGAAAACCAGTTGATGGTCAAGACTGATCAAAAGGAGTCTTGTATCTGTAGTACTGTCAGACAAACAATACATTGGATGGTTTTCCCAGTAGCAAACTCTAGTATGTATGTTCTATATAGGCCTAGTTCCTTTGTGGGTGGGTATTGAAGTAGTGCAAGATCATTTGACAGGCATACTGTGTGCAATGTGCCATCCTGATAGTCCAACCAGATTGGGCTTTGAACGTGTTTTGTCCCTCAACTTTTGAGCAGTTCATCTTGCCTCTGACAGATCCCTTTTGTACATTTACTTATTCTCTTTCTAATTGACGATTTTTTTAGGCTGGATGTACTGTACTTCCTGATTCGACGTACTGTACTTCCTGATTCGATCTACTGTACTTCCTGATTCGACGTACTGTACTCCCTGATTTGGCGTACTGTACTTCCTGATTGTACAGAAAAAAAAGACAACACCAGGTGATATGCAATTGTTATACATATTATATttgtataaataaatatatgtgcGTGTGTACAATGACAACTT
>XM_021577093.2
CACCGACGGGCTCTGTGCTCTCACTCGCCCGTTTAGCTTGAGTTGCTTCTGATGCTGCAGCTACCGTAGTCGCTATATCTCCCCATAACAGCAGTCATGGCGACAGAGGTCCAACCGCTCACTCTGGATCGAGatgtGGCCAGAGCGATTGAGCTGCTGGAGAAGCTACAGGAGTCCGGGGACGTCCCGGGTCACAAGCTGCAGTCCCTGAAGTTGGTGTTGCAGAGTGAGTTCTGCACAGCCATTAGAGAGgtgTACCAGTACATGCATGAAACAATCACAGTCAATGGCTGTCCGGAGTACCAGGCACGGGCTACAGCGAAGgccaCAGTTGCAGCCTTTGCGGCCAGCGAGGGTCACTCTCACCCCCGAGTGGTAGAGCTGCCCAAGACGGAGGAGGGGCTGGGCTTCAACGTGATGGGCGGCAAGGAGCAGAACTCTCCCATCTATATCTCCCGCATCATCCCAGGGGGCTTGGCTGAGAGGCACGGGGGCCTGAAGCGAGGGGACCAGCTCCTGTCTGTCAATGGTGTGAGTGTGGAGGGGGAGCACCACGAGAAGGCAGTGGAGCTTCTGAAGGCAGCCAAGGACAGTGTGAAGCTGGTGGTACGCTACACGCCCAAGgtcctggaggagatggaggCGCGCTTCGAGAAGCTCCGCACGGCCCGCCGCcgccagcagcagcagctcctCATGCAGGCCCAGCAGCAGCAGAACCTCACTACCCAGCAGAACCATATGTCGTAGGCTGTTCCAAAAGAAGAAGTAGTGAAGGACACTGAAAGCAAGGTTCTAAGTCCATATCTGTGTGGAGGATCCCGAAGGAACCACCTGGTAGAGGAGAATATGATACTGTTAAGCAGTGAAGACTCTCCCTCGCCCTTCAATGTACTACCAACAGAAGGAAGCAAAACTGAATGATATGTGTTCTGAAATGTAAACAACGGTGCTTGTGACTTGAGACATTGGAGGCAAGCACTGAAACCCATCCTTTTGACTTTTATTTTGTTTGTGTTCATTTGAAGTTGTCCTCTAACAGTTGAAAGTTGTGACCCTCCTCAATGTTCCTCCTTGTCATTTGTGATAGTTTATTTTTGTTATCTGTTTTGAATTCATTTCACTTGTTTCCTGACTTTGGTTTTGCTATAGCTTTGTACAGTGATATTGTTTCTTCTATGGgagcttgtgtctgtgtgtgaatgaACATTGCTTTTTTTGTGTCAAACTTGTCCTGCTTTGGATAAATGTGAACTCTTTTTTTACCTTATATATTGCAGTGAGAAAATATTTTGTATGGAAACTTGTAGATTTTAGCAATAACAGACTTTCGTTGGTTTTACATTTCACATAAAAGTAACGATTAGAGATATATAGTATGTGGGAAAGATACAAAAGTGAACCATGTAAAACTCGGTCAACTGTATCTTATGCACTGTGTGTCATAAGGCAGCTTCTGCCATTAAAATCAAATGGCTGTTAAAAGAGGAAGAGACTGTGGAATGTTCTAGTCGTCTTATCAATAAGGGACCTCTGTTTTAAACTCTCTCCTTCAACCCTCTACCTATCGTCTGACGTAGTATTCTCATGACAATTAACCGTCTTTAAGTATAACAAGTTGCACTGTGGATTCATTCAAAGCTATTAGAAAACCAGTTGATGGTCAAGACTGATCAAAAGGAGTCTTGTATCTGTAGTACTGTCAGACAAACAATACATTGGATGGTTTTCCCAGTAGCAAACTCTAGTATGTATGTTCTATATAGGCCTAGTTCCTTTGTGGGTGGGTATTGAAGTAGTGCAAGATCATTTGACAGGCATACTGTGTGCAATGTGCCATCCTGATAGTCCAACCAGATTGGGCTTTGAACGTGTTTTGTCCCTCAACTTTTGAGCAGTTCATCTTGCCTCTGACAGATCCCTTTTGTACATTTACTTATTCTCTTTCTAATTGACGATTTTTTTAGGCTGGATGTACTGTACTTCCTGATTCGACGTACTGTACTTCCTGATTCGATCTACTGTACTTCCTGATTCGACGTACTGTACTCCCTGATTTGGCGTACTGTACTTCCTGATTGTACAGAAAAAAAAGACAACACCAGGTGATATGCAATTGTTATACATATTATATttgtataaataaatatatgtgcGTGTGTACAATGACAACTT

Function

NR:

description
PREDICTED: protein lin-7 homolog A isoform X1

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577094.2 False 2100 mRNA 0.45 5 21920517 21948205
XM_021577092.2 False 2171 mRNA 0.45 6 21920518 21948205
XM_021577093.2 True 2175 mRNA 0.45 6 21920518 21948205
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499997 LOC106576329 coding upstream 50772 21650654 ~ 21869745 (+)
LOC118942910 NA coding upstream 64569 21850946 ~ 21855948 (+)
LOC110499995 hcls1 coding upstream 328844 21582932 ~ 21591673 (+)
LOC110499994 LOC106609404 coding upstream 337704 21558541 ~ 21582813 (+)
LOC110499992 orc5 coding upstream 374012 21535960 ~ 21546505 (+)
LOC100653451 LOC106609409 coding downstream 43013 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 61761 22009966 ~ 22011099 (+)
LOC110501027 LOC106609383 coding downstream 169776 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 193487 22141692 ~ 22175639 (+)
LOC118943003 NA coding downstream 378522 22326727 ~ 22337006 (+)
G1716905 NA non-coding upstream 24409 21895878 ~ 21896108 (+)
G1716898 NA non-coding upstream 29703 21890518 ~ 21890814 (+)
G1716888 NA non-coding upstream 40285 21879990 ~ 21880232 (+)
G1716885 NA non-coding upstream 42348 21877874 ~ 21878169 (+)
G1716883 NA non-coding upstream 43892 21876304 ~ 21876625 (+)
G1716935 rps16 non-coding downstream 38055 21986260 ~ 21990776 (+)
G1716998 NA non-coding downstream 71122 22019327 ~ 22019604 (+)
G1717004 NA non-coding downstream 87292 22035497 ~ 22036125 (+)
G1717010 NA non-coding downstream 101030 22049235 ~ 22049439 (+)
G1717013 LOC106576321 non-coding downstream 105258 22053463 ~ 22054023 (+)
LOC110499980 LOC106576426 other upstream 920380 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1361766 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1806626 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2296603 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3183081 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 227758 22175963 ~ 22180897 (+)
G1717516 NA other downstream 770714 22718919 ~ 22784445 (+)
G1717520 NA other downstream 872547 22820752 ~ 22879923 (+)
G1717517 NA other downstream 901687 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1066601 23014617 ~ 23032420 (+)

Expression

LOC110499998(LOC106576327) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110499998(LOC106576327) Expression in each Bioproject

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LOC110499998(LOC106576327) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network