th2 (LOC106609447)


Basic Information

Item Value
gene id th2
gene name LOC106609447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23314335 ~ 23327014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577167.2
GTATCCGGTAATAGGCCTATATAGACTATTCGATCAAACAAATCATAGATACTCTGCAATATTATTTTTAAGACAGTCTACGATAAAAATTGACATAAGTTCAATGAAGACAGAGAGTGTGGCGCAAAACATTCCGTTCGTCGGCAGAAAGCGAAGTCTGATCGAAGATGCCCGGAAAGAGCGCGCCAGCGGTTCATCTTCCCCTGGCCCATCGCGGGGCGGTGAAAACTTTGTGTTTGAGGAAAAGGAAGGAACAGTGACACTGAACATTCTTTTCGCACTCAGCCATGAGAAGAATGCAGGGTTCTTTAAAACTGGCAAAGTCTTTGAGACGTTTGAAGCTAAGCTTCTGCATATTGAGAGCCGACCAGGGAGGAAGTCTAAGAACAGTGGCTGTGATGATCTGGAGTTCTTTATGAGGTGTGAAGTGCACATCTCGGACACAGACATCTTCATCAACTCACTCAAGAGAGTCGCCGACGACGTACGCACCATCCCAGAGGAAAAAGTTCCCTGGTTCCCCAGAAAGATCAGAGATCTGGATAAATGCAACCTGTTGATAACGAAATATGACCCAGATATGGACCAGGATCATCCAGGATTCAGTGATCCAGAATACAGAAAAAGAAGGTGCTTCATCGCTGAACTTGCAGCAAATTACAGACAGGGGGAACCATTACCCAGAGTGGAGTACACACCAGAGGAGGTGGCCACATGGAAAGAGGTGTACCGGACCCTGAGGACCATCTACCCTGACCTGGCATGCAGACAGTTCCTGGGTGGGCTGCAGCAGCTGGAGCGGGAGTGTGGCTACGGAGAGGACAGTATCCCCCAGCTCCGGGAGGTCTCTGCCTTCCTCAGAGagaagacaggcTTCCAGCTGCGTCCGGTGGCAGGGCTACTCTCCGCCAGAGACTTCCTAGCTAGCCTGGCCTTCAGAGTGTTCCAGTGTACCCAGTACATCCGCCACGCCTCCGCACCCATGCACTCCCCGGAGCCAGATTGCTGTCATGAGTTACTCGGCCATATTCCTATGCTTGCAGACAAAGAATTTGCCCAGTTTTCCCAGGAAATTGGCCTAGCCTCACTGGGAGCATCAGACGAGGATATTGAGAGACTCTCAACTTTGTACTGGTTCACGGTGGAGTTTGGACTGTGTAAGCAGAATGGAACTGTGAAGGCATATGGTGCCGGCCTCCTGTCCTCATATGGAGAACTCATTtatgctctctctaacgAACCTGAGTACAAGCCATTCAACCCAGAGGAGACAGCAATCCAGCCTTACCAGGACCAGACTTTCCAACCTGTCTACTTTGTCTCAGAAAGCTTTGAGGATGCCAAGATTAAGATGAGGCGGTACTCGTCGTCCATCCAACGGCCCTTCTCTGTCCGGTACGACCCATTCACTTGCAGCCTGGAGGTTCTGGACCAACCCAGTAAGATCCAGCATGCCCTAGGCCAGATGAGAGACGACCTGAAGATACTCCAAAGTGCCCTGGAGAAACTGGGCTGAGGGCCTCAACACTGAGCCAGAGACTCAGGGAGTGAAACTGATACATACCTCTGGAGGGGTGGAAAGGGGAAGCCATTTTGGGTCTTTAAAAGTGCAATCTGTCATTTCTCTGTGTGGCCATGGGGCCAAATGCACAAACAATCAATGCTCAAATTGCACAAAATACAGTAGTTCCATTTAAGGCAATCAGTTGAATATCCACCTCTTCAATCCTGCTGGGCTAATActtgcattattattattgtattttttagAGACTAAACTAGATTTAGCATTTAAAAATGGATGtgaaatactgtgtatatatttAGTTAACTGAAAAACATAATTTATATTTACATGCAAGATTCATTAATATTTCCTGGTTGAGTGCATGTATTGATATGTACAGTGACGTTATACATGTATTGTGAGGAGAATGTACAaagtaatacattttatttttttcagtCCAATCACAAAGggcatgaaagagagagacacacacatgggGGTAGGAAATGTACAGGCTGAATATGTCCGAGAATGTTTATCTTAGTAGAGAGATTACAGAGAAAAACTTTAGAATGCATGTGTAAAATAGTGATCAGAAAGAGAGCATGGAGGGAGATCAAGGAAAGAGACAAAAAAGTATACAAAGTCTGTGCATTTGCGTTTGAGAGAGCAAGCGAgcaagagacagagcgagagggaaCATGAACATCAAAGAGGGTGGGAGTACTACAATATAAGCCCATGTGCCACTGCCTCCCATTCCAAACCAACTGTTTCCATTTAGAAAATTCTTGGAACCCATTTGTCTTCACGTGTTATTAAGTAAAGGGAAGGAGCTAATTATGAATGATTTAAATATCATGTTTCCTCAGCTGGCTACTGTCAGAGCCAGTACTGAGGCCCAGTGGATCTAAAGCTGGACTTGGTCACACAGACCTCACAGTATAACACTACACAGTCAGTAGGGTTTCACAACTGGCATGATAAACTCTCTCCAtcgcctctctcttcctctctctacctgtggGTTCAAGGGGTAATAGATGCCTTGTTTCTGTATCAGTGACAATGTGTCTGCACTAGAGTTCACCCGTATTCATTTTAAAGCCAGAACGCAAATTGGTTCATAGATCTACTCCGACTGTAAAACATCATGATGTACACAGTGGCTGTGAAAGCCTCCGACCACCTAGAGTGGGAGGCCTTCCTGTTCAATTATTCCAGTGTAAATCAAACATGGTTCACTTTACTCACAGAGAAACACAACCTCTCCAGTGGAGAGAAAATGGTGCACAGAGCCGAAGATTGATCTACAATACCGCTCGACTTGAGTGCAGCAGTGCACACATATCCACTTGCTTAACCCAAATTCAAACACTTAATAATTTTGCATCTCTCAGCTTACATCCAGCACAGCTCGAATccaaaaatccccccccccccccccagaaaatcACAGACCACTGGGATCCAAATCTGCTGAGGCCCCTAAACACAAAAGGGGTTGCCATGACGATACGATAACCACTACTGGTTCCAAGCAAAATTATCCTGCCTCACATACTAACCACAAATCCCCCAATGATGTACAGTATCATCCTGCCTTCAGAATTTAagtgtttcctaatgtcatggaCCATCGTTACCTTGGCACGCTAGCCTCCCCAGACTCAAAAGGATGGGTCATTGGGGTTCACAGAGTCCTCGCTGAAGACATAGATGAAGCACAGATCATGGACTGTTTTTTGCCGCATTCATAAACAAAAAAATGCTGCTAAACACAATGATTACTGCACAGAGACACTTGAAATTAAACAATGACCAAAATGATCCAATTTACATTTTGTGTAACCCACTGTACCGAGTGCTCTAATGATTTATCGTAGTCACATTTAGTCTGTATTGTAATGCTTTGCAGCCTTTTCTCTCAACTGCCCTCATCCAGATCAACACATTTCCACTTCAGGCTGATTTTACATCGTGTAGGCCTAAGAAAATCCCCAGGAGATTAAaagaaagtatt

Function

NR:

description
tyrosine 3-monooxygenase-like isoform X1

GO: NA

KEGG:

id description
K00501 TH; tyrosine 3-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577167.2 True 3533 mRNA 0.45 12 23314335 23327014

Neighbor

gene id symbol gene type direction distance location
LOC110500049 LOC106576281 coding upstream 459 23295783 ~ 23313876 (+)
ascl1a LOC106576285 coding upstream 93570 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 124679 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 153662 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 209329 23100978 ~ 23105006 (+)
LOC110500052 NA coding downstream 14174 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 66513 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 78448 23405462 ~ 23423738 (+)
LOC110500067 LOC106609471 coding downstream 174110 23501124 ~ 23504811 (+)
ada2b LOC106609445 coding downstream 178034 23505048 ~ 23510558 (+)
G1717800 NA non-coding upstream 39280 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 47649 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 51841 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 52463 23261670 ~ 23261872 (+)
G1717790 NA non-coding upstream 52697 23261335 ~ 23261638 (+)
G1717822 NA non-coding downstream 2575 23329589 ~ 23330057 (+)
G1717875 NA non-coding downstream 116677 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 159085 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 162328 23489342 ~ 23489551 (+)
G1717785 NA other upstream 57523 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 213526 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 291571 23014617 ~ 23032420 (+)
G1717520 NA other upstream 434412 22820752 ~ 22879923 (+)
G1719225 NA other downstream 746391 24073405 ~ 24074448 (+)
G1719268 NA other downstream 808750 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 950817 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 989624 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2284802 25611816 ~ 25612268 (+)

Expression


Co-expression Network