LOC110501029 (LOC106609386)


Basic Information

Item Value
gene id LOC110501029
gene name LOC106609386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22914831 ~ 22920359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957320.1
TTTAGTCAGAAATGGTTGTCACATGCTGGTCATCTGTTTTGTAGTTAATGGAGAGCAGAGTTCAACTTCATATTTGACATTTGATATATGTACAGTTCATGTAATTGCAAGGGCCAACAGTCAGGTGTCCTACGGTGACGGACATGGATACAACAGCTCTGATCTACAAGGTCCTCTGTGCCCATAATGGGTCCTTTGAGCTGGGAGAATTGCGTGCCAACATTAGCACCATAGAAGATGACCTGGAAAGTGTGTTAGGGAATCAGGAGATGTTTACCTGTGCTGTCTCTAAGGGAAACAAACTGATAGTTGCCAAGACGAAGATGAGGTTATGCAGAGCTAAAGGATGTAGTGGCTGCAGCAATTTACACCTGTGTAAGTTCTACCTGTGTGGAACATGTCCATCCAATGAGAGACAAGGATGCCGTCTCTGCCATGAGCTGACGTCAGAGCACAACATCAGAGTCCGGAGAGAGCACCACCTGGAAGAACTGGACAGGAAGGAGCTGTTTACATTACTGCTGCAGAATGACAACGCCCTTTTACCCCCAGTTTGCTTCACATACAACAAAGGTAGTGGAGAGTACGGATACTGTCCTGACAAGGAGAAATGCAGAAGACTCCACGTCTGTGAGCGCTACATTACAGGAACCTGTGCTGCAGAGGTGGACTGTGACAGGTCTCACGACTTCTACGAGCCCCACCCGCTCAACATCCTGCAGCAGAGGGGAGTACCTAATGAACTGGTGGCATCCATGTTGTCCACCTACCGCAACATCCAGGCAATCAGGGATACAATTGATGATAGTGACAACCCACGTTGCAAAAAAGACTCTGGTAACCGCCTGCAGAAATCCAAAGCTTTACCAAATCACTGGGATAAATCTTCAGTGCCTGAAACTGGATTCAAGAGGGTTGCTGTGCAGAGTTCCTCAGCTGAGCACAAGAATATTCTGGATCTTTTCCACCAAACTATGACTGGCTTCAGTGTGACGACTATTGAGAGGGTGCAGAATCGGATCCTGTGGGAGGTCTTTTCGTGGCAAGGAGATGTGATGAGAAAGACAAACGCAGGGAAGGAGAATGAGAAGCAGCTCTTCCATGGAACAGACTCTAAACACGTGGATGCTATATGCCTGCAGAACATAGACTGGAGGATGGGTGGAACACAAGGAACGCCCTATGGACAAGGAAGCTACTTCTCCAAGGATGCCAAGTTCTCCCACAGCTACACCAGCCATTCAGAAGTCAGGTCCATGTTTGTTTGTCGTGTGCTGGTGGGAAACTACACACAAGGACACACCAGCTACCTCTGCCCCCCCTCAAAAGATGGAAGTCACACCATCTCCtatgacagctgtgtggatgATATCTACAACCCCACTGTATTTGTGGTGGTCGGGAAGCATCAGGTTTACCCAGAGTACCTTATTCAGTACAGGGAAGGGTCCAGGCCTGGGACCTATGTTCCACCACCTAACTTTGTCCAGAACCAGAGCCACCACAACATGCACTGGACATCTATTCCAGTCATGCTACGCTCACCAGCCACCCCTGTGCTGCCCAACAATGCAAGGTTCAGATCTCCTTGCCCAACAGGACCTGCCTTTGCCCAGCCCACACTCAGTACCCAGCCACTATTTTCACACTACTCAAACCCACCCAGGCCTCCCTCCAATCCCTCTGTTTCAAACCCTTCAAGACAGAGAACCCCCAGACCTACCTTGACACATGCTTCTGCACAGTTTGGCTCCCTTAACTCCTTGACACATCCATCGTTTCAGCCAGGCCTGATGACTTACGTCCCTCATCCACCACCCTGGGTCGGCTCTATGACCTCCATTCCACGCGCACCTCCACCCAGGACAAGATCACAGTTTGCTAAAATGAAAGCAAAAAGTACATCAATGGCATCACTAGATAATCTATAATCCTTGGTagtctatttttatttatttagaggGAAATTACCTTATGTGTAAATAAATTGTATTTATGGATTACATTTTGAAATGTGTCCTttttagctcagttggtagagcatggtgcttgtaatgccattgtagtgggtttgattctcaGGACCCCCCATACGTAAAGGGAatgcacacatgactgtaagtcactttggagaAAAGTGTTTGCTAAATGGCATTTATTATATCATGTGTAGTTCAGTGTTGACAAAATAAtccgaattgggctgcctgtgtaaacgcagtcataatagtttctgaatgcaccacagcataaaataaaatgttcatgttttttc

Function

NR:

description
poly [ADP-ribose] polymerase 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957320.1 True 2275 mRNA 0.47 7 22914831 22920359

Neighbor

gene id symbol gene type direction distance location
LOC110500034 LOC106609434 coding upstream 295 22894758 ~ 22914536 (+)
LOC110500032 NA coding upstream 183841 22729191 ~ 22730990 (+)
LOC110500014 LOC106576341 coding upstream 197954 22713864 ~ 22716877 (+)
LOC118943003 NA coding upstream 577825 22326727 ~ 22337006 (+)
LOC110500003 LOC106609411 coding upstream 739192 22141692 ~ 22175639 (+)
LOC110500038 LOC106609436 coding downstream 94258 23014617 ~ 23032420 (+)
LOC110500039 LOC100194705 coding downstream 113366 23033725 ~ 23040825 (+)
ruxf LOC105021811 coding downstream 178613 23098972 ~ 23100823 (+)
amdhd1 amdhd1 coding downstream 180619 23100978 ~ 23105006 (+)
klhl42 LOC106609448 coding downstream 236724 23157083 ~ 23160673 (+)
G1717524 NA non-coding upstream 33328 22878509 ~ 22881503 (+)
G1717526 NA non-coding upstream 41644 22865831 ~ 22873187 (+)
G1717522 NA non-coding upstream 65898 22803425 ~ 22848933 (+)
G1717523 NA non-coding upstream 79973 22803131 ~ 22834858 (+)
G1717538 NA non-coding upstream 171696 22737771 ~ 22743135 (+)
G1717642 NA non-coding downstream 37316 22957675 ~ 22962698 (+)
G1717649 NA non-coding downstream 53450 22973809 ~ 22974014 (+)
G1717650 NA non-coding downstream 53721 22974080 ~ 22974317 (+)
G1717653 NA non-coding downstream 59141 22979500 ~ 22979595 (+)
G1717652 nduac non-coding downstream 59785 22980144 ~ 22981466 (+)
G1717520 NA other upstream 34908 22820752 ~ 22879923 (+)
G1717517 NA other upstream 63424 22849892 ~ 22851407 (+)
G1717516 NA other upstream 130386 22718919 ~ 22784445 (+)
G1717161 LOC106576319 other upstream 733934 22175963 ~ 22180897 (+)
LOC110499980 LOC106576426 other upstream 1914694 20954576 ~ 21004439 (+)
G1717785 NA other downstream 335767 23256126 ~ 23256812 (+)
G1719225 NA other downstream 1153046 24073405 ~ 24074448 (+)
G1719268 NA other downstream 1215405 24135764 ~ 24136323 (+)

Expression


Co-expression Network