LOC110500056 (ccd53)


Basic Information

Item Value
gene id LOC110500056
gene name ccd53
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23393527 ~ 23397736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957345.1
CCGGAAGAGCAGAATAATAATGACGTCCGTTTTGGATAACTGTGAAGTCACATGAAGCGTATTACAATTCCATCTCTCTTTTGCAGATTGTCAGTAAAATATTACTATTAAACAAAGTAATCGCGAGTTAACCGATAGTTTGCCAAAACGATAAAAACATGGACGAGGACGGTTTACCGATTGTGGGATCGGGAATAGATCTGACCAAGGTCCCAGCCATACAACAGAGGAGAGTCGTTGCCTATCTCAACCAGTTCATTGTGCACACTGTTCGGTTCCTCAATCGTTTTTCGACAGTTTGCGAAGAGAAACTTGCATGCATATCTCTTCGGATACAGCAGATTGAAACTACCCTCAGCATTTTGGAAGCAAAGCTATCCTCTATTCCTGGTTTGGAGGATGTCAGGGTGGAGGGTGTTGGTCAGCGGCCAGCTATGGAGGTCAACGGTCCAGTCCTGGTCCCAAGTCAACCAGAGACCCCTATAGCTGTGGCTGTGCCATTGCAACCTCCTGAGGCCTCTCCAAACATACCAGACCCAAGAGCAGCGGAGGCAGCAGGAGGATGTAGGATGACTGTGGCCAAGGACCCACGCTATGCCAGATATCTCAAGATGGTGCAAGTGGGTGTTCCAGTTATGGCGATAAAGAATAAAATGGTCCAGGAAGGTTTGGATCCCAACCTGCTTGACACACCCGATGCACCTGTGCCTGATGCCGTCAAAAAGAACACACTAGATCAAGATGATGACGGTGACGATGGCAGTGAGTCATCTTTCAGCGATTGATCTGCTGTCTTAGCCATGAAGCTGCCTATAGGGAACTTCCTTCCCTGTCACCTGTGGCCCAGGCCTTTTCCACTGTGCTGCTGCAGGGGCACAGAAGGACTAGATGCCAGTGTGTGCTTGACAGGCAGAACTACAGTGCTACCAGACAAAGTCCCACTTCTGTGGATGATCTCCAGGGATGCATGGGACTTACAAAAGCAGGCAGATTAAGTATCTGAAATGCATTGTagattgagtgaatgtaaacgaGACAGTTGATAATGTCTGTATCCAGGTCAGCCGCTGATCGTGTGgatgttatatttttgtttccatTTCTTCTCCTGAAACATTTGATTGGTCATGGACAGGGTGTTTCTTTATGTCGTTTAGCAGTAAAACAGATGGAATGACAACAATGGAAAGTATCAACCAGATAATCGATTAGTAATTGATCATTATTTTCTTTAGACTGCACTGGGCCAACATGCCTCTGCCCCTTTGTCAATATCATGTGAACATTCCAATGCCTGAAAGAGattgtggggcagcaggtagcctagcggttgagAGAGTTGGGTCAGTAAGCGGAATGTTGCTGGTTGGAGTCCCCGAGTCGATTAGGTGAAAAATAGTtttgcctttgagcaaggcacttattgcccctgtaagtcgctctggataagtgtctgctaaaagaCAAAAATGTAATTGTGCTTTAgtcacatttgttttattttgacagTGATGTCTGCATGTTACACTTGTGAGAGGGTGATATGTTGTATCTCATGTCCATAATAATTTTTGTGAGAACATTTGATGGGTACTATTTTACACTACAACTGCTGTATGAAGGATGTCCTACAGAAATGTTGAGGACTGTTCTCTGGCCGATTCGTCACTTTTAATTGAGACATTAAGCTGTGAACTGTAACTGTTCACTCCAGGAACAATGTGAAGAACAAATTAAGGAAATTGCACTTTTGGAGAAATATATCATGGAAAAAAAACACCACTAGTTGTGAGCAATGTGTCAATTGCAATGGTAGCGTGTAGACTAAATTAACAGTAATACCTAATGGGAATTCACCTCAATCTTCTAAAATGATGCATCTCAATCCCAGATTTAACCATGTGTGACTAACCATGTTAGCAAGCCTTTCAGGCCCTTGAGTCCCACTATTGTGAAGGCATTATGCCTTGGCCTTTAAGTCCAATAGTTTTATACTACATCCCTTTTTATCCAAATGCTCAGAGATCCAAATCATCTTCACATTGTTTGTAGTCGTCTCTGGACAGAACACTGCAGTGATGGGAGTTTTTCAATTGATTATGAAAGAGGGTAGATGGAGCGGTGTTAGACTGGAAAGCACTTTGTTCACAAGCGCAAGACAAGCAGCATTGATATCTGCGTGTTTACGCCGTTTAGCCTGAAAAATAAAGAACACATTTTGCCT

Function

NR:

description
WASH complex subunit 3

GO:

id name namespace
GO:0071203 WASH complex cellular_component

KEGG:

id description
K18463 CCDC53; WASH complex subunit CCDC53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957345.1 True 2224 mRNA 0.44 6 23393527 23397736

Neighbor

gene id symbol gene type direction distance location
LOC110500052 NA coding upstream 39758 23341188 ~ 23353769 (+)
th2 LOC106609447 coding upstream 66513 23314335 ~ 23327014 (+)
LOC110500049 LOC106576281 coding upstream 79651 23295783 ~ 23313876 (+)
ascl1a LOC106576285 coding upstream 172762 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 203871 23164105 ~ 23189656 (+)
LOC110500058 LOC106576272 coding downstream 7726 23405462 ~ 23423738 (+)
LOC110500067 LOC106609471 coding downstream 103388 23501124 ~ 23504811 (+)
ada2b LOC106609445 coding downstream 107312 23505048 ~ 23510558 (+)
LOC110500071 LOC106609473 coding downstream 216402 23614138 ~ 23622406 (+)
LOC110500073 LOC106609463 coding downstream 243654 23641390 ~ 23644750 (+)
G1717822 NA non-coding upstream 63470 23329589 ~ 23330057 (+)
G1717800 NA non-coding upstream 118472 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 126841 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 131033 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 131655 23261670 ~ 23261872 (+)
G1717875 NA non-coding downstream 45955 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 88363 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 91606 23489342 ~ 23489551 (+)
G1718603 LOC106609391 non-coding downstream 116016 23513752 ~ 23513999 (+)
G1717785 NA other upstream 136715 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 292718 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 370763 23014617 ~ 23032420 (+)
G1717520 NA other upstream 513604 22820752 ~ 22879923 (+)
G1719225 NA other downstream 675669 24073405 ~ 24074448 (+)
G1719268 NA other downstream 738028 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 880095 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 918902 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2214080 25611816 ~ 25612268 (+)

Expression


Co-expression Network