LOC110500049 (LOC106576281)


Basic Information

Item Value
gene id LOC110500049
gene name LOC106576281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23295783 ~ 23313876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577165.2
TCATTCGCGTGACAGGGATACAAACCATAAGGGGGTGTGGTGTCAGGTGGGACAAGATGAATGGCTGAAGTTGAACTTGAGCTGCTCAAACAAATTCGACCAAAGCACACACATTCAGCATCGGTAGTTACATACCTGCGCAACGAGAAGACTGGAGGATGGACGCGGCATACAAAAATATTAACGGGGACTATCCCACACCGGACAATGGCAAAGAGAGGAAAGGCTCCATGTACCTGGAGGAAGAGACCAGTGCCAAGGCGGGGGTGCTGTCCTGCTTCTTCTCCCTGAAGGAGGAGGTTGGGGCGCTGGCCAAAGCCCTCAGGCTGTTTGAGGAGAAGGGCATCAACCTGATGCACATCGAGTCTCGCCCGTCGCGACTGAACAACCAGGAGTTTGAGTTCTTCATCAGCGTGGACACCAGCTACTCCAAGTCCCTGGACGAGGTCATCGACGGCCTGCGCACCGAGATCAGTGGCCACGTGCACGAGCTCTCACGCAACAAACAGAAGGACACAGTTCCATGGTTCCCCAATGACATCCAGGACTTGGATCGCTTTGCCAACCAGATTCTGAGCTACGGATCTGAGCTGGATTCTGATCACCCTGGCTTCACAGACCCAGTGTACAGAACCAGGAGGAAGGAGTTTGCCGACATTGCCTACAGCTACAGACATGGCCAGGTCATTCCCAAGGTGGAGTACACAGCAGAGGAGAAGGCCACATGGAGCACAGTGTTCAATGAGCTGAAGACTCTGTACCCCACGCACGCCTGCCGCGAGCACAACCGTGTGTTCCCCCTGCTGGAGCAGTACTGCGGCTATAGGCAGGACAACATCCCCCAGCTGGAGGACATCTCACGCTACCTGCAGTCGTGCACAGGTTTTCGGCTGCGCCCAGTGGCTGGCCTGCTCTCCTCTCGGGATTTCCTGGCTGGTCTGGCCTTCCGAGTCTTCCACTCTACACAGTACATCCGGCACCAATCCAAGCCCATGTACACACCTGAGCCGGATATCTGCCATGAACTCCTGGGCCATGTTCCTCTGTTTGCTGACCCCACCTTTGCCCAATTCTCACAGGAAATCGGTCTGGCTTCCCTGGGTGCCCCCGACGAGTACATTGAGAGGCTTGCTACTGTCTATTGGTTCACAGTGGAGTTTGGCCTCTGCAAGCAGGGATCTGAGATCAAGGCCTATGGAGCTGGCCTTCTCTCATCATTTGGAGAGCTGCAGTACTCTTTGACAGACAAGCCCAAGATTCAACCATTTGACCCTGCAAAGACCAGCCTCCAGAAGTACCCAATCACTGAGTTCCAACCCGTTTACTTTGTTGCAGAGAGCTTTGATGACGCCAAAGAGAGAGTCAGGAAATTTGCCGACACCATCCCCAGGCCTTTCTCAGTGCGCTACAACGCGTACACCCAAAGCATTGAAGTCTTGGATAACACCCAGCAGCTGAGAAACCTGGCTGACAACATCAGTGGGGAAATTGGGATCTTGTGCAATGCCCTGCGGAAGATGGAGTAAGGAGACCACTTTGGAGACATCCTTCAATACTGACGTGCGCAATGATAGAATCTCAATGCATTTCATCAATCTTGTAGATTTCCATTATACTCTTTGTATTTATAATCTGTGTGCTTGTCCATTATAAAATCTAATGCATTCTGCTTCATCTTTAtataaattattcataaatacctACTGCATCCCAGACACTAGTCATTTTAAGTACATTTTCATTTTAGTCGTCAATATTAGAGGAGCACTCGCTCAATGAATCACACAGACATACTACTAGCCAATGAAAATGCACATCGAAATTAGTCACTCATTGTAAATATGAAGTTACATAAAACAAGTATTAACTTTAAATGAATTATTCGATAAGTGAGTGAGTTTTTCGTTAGATTTTTGTTAACACCAACAAGGAGAAGTATTATTTTATCATACCCTTTTCAGTATGTTCTAGAAATCCAACACCGCCACTACAGTATTGATAGGTTAACCGATGTCATTTTCTGTAACCAGCTGAGAGGGATAACATTGGAAGAGTGCTGTTCCAGAACTATTAGCTCAGGCTTTGAAGACGATCTAATTCGCACTTGAGTATTCTATCTATATTGGTTAAAtcgcaaataacaaaaatacatCCTTGCATTATGCTAGAAATAGCTAGGCCTATATAACACAATAAGGAAATGCAATGTGTATGTCCAGCATGTTAGAGAATGTGTTTGATTATATCCTGAATTCGGATTAATCCAAATGATCGACTGTTTTTCCATTCCTTACTATCACGTGTTTGTATAATATGCATGAAAATGTGTTATTAACTTGCCAAATAAATGTATGCTTA

Function

NR:

description
phenylalanine-4-hydroxylase-like

GO: NA

KEGG:

id description
K00500 phhA, PAH; phenylalanine-4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577165.2 True 2358 mRNA 0.47 13 23295783 23313876

Neighbor

gene id symbol gene type direction distance location
ascl1a LOC106576285 coding upstream 75018 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 106127 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 135110 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 190777 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 194960 23098972 ~ 23100823 (+)
th2 LOC106609447 coding downstream 459 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 27312 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 79651 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 91586 23405462 ~ 23423738 (+)
LOC110500067 LOC106609471 coding downstream 187248 23501124 ~ 23504811 (+)
G1717800 NA non-coding upstream 20728 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 29097 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 33289 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 33911 23261670 ~ 23261872 (+)
G1717790 NA non-coding upstream 34145 23261335 ~ 23261638 (+)
G1717822 NA non-coding downstream 15713 23329589 ~ 23330057 (+)
G1717875 NA non-coding downstream 129815 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 172223 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 175466 23489342 ~ 23489551 (+)
G1717785 NA other upstream 38971 23256126 ~ 23256812 (+)
LOC110500038 LOC106609436 other upstream 273019 23014617 ~ 23032420 (+)
G1717520 NA other upstream 415860 22820752 ~ 22879923 (+)
G1717517 NA other upstream 444376 22849892 ~ 22851407 (+)
G1719225 NA other downstream 759529 24073405 ~ 24074448 (+)
G1719268 NA other downstream 821888 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 963955 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1002762 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2297940 25611816 ~ 25612268 (+)

Expression


Co-expression Network