LOC110500052


Basic Information

Item Value
gene id LOC110500052
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23341188 ~ 23353769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958469.1
ATGGCTGGTCTTTATCCCATCAGAAGAAGCTTCATGTCCATTCTGGTGTACCATTCTTGCGTACCACGTAGGCCCCCCAAGCCTGCTGTGGACAGTGGAGAGTTCACTGTTGCCCTGAGCGACGTCCTGATGGCCTGGAAACACTTACTATTAGACAACCTTCACCTGCCCCTTTACAATGACTCTTCCTGACCAGAAAACTATGACATCATCAGGAAAGAATACGACTCCTTTCTGAAGCGCACCAACACTATGGACTTGATTGATATCCGCTCTATGTACAAACAGCTGAGGGTTGATCCGGACCCTGAGGAGCCTCTGAGCTCAGTCCAGCTGTTTCAGTCCAGTAACATGGAGACCTATGAGGTGAGGGATTCCCTGTCCCAGGTCCCCTCGACTCATCAAGCAAGTCAAAGCCATACAGCACACAGGCTGCTAAATCCCCAATGGGTAGGAAAGGTGGCGAGGAGGGTCTTCTGCTCCTATCTGGATCAGCTGGTCAACTCCAAGAACGACATGGCCCTAGCGCACACCCTTGACACCCCTGGCAGATCGCTCGGACGTGTAGCTTTTACTGACCTGAAGCACGGAGCAAACATGTCACTCTTCTTGGCTGCGACATCATTTGCCAGAGCAGTCCAGCTGGGAGGAAAGGGCTATGCCCCCGCTGAGTCTGACCCCCTGAGGAAACATGTTAAAGGCCTGTCAGACTTTGTCCATTTCACAGACAATCTGGAGGAGATATTGGGAGACAACCCTAACCCAAGTATCAGGGCAGCTCTGTTGGAGGGGTGGGCCAGTGGAGATGTCAGCTGCAGCATACACAATGAGACCGCCAAGGACCTCAAAGAGCAGATCGCTCAGATCCACCTGTCCCACAGACTGCAGTCGGCTAGTGGGACAGGGATCAGCCCAGCCAGGCCTAGATACCATGCTATTAACCACACCACTGCTTATGGAGGTCGGGAGACGAAGGTCCTGATAGCATTGCTGGATGAAGATGCTTTGGCACCGCCATTCAGGAACAAGGCAGTCTTACTCTCTGCGGATCAGGCTGTCCTCAGTGTGGAGGAGGGGACCTGCATGCTGTTACTGTTCCGATCCCCTGAGGTTCCCACGGGCTCCTCTCCAAAACCCCTGCAGCCCCACGTCCAGGAGCGACAAGATCAACTCAAACCCAAGTTTGCCTCCACGTACCAGGACGACTCGAAGCCACCGCGTGCTGGACTTCCGCAGCATCATCCAGGGCCCCACCTGTGTGCAACAGGCTCCCAAGTGGACCCTCACTACTGTGGACTCCACCTCTGCCCAGCTCCTCGACAGCAGAGtggaggTTTACCCAGAGGCTGAGAGGAAAGAGGCCCAGCGAGGAGGCACGACCCGGGGGGTTGCCACAGCGCTGGGGCCCAGGAGTGGAGCAGGCGGGGGCGGTCTGAAGACCAACATCCAGACAGAAGGAAGCAGCAAGGCCTGTAAACGGAAGCTGGTGGATTGTAGCGAACATTGTGGGTCAGAGAACCAGCTCCCTCTGAAGAAACCCCTCCACCACTGTAACATCAACCAAATTGTCAGGGAAGAAAGCCCCAAGTAAGAAGAAACTGATTGCCGGACAGGGCAAGCTCACCAGCTTCTTCAGATTGTGTAAACTATTCATTGTCGTGTTGAAGGAGAATGCAGTACTAGAaatgttgttttatttaatcaatggTCTGTCTTCTTTGAAGCTGAATGTTCCTGTAATCAATTGCACTTGTTTTTCCCCCAGTGGAGTTTGGCCTGATTTCAGAGGCTTTATTGTActttctatttattttttgccTCTGTTGTGCTTTCCAACAATTGACAGACATCATCATTTTGAAAGAAAGATCGCCAGCTGTCGTGCGTCTGTGGGAGAGTGTAATGCAATGATGCAGAAGAGCTGTTGAGGCAATGTGGAAAGTCTGAGAGTGGTTAAAACCCAAGCAGATCTGTTTGGGTTTTAAGCGGAGGTTTGGCCTGCAGTTTATCTCCCTCTAAGACAAAAGGCCCACCGCTAGACACTTCTCCTCTCTCACATGCATCTTCCCTACTACTATCATAAACGGTATAGAATTTCCTATTTTCTTCACCTGAACAATGGTGACTTTCCAAATGTAGCTATATTATGTGACCCAGAATTGACATGTACAAATGTTTTCAGGTTTCTCAAAACATTTTTAATAGTTGTTTTATACATGATTTGTGTTTTAGAACCATGCCACAGGTGTAAGGAACACATAAGGAAAGTGTGTCATGTTTTGCAGGAGATTGACAGGCGGCAGGGCAGCAGTGTAGGATCCACCACACTCTTATGCTTGCGAACAGGGTCGGTACACTCGTCCGATCATGCATCGCAGCACTGGAGGGAATAAAATTGGTAGAATTGCAgtgattaaaaaataataataatttaagcaTTAAACTGTTTTTAATAGTGATGTCATAACCTTCAACAGTCTTCAGTTTGTTTCTTTTATATGTCTGAAATGTCAGAAGTCCAGCTGATAAAACTCTTGTTCCAAGTAA

Function

NR:

description
PCNA-interacting partner-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958469.1 True 2547 mRNA 0.49 12 23341188 23353769

Neighbor

gene id symbol gene type direction distance location
th2 LOC106609447 coding upstream 14174 23314335 ~ 23327014 (+)
LOC110500049 LOC106576281 coding upstream 27312 23295783 ~ 23313876 (+)
ascl1a LOC106576285 coding upstream 120423 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 151532 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 180515 23157083 ~ 23160673 (+)
LOC110500056 ccd53 coding downstream 39758 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 51693 23405462 ~ 23423738 (+)
LOC110500067 LOC106609471 coding downstream 147355 23501124 ~ 23504811 (+)
ada2b LOC106609445 coding downstream 151279 23505048 ~ 23510558 (+)
LOC110500071 LOC106609473 coding downstream 260369 23614138 ~ 23622406 (+)
G1717822 NA non-coding upstream 11131 23329589 ~ 23330057 (+)
G1717800 NA non-coding upstream 66133 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 74502 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 78694 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 79316 23261670 ~ 23261872 (+)
G1717875 NA non-coding downstream 89922 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 132330 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 135573 23489342 ~ 23489551 (+)
G1718603 LOC106609391 non-coding downstream 159983 23513752 ~ 23513999 (+)
G1717785 NA other upstream 84376 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 240379 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 318424 23014617 ~ 23032420 (+)
G1717520 NA other upstream 461265 22820752 ~ 22879923 (+)
G1719225 NA other downstream 719636 24073405 ~ 24074448 (+)
G1719268 NA other downstream 781995 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 924062 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 962869 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2258047 25611816 ~ 25612268 (+)

Expression


Co-expression Network