LOC110500917


Basic Information

Item Value
gene id LOC110500917
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22009966 ~ 22011099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957285.1
GCACAGGTTTGAGTGGCACCTGAGTGCATCTGTTGTGCGTCTGAAATAGGGCACTCCGATTGTCCTTGGAAAGGAATGATGGGGAGAGTCTGGGGTTAAGGAGAGGGGGCAGACTTGTTGAAGAAGAAAATGGACTCCATTCCATCTGTCTGAACATCTCGGCTAGACAGTGGGGTTTGGACACATATTCAGGATAAAGCTTTAAAAGAGCCCAAGCAGCCTGAAAGTTCACTTCACTTCCCCTCTTGACTGTTGGGACACAAgttggtctctgtgtgtgtgtgtctccgctGGTCTTTCTTACTTGACTTCTTGACTGTCTCAGAGGCAGGCTTAACATCATGTCTGACACAGAGGATATTGTGGAGGAAGAAGTAGAGGAGGCACCTGAGGTGGAAGAGGAGCCTGAAgaagagcagcaggaggaggataaggaagatgaggaggacgagatggaggagagggaacaTGGTGAGGGGAGCGAGGGGGAGACCAAGCCATGGACCAAGTACATTACCAACATCGCTCCTCCCAAGCTGCCCGACGGCGAGAAGTTAGACTTTGATGACCTCCACCGCAAGAGGCTGGAGAAGGACTTCAATGACCTGCAGAGCCTGATCGAGATGCACTTCTCCAGCTgccagaaagaggaggaggagttagtGGCCCTCCGCAGCCGCATCGAGCGCCGCCGTGCCGAGCAGCAGCGCGTGCGCGCCGAGCAGAACAATGAGCGCCAGGCCCGTCTTGCTGAGGAGCGGACCCGCCGGGAAGAGGAGGCCTTGACATGATCAGATTACCCTAGCTGTCTTTGGGCCGTTTTAGGTACATCCACCTGCTTCTGCTTTATCATATTTCCTGAGGATTGGGTATAGACCtgcttgtttttttgtttgcGGGTTTCTACAGTATACCGTTAGCTAAGCAGGTCTATAACTGATCAGCCTACATAATGTATTTACAGGTTTTGCACAGGCTGTAATTTTCTTTGGGGACTGTAGTTGTCGGATGTAAACATTTTAATATGGTTCACAAGGTATATGGTTCCTGATATCGTATTCACAGATCAAGCTAATTGTTTGAATGCTGTTAACACAGTTTTGATTTGATCATTCTAATAAAATGTGAATGTTG

Function

NR:

description
skeletal troponin T

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957285.1 True 1134 mRNA 0.49 1 22009966 22011099

Neighbor

gene id symbol gene type direction distance location
LOC100653451 LOC106609409 coding upstream 2159 21991218 ~ 22007807 (+)
LOC110499998 LOC106576327 coding upstream 61761 21920517 ~ 21948205 (+)
LOC110499997 LOC106576329 coding upstream 140221 21650654 ~ 21869745 (+)
LOC118942910 NA coding upstream 154018 21850946 ~ 21855948 (+)
LOC110499995 hcls1 coding upstream 418293 21582932 ~ 21591673 (+)
LOC110501027 LOC106609383 coding downstream 106882 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 130593 22141692 ~ 22175639 (+)
LOC118943003 NA coding downstream 315628 22326727 ~ 22337006 (+)
LOC110500014 LOC106576341 coding downstream 703027 22713864 ~ 22716877 (+)
LOC110500032 NA coding downstream 718092 22729191 ~ 22730990 (+)
G1716935 rps16 non-coding upstream 19190 21986260 ~ 21990776 (+)
G1716905 NA non-coding upstream 113858 21895878 ~ 21896108 (+)
G1716898 NA non-coding upstream 119152 21890518 ~ 21890814 (+)
G1716888 NA non-coding upstream 129734 21879990 ~ 21880232 (+)
G1716885 NA non-coding upstream 131797 21877874 ~ 21878169 (+)
G1716998 NA non-coding downstream 8228 22019327 ~ 22019604 (+)
G1717004 NA non-coding downstream 24398 22035497 ~ 22036125 (+)
G1717010 NA non-coding downstream 38136 22049235 ~ 22049439 (+)
G1717013 LOC106576321 non-coding downstream 42364 22053463 ~ 22054023 (+)
G1717015 NA non-coding downstream 44194 22055293 ~ 22055546 (+)
LOC110499980 LOC106576426 other upstream 1009829 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1451215 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1896075 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2386052 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3272530 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 164864 22175963 ~ 22180897 (+)
G1717516 NA other downstream 707820 22718919 ~ 22784445 (+)
G1717520 NA other downstream 809653 22820752 ~ 22879923 (+)
G1717517 NA other downstream 838793 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1003707 23014617 ~ 23032420 (+)

Expression


Co-expression Network