Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500037 |
| gene name | LOC106609431 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 22983636 ~ 23014604 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| FYVE, RhoGEF and PH domain-containing protein 6-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036957324.1 | False | 6283 | mRNA | 0.51 | 20 | 22983636 | 23010152 |
| XM_036957326.1 | False | 6237 | mRNA | 0.51 | 19 | 22983636 | 23010190 |
| XM_036957327.1 | False | 6336 | mRNA | 0.51 | 20 | 22983636 | 23014604 |
| TU1968644 | False | 1233 | lncRNA | 0.35 | 1 | 22983669 | 22984901 |
| TU1968648 | True | 451 | lncRNA | 0.61 | 1 | 23007572 | 23008022 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500036 | nduac | coding | downstream | 2107 | 22980135 ~ 22981529 (-) |
| LOC110500035 | LOC106609443 | coding | downstream | 10008 | 22929761 ~ 22973628 (-) |
| zgc:113263 | LOC106609430 | coding | downstream | 89481 | 22884261 ~ 22894155 (-) |
| LOC110500020 | NA | coding | downstream | 254711 | 22728126 ~ 22728925 (-) |
| LOC110500012 | LOC106576307 | coding | downstream | 270808 | 22689392 ~ 22712828 (-) |
| LOC110500040 | LOC106576294 | coding | upstream | 26694 | 23041298 ~ 23053672 (-) |
| ntn4 | LOC106609442 | coding | upstream | 57411 | 23072015 ~ 23092611 (-) |
| LOC118943006 | amdhd1 | coding | upstream | 93879 | 23108483 ~ 23110665 (-) |
| LOC110500044 | tsn9 | coding | upstream | 119385 | 23133989 ~ 23138152 (-) |
| LOC110501030 | LOC106609435 | coding | upstream | 126987 | 23141591 ~ 23153506 (-) |
| G1718355 | NA | non-coding | downstream | 1353 | 22982054 ~ 22982283 (-) |
| G1718354 | NA | non-coding | downstream | 6880 | 22976233 ~ 22976756 (-) |
| G1718352 | NA | non-coding | downstream | 13053 | 22970379 ~ 22970583 (-) |
| G1718275 | NA | non-coding | downstream | 61231 | 22828636 ~ 22922405 (-) |
| G1718379 | LOC100194705 | non-coding | upstream | 19182 | 23033786 ~ 23040823 (-) |
| G1718398 | NA | non-coding | upstream | 47306 | 23061910 ~ 23062174 (-) |
| G1718399 | NA | non-coding | upstream | 51046 | 23065650 ~ 23065918 (-) |
| G1718415 | LOC106576293 | non-coding | upstream | 84411 | 23099015 ~ 23100802 (-) |
| G1718381 | amdhd1 | non-coding | upstream | 88009 | 23102613 ~ 23104025 (-) |
| G1718181 | NA | other | downstream | 17759 | 22882496 ~ 22965877 (-) |
| G1718277 | NA | other | downstream | 132189 | 22832621 ~ 22851447 (-) |
| G1718273 | NA | other | downstream | 163306 | 22818310 ~ 22820330 (-) |
| G1718263 | NA | other | downstream | 167745 | 22787477 ~ 22815891 (-) |
| G1718397 | NA | other | upstream | 42777 | 23057381 ~ 23057819 (-) |
| igf1 | LOC100136517 | other | upstream | 351496 | 23366099 ~ 23386794 (-) |
| G1718586 | NA | other | upstream | 467446 | 23482050 ~ 23483029 (-) |
