ascl1a (LOC106576285)


Basic Information

Item Value
gene id ascl1a
gene name LOC106576285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23218944 ~ 23220765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577164.2
GCCTTTCTCAGGACTCAGTTCAGACTGAGGAGTGTGCGAGGCAGAAGCCCACAAGACCGCCCATTAAACACGGCTAAAGTGAGCATTAAGCCACACGTGAACGCCACGAGCAGGACGCAACTGCTACCGATCAATCCAAAGAAAAACTCTGAGATTCTCTGCAgctcttattttttatttttcaataCGTGCCAATGGACATCACAGCAAAGATGGAAATAAATGTGAGCCAGCAGCAGTTCATGCCGCCCTCCTGCTTCTTTGCTGCCGCAGCGCAGAGTATCCAGCTCAGCCCTACCAGCAGCCAAGGGAGCGGCAAGTCAGCATCCAAGGTGAAGAGACAGCGCTCATCCTCGCCCGAGCTGCTAAGATGCAAGAGGAGGCTGAACTTTGCCGGCTTTGGTTACAGCCTGCCGCAGCAGCAGCCGCACACCGTGGCGCGGCGGAACGAGAGGGAGCGCAACAGAGTGAAACTTGTCAACAACGGCTTCGCCACTCTCCGGGAACACGTCCCCAATGGCGCGGCCAACAAGAAGATGAGCAAAGTGGAAACGTTACGGTCGGCGGTGGAGTACATTCGCGCACTACAACAACTTTTGGATGAGCACGACGCCGTGAGCGCAGCGTTTCAGTCCGGGGTCCTGTCGCCCAACAACTACCCCAACGAGATGAACTCCATGGCAGGCTCTCCAGTGTCCTCCTACTCGTCCGATGAGGGGTCTTACGACCCTCTCAGCCCCGAGGAGCAGGAACTCCTGGACTTCACTAACTGGTTCTGAGAAACTGTATCCTATAAGGAATATGGATCAATTGAATGATGTAAGCTCTCAGCATGGCTCGGGAGGATTACAGAGGAGCTCGCGCCCTCTAGAACAAGACGCACTGAGCTGGCGTTCTGCTCCGGTCGTCCACGACCCAGTCCACCTAAAGGAACCGCCTTTGCAACCAGAGAAACTGCGGACATGCAGGCCAGTGTTGAGCAAAAACGCCAAAGGACTAAATAGAAAACAGGCTCTCCACGTCTGACAGCGTGGGAATCCAACCTTCCAGCACATTCGCCCACGAAAACAACATTTCAAAAGTGATTTTACATCAGCACACAAAACATAATTTCAAATGTTGTTCTCGAACTATGCTTAATCCAATCAAAGAACATCAACCCTTCTTTGTAAACTCCTGTGACATTTAGTTCTAAAATGCTTCCAATGTGCGGATTTTATTATATGAAATTCTATATCAAACATGTTTTTGAAATATATCAAGATATTTTTGTATGTAAAGAGATTTTTTTTAGATGTTTTcttttgtatatatttatattgatAAGTTGCTCTTACCTCTTGCCTATTTTAGACTTGTATAATGCTCTGCAGCTGGCTATTCTGTGTATGGTCATTGATTAATGAGGTTTCAAGAAGGGGTTTGACACTCCGACGTTTGAATTTAGCACCAATGTGTCTTATTTAATAGGAAATACATGTTATTGTACATGGAGTTCACGATGATCAAAGGTTATGCAGCTATTGTCCAAACAGAGCACAATGGCGATTCATTGTCTATTGCTATACTGCCAGCTCCACACTGCCTTTACTTATATCATGTTGGTTGAAAAGAGAAAAGCCTATAACCATATTTTCTACACTCTAGTCTCATAATAAAACATTTTCTA

Function

NR:

description
PREDICTED: achaete-scute homolog 1a

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0061195 taste bud formation biological_process
GO:0002070 epithelial cell maturation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021984 adenohypophysis development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577164.2 True 1669 mRNA 0.46 2 23218944 23220765

Neighbor

gene id symbol gene type direction distance location
LOC110500046 LOC106609461 coding upstream 29288 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 58271 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 113938 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 118121 23098972 ~ 23100823 (+)
LOC110500039 LOC100194705 coding upstream 178119 23033725 ~ 23040825 (+)
LOC110500049 LOC106576281 coding downstream 75018 23295783 ~ 23313876 (+)
th2 LOC106609447 coding downstream 93570 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 120423 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 172762 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 184697 23405462 ~ 23423738 (+)
G1717749 NA non-coding upstream 9546 23198038 ~ 23209398 (+)
G1717748 NA non-coding upstream 19348 23198728 ~ 23199596 (+)
G1717680 NA non-coding upstream 34870 23179545 ~ 23184074 (+)
G1717730 LOC106576289 non-coding upstream 56538 23161606 ~ 23162406 (+)
G1717786 NA non-coding downstream 36617 23257382 ~ 23257585 (+)
G1717787 NA non-coding downstream 37072 23257837 ~ 23258062 (+)
G1717789 NA non-coding downstream 39380 23260145 ~ 23261049 (+)
G1717790 NA non-coding downstream 40570 23261335 ~ 23261638 (+)
G1717791 NA non-coding downstream 40905 23261670 ~ 23261872 (+)
LOC110500038 LOC106609436 other upstream 196180 23014617 ~ 23032420 (+)
G1717520 NA other upstream 339021 22820752 ~ 22879923 (+)
G1717517 NA other upstream 367537 22849892 ~ 22851407 (+)
G1717516 NA other upstream 434499 22718919 ~ 22784445 (+)
G1717785 NA other downstream 35361 23256126 ~ 23256812 (+)
G1719225 NA other downstream 852640 24073405 ~ 24074448 (+)
G1719268 NA other downstream 914999 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 1057066 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1095873 24315919 ~ 24321712 (+)

Expression


Co-expression Network