LOC118943003


Basic Information

Item Value
gene id LOC118943003
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22326727 ~ 22337006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958468.1
ATGGTTGTCAGCCTCTCCAAGCAGCTGAGAGCTGAGAGCAAGATGACATCCACCAGCAGATTGATGACTCTCAGCCTGCCTCCCCACTCATCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACGCCCCAGGCATGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCTACGCCCCAGGCATGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCTACGCCCCAGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCTACTCCTCAGGCCTGCCTCCCCACTCCTCTGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCCCAGACCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAAGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCTCAGGCCTTCCTCCCCACTCCCCAGGCCTGCCTCCCCACTCCACAGGCCTGCCTCCCCACTCCTCACGCCTGCCTCCCCACTCCTCAGGCCTGCCTCCCCACTCCTCAGGCCTGCTTCCCCACTCCCCAGGCCTGCCTCCCCACTCCCCAGGCCTGCCTCTCCACTTGCAGACAGAAGGCATTTAGAAGTCAATACTGCCTAAATGTAACAAGCAGCAGTTAG

Function

NR:

description
Ligand-dependent nuclear receptor corepressor-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958468.1 True 1419 mRNA 0.70 2 22326727 22337006

Neighbor

gene id symbol gene type direction distance location
LOC110500003 LOC106609411 coding upstream 151088 22141692 ~ 22175639 (+)
LOC110501027 LOC106609383 coding upstream 207056 22117981 ~ 22119671 (+)
LOC110500917 NA coding upstream 315628 22009966 ~ 22011099 (+)
LOC100653451 LOC106609409 coding upstream 318920 21991218 ~ 22007807 (+)
LOC110499998 LOC106576327 coding upstream 378522 21920517 ~ 21948205 (+)
LOC110500014 LOC106576341 coding downstream 377120 22713864 ~ 22716877 (+)
LOC110500032 NA coding downstream 392185 22729191 ~ 22730990 (+)
LOC110500034 LOC106609434 coding downstream 557752 22894758 ~ 22914536 (+)
LOC110501029 LOC106609386 coding downstream 577825 22914831 ~ 22920359 (+)
LOC110500038 LOC106609436 coding downstream 677611 23014617 ~ 23032420 (+)
G1717246 NA non-coding upstream 55835 22236861 ~ 22270892 (+)
G1717217 NA non-coding upstream 135512 22190800 ~ 22191215 (+)
G1717218 NA non-coding upstream 136186 22190440 ~ 22190541 (+)
G1717212 NA non-coding upstream 142068 22184417 ~ 22184659 (+)
G1717204 NA non-coding upstream 190798 22135665 ~ 22135929 (+)
G1717364 NA non-coding downstream 85125 22422131 ~ 22422412 (+)
G1717500 NA non-coding downstream 326736 22663742 ~ 22663958 (+)
G1717514 NA non-coding downstream 376539 22713545 ~ 22713768 (+)
G1717538 NA non-coding downstream 400765 22737771 ~ 22743135 (+)
G1717161 LOC106576319 other upstream 145830 22175963 ~ 22180897 (+)
LOC110499980 LOC106576426 other upstream 1326590 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1767976 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 2212836 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2702813 19384972 ~ 19754609 (+)
G1717516 NA other downstream 381913 22718919 ~ 22784445 (+)
G1717520 NA other downstream 483746 22820752 ~ 22879923 (+)
G1717517 NA other downstream 512886 22849892 ~ 22851407 (+)
ruxf LOC105021811 other downstream 762009 23098972 ~ 23100823 (+)

Expression


Co-expression Network