klhl42 (LOC106609448)


Basic Information

Item Value
gene id klhl42
gene name LOC106609448
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23157083 ~ 23160673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577162.2
TTTCCGGTTGAGCAAGCAAGTGACGCAACCCACAGGATCAAAACAGGAAATATGCTGCCAATTTCTCCTCAAAAACCAACTGTAGCTTTCTGCAGATTATCTCGACAATGCAAGGAAAGTGTGTTACCCAATATAAACATCTTAAAATTGACCACATGGTCCAGCAAAACATCTTCTTTGGATGTACGTCGAGATAATACCTGGTGTTTTTGAAAGATAAAGTGGCTAGCAAGATTTCCAAGTCACTCTTAGcctcttgctagctagctagctagcccacTCATAACTGAGTTGAAATTAACCAGGCATCATCCAGACGTATGGGCTGAACATTACCATATATAGGGCTGGTGACTGCGGTGCGACTAGAGTTGCAGACCACCCCTGCGCCTGAGAAATGTAAACTGTGACAGGCCGTCATTAACAGATCGAGGCCGGAAGAAGACAGTCAACAAAACAGATCACTTgacaacattagctagctaacccaACCACTAAACATGTCATCTGAACAAATAATCGTAATTGTCATGGATGACAAAACGTACAACGTCAACAAAGGCAAGTTGATAGAAAAAAGCGACTACTTCCGTGCACTGTACAGCTCTGGGATGCGCGAGTCCAGAGAGGATTCAGTGCAACTGCAGGGGCTGAGTGTGCCAGGGCTCGAGCTGGTCCTGGAGTTTATCAACACCTCCAAAGTGAAAGTAGTCAACGAGACCCTGGAAGACCTGATTGAGACTGCATCTTTTTTGCAAGTCACCTCTATCCTAAAACTCCTTTCGTCTGAAATTCGACAAGAGAATTGTGTGGAACTCTACAGCCTATCTGAGGTATATGGAACTCATGATCTACGCAACGCTTGTCTCAGATATATGAGCTGTCACTACCACCCGATGCTGCGGAGACCAGAGTTCAGCGACTTACCTGCTGCCCTGCGCAACCAGGTTAGAGAGATGCGTATGAAAGGCACAGCCACTCTGGTGGCTATCGGACTTTTCACCTGTCTGGCTCTGGACCTACCAGACCAGGACGAGCCCTGGTCCATGCTGAGGTATGGGGAAGTAGAGCAGCGTTGGAAGCCGCTCGCTAACAACCTGCCCTCTGACATGGTCAATGTGAGAGGCTACGGCTCGGCCGTGTTGGACAACTACCTATTCATTGTCGGTGGGTACAGAATGACCAGCCAGGAGATCTCAGCGGCACACTGCTACAACCCCTGTAGAAATGAATGGAACCAGGTAGCCCCCCTGAACCAgaagagGTCCAACTTCAAGCTACTGGCGGTACGAGGGAAGCTGTATGCAGTGGGAGGCCAGTGTCAGGGCACTGTTGAGTGCTACAGCCCTGAGCAGGACTGGTGGACCTGTGTGTCGTCACTACCCGACCCCCTGGCAGAGTTCTCTGCCTGCGAGTGCCAGGGCATGATCTACGTCATGGGAGGATATACTGCCAGAGACAGGAATACCAGCGTACTCCGCTACTGCCCCACCTCTGACAGTTGGACAGTGTTCCGCTCCTGCTCGGCCCACGTGCGTAAGCAGCAGATGCTCTCGGTGGAAGATACCATCTACCTGGTGGGGGGGTACACCCACGAGCTGGAGCCGGGTCCAGGGCGGCGGGCCAGCCAGACAGAGGACATGCTGACGGTGCAGTCTTACAACGTGATCACGGGGGAGTGGCTCCACCTGAAGGACAACACCTCCAAGTCTGGCCTGAACCTCACGTGCACACTGCACAACGACGGGGTCTATATTATGTCGCGCGACGTCAGCCTGCCCACCAGCCTGGAGCACCGCGTCTTCCTCAAGTACAACATCTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTCCCCGCGCTGGGCCAGAATATGCTACTCTGCTCCCTCTATCTGCCCAACGTTCTATGAGCGTTGCGGATGGAATGAGAGAGACTACATCATGTGCCACAAGAGGCTTGTTTGTGCGTGCTGCGGCTACATAGCTCCCGTGAAGAGAAGTGGTAACGGTAGAGCTGTAGATGGCTGCAGTATGAAACAGTATGGCCAAATCCCCGTTGGTGGGGCAAAATCTAGAAAGACACAGACTTGTTACATTATTTAAACCTTAAAGTAGCTACAAGCACAGGCAAAGCGACAGTCATGCATTGTGGGTCAATGTCTAAGTTAGCATAGCAGCATTGGGCTACTATCGAGATCCATTTTCGGATTCTTTGATTAGAAGTAGACTTGAATCATATAGAACATTCCCCATTGTTTACACTGCAAATTAAAAATTAAAGATTTGCAAAAATCTTCGTTTTAGTGTTCACTACAAACCTTAAACGCAAATAAGTAATATAATTAATACGTCATATTGGATATTGAAGAAAGTTTGTAGCCAAGAAGTGGCTTTGGTGTTACACTGCTTGTTTTGCAATGTGCAATTGAAGAACTTAAATAAAATGCTAAGCTGATGCCAGACCACAATTAATAACTAAACAAATGTTTTAACTCTTGCGTGAGAAGATATAATGGTAGAATCATGAACGGGCAAAATTGAGAAATTCATTGGCTTGATTTAACTTATGAACATTGTTTAGAAAACAAACGCTAAACTCAGCAGCAGTACAGTTCAATGAAATGGATAAGGAACGTGCCTTCTCCCTCACCTGGGGGGATTTTATACAGATGAAGAAGAGTTGAATTGTAAGTGACCAACCAAAACTGTGTCTTTTTTCCCAATTCACTGTTGAATTATAAGGAAAGGGCTTTCATTAGGGTACGTTAAGGACAAATTGATGAAATACAATGAGAATGTAGTTTTGGTTTAAAGGTAGACTCCGCGATATGAAGCAGAAAAGTAAACAACATAGTGGCTCAATTTCCACAACTAAGAAGCGTAGGAGTGTGAGGCTCGACTTCTCAGCTATTTTGGTGCCCTGGCTACCACGCTGTGAACAGGGTGACGCGAACCCGTgcacagatactgtgtgtgactgtcgctcatctcaatatctccgGCGCTGCTTTCTGCAACGTAACTTTGCTGAGTCTACTTTTAATTAAAGGGGATTACAGACCTTTTCTGTGGAGATGGTTTGTCTTTCTGTTGATAATACAACTACGTCGTTTGGCTTCTAAAGATGTGTTGGAGTTTGATGAAGGGACTGTATATTGTTTTGTCACCTCTGGTTATGTTCTGACAGATGCCTTGGACTTTGACTTAGAAGATTAAAGAAAATATT
>TU1967992
CACGTGCACACTGCACAACGACGGGGTCTATATTATGTCGCGCGACGTCAGCCTGCCCACCAGCCTGGAGCACCGCGTCTTCCTCAAGTACAACATCTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTCCCCGCGCTGGGCCAGAATATGCTACTCTGCTCCCTCTATCTGCCCAACGTTCTATGAGCGTTGCGGATGGAATGAGAGAGACTACATCATGTGCCACAAGAGGCTTGTTTGTGCGTGCTGCGGCTACATAGCTCCCGTGAAGAGAAGTGGTAACGGTAGAGCTGTAGATGGCTGCAGTATGAAACAGTATGGCCAAATCCCCGTTGGTGGGGCAAAATCTAGAAAGACACAGACTTGTTACATTATTTAAACCTTAAAGTAGCTACAAGCACAGGCAAAGCGACAGTCATGCATTGTGGGTCAATGTCTAAGTTAGCATAGCAGCATTGGGCTACTATCGAGATCCATTTTCGGATTCTTTGATTAGAAGTAGACTTGAATCATATAGAACATTCCCCATTGTTTACACTGCAAATTAAAAATTAAAGATTTGCAAAAATCTTCGTTTTAGTGTTCACTACAAACCTTAAACGCAAATAAGTAATATAATTAATACGTCATATTGGATATTGAAGAAAGTTTGTAGCCAAGAAGTGGCTTTGGTGTTACACTGCTTGTTTTGCAATGTGCAATTGAAGAACTTAAATAAAATGCTAAGCTGATGCCAGACCACAATTAATAACTAAACAAATGTTTTAACTCTTGCGTGAGAAGATATAATGGTAGAATCATGAACGGGCAAAATTGAGAAATTCATTGGCTTGATTTAACTTATGAACATTGTTTAGAAAACAAACGCTAAACTCAGCAGCAGTACAGTTCAATGAAATGGATAAGGAACGTGCCTTCTCCCTCACCTGGGGGGATTTTATACAGATGAAGAAGAGTTGAATTGTAAGTGACCAACCAAA

Function

NR:

description
kelch-like protein 42, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577162.2 False 3226 mRNA 0.47 3 23157083 23160673
TU1967992 True 981 lncRNA 0.42 1 23159171 23160151

Neighbor

gene id symbol gene type direction distance location
amdhd1 amdhd1 coding upstream 52077 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 56260 23098972 ~ 23100823 (+)
LOC110500039 LOC100194705 coding upstream 116258 23033725 ~ 23040825 (+)
LOC110500038 LOC106609436 coding upstream 124663 23014617 ~ 23032420 (+)
LOC110501029 LOC106609386 coding upstream 236724 22914831 ~ 22920359 (+)
LOC110500046 LOC106609461 coding downstream 3432 23164105 ~ 23189656 (+)
ascl1a LOC106576285 coding downstream 58271 23218944 ~ 23220765 (+)
LOC110500049 LOC106576281 coding downstream 135110 23295783 ~ 23313876 (+)
th2 LOC106609447 coding downstream 153662 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 180515 23341188 ~ 23353769 (+)
G1717725 LOC106609435 non-coding upstream 9314 23146757 ~ 23147769 (+)
G1717720 NA non-coding upstream 22674 23133232 ~ 23134409 (+)
G1717689 NA non-coding upstream 25377 23121884 ~ 23131706 (+)
G1717688 NA non-coding upstream 48647 23108190 ~ 23108436 (+)
G1717655 NA non-coding upstream 172183 22983213 ~ 22984900 (+)
G1717730 LOC106576289 non-coding downstream 933 23161606 ~ 23162406 (+)
G1717680 NA non-coding downstream 18872 23179545 ~ 23184074 (+)
G1717749 NA non-coding downstream 37365 23198038 ~ 23209398 (+)
G1717748 NA non-coding downstream 38055 23198728 ~ 23199596 (+)
G1717786 NA non-coding downstream 96709 23257382 ~ 23257585 (+)
G1717520 NA other upstream 277160 22820752 ~ 22879923 (+)
G1717517 NA other upstream 305676 22849892 ~ 22851407 (+)
G1717516 NA other upstream 372638 22718919 ~ 22784445 (+)
G1717785 NA other downstream 95453 23256126 ~ 23256812 (+)
G1719225 NA other downstream 912732 24073405 ~ 24074448 (+)
G1719268 NA other downstream 975091 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 1117158 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1155965 24315919 ~ 24321712 (+)

Expression


Co-expression Network