LOC110500058 (LOC106576272)


Basic Information

Item Value
gene id LOC110500058
gene name LOC106576272
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23405462 ~ 23423738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957346.1
CATCACCATAAAGGAAGtgcaatgtttgtttatgtgctTTGACAGTTTTTGCTAGGTGTCATGTGACAAAGAAGACATCTTtcgttttgtagtgtttattttaTATTAACTCCGATATGCTCCTGCGTCTTCGGTGAATGACTGAAGAGATATGGATTGCAAAGGAGAACCATGGTGATAATCAATTCAGTACTGAAACTCTTGCAGAGACAGACCTACACCTGTCTGTCCCATCGCTATGGACTGTACCTCTGCTTTGGAGGGATAGTCCTCATGATCGTCTCTGCCTTCCAGTTTGGAGAAGTGGTGGTAGAGTGGAGTAGGGATCAGTACCATGTACTGTTTGACTCATATAGAGACAATGTAGCTGGGAAATCATTCCAGACTCGGTTGTGCCAGCCCATGCCCATAGATGTGGTGTACACCTGGGTGAATGGCACGGACACAGACCTGATGAAGCAGCTACGCGGTGTGAGAGAGCAGCTGGAGGAAGAGCAGAGAACACTGAGGGCACGGCTGGGGAAGAATGCAAGTGATCCGACTGAATTGCCAAAGGACAGTGTGAAGCCAGAATGTCTGCTGTCCCATTGTATCACAGCGCCCATGCTAGCCCTGGACCCGGCTCTGCCAGGCAACGTCACTCTGAAGGAGCTGCCGTCGCTCTCGCCCTCCTTCTCCGCCGCCAAGCTGCTGCTGCAAGTGGCCaagcccctccacccctccaccacgGTGTCTGTGGTCGTCTTTCACTCTCAGGCTGATGCGGACAAGGCCTACACAGACGCACCCCGTGAGGCCCTGAAGCGCTCTGTCTCTAGATGTTACCTGACAACAGATAAGGAAGCACCAGGTCTGGTCCGCATGCAGAGCCTGGCCTACCTCAGTGGCTTCCCAGCATCCTTCAAGGAGACAGAGCAGCTCAGAGTCAAACTGCCATCTGTTGTCACTGGCAAGATCAAACAGTTCCAGCTGTATACGGAGGCCAGTATCGCCCTGCTCCACCTGAACAGCCCTCAAGACTTTACTGACCTGACCCAGCAGGCCAAAAAGAACCTGACCCTGGACGGGAAAGAGCTGAGCATCAGCGCTGCTTATCTTTTCTGGGACCTGACTGCCATCACACAGtccaagCAGGACGAGGACGTCTCGGCCAGTCGCTTCGAGGACAACGAGGAACTGCGCTATTCGTTGCGCTCGGTGGAGAGACACGCCCCCTGGGTGCGGCACATCTTCATCGTGACCAATGGGCAGATCCCCTCCTGGCTGAACCTGGACAACCCCCGCGTCACCGTGGTAACACACCAGGATGTCTTCCAGAACCACACCCACCTGCCCACCTTCAGTTCCCCTGCCATTGAGACCCACATTCACCGAATCCCAGGCCTGTCTCAGAAGTTCATCTACCTCAACGACGACGTCATGTTTGGGAAGGACGTGTGGCCTGACGACTTCTTCAGTCACTCCAAAGGACAGAAGGTGTACCTCACCTGGCCGGTCCCTAACTGTGCTGAAGGTTGTCCAGGCTCCTGGATCAAAGATGGCTACTGTGACAAGGCCTGTAACAACTCCGCCTGTGACTGGGATGGTGGCGACTGCCTGGGAGCTGGGGGCAGCCGGTTTGGGACCGCTGTGGGCGGAGTGGGTAATCAGCCCTGGCAGTTTGCAGGAGGTCTAGGTGGCATCGGGGGCGTGTCCAGCTGTAACCAAGGCTGTGCCAACTCCTGGCTGGCAGACAAGTTCTGCGACCAGGCCTGCAACGTGCTCTCCTGTGGCTTCGACGTGGGCGACTGTGGACAAGatcaCTTTAACCAGCTCTACAGTGTCACCCTGCTGAAGAACAGGACCTCGTACACCCTACCGGTGGGTGAGACCAGGCCATACTTCAGCTTTGCAGGCGTGGCTCGCCGGGTGACCGAGGCCCAGGTCAGCGACAACCCGGCCGTGCGCCATACCTCGGTGGCCAACAAGTGGAAGACGGTCCACCTGCTCCTCCACTCGGGCCACAATGCCTCGCTGGTCCACTACAACCTCACTGTCCAAAGGGATGACGACAAGGAGTTCTCCCTGACCTTCAGCGTGGCTGTGGACACCCGCCAGCTCCCCCAGCCCAACGTGTCCGTGTCCGACCCACTCCACAAAGACGGATCCAAAGAGGCCAAGCCCACCACCGCCACCGCAGAGCCTGAGGTCCCTTTCGAGGATGTCCCTCTGGAGAAACAAGGTCCTCGAGTCCTGAAGATGCCACCTGGGGAAAATGAGGTGATTGTGGATGTGCCTGCGCTAAATGTGTCCCTGCTACCGGCGGCCTTGCAGAGTGAGCTTCAGAGGCTGCAAGGAAAGCTCCTGTTGGGTGACATCACTATGAAAGGTTATAACCTCACCAAGGCTATACTGCTAGGGCCGTACAAGGCTCTGGCCAATCGGGGCCCCAGGTTAACACCAGCTGACCAGATCAAACCCCAGGACAACCCTTTTAAAGACCTAGTAGGACATGTGGTGAGGAGAGAGGCAGACACACCACAGCTAGTGGAGGCTAACCCAGAAGAACAACACACTCCAGAAAGAAACGGAGCAGAGAAGACCAAAGAGCCAGAGAGAACCGAGGCACCAGAGGAGGTGCCCAAGTCGAGCATCGTTggtgagaaagagaaacagaaagcACAAAAGACTCCAGAAAGCATCCCAGTTCTAGTGGATGGTGAGTTTCCGAAAGCCGCTAAAACCCAGGACACCACCGCCACAGAGAAACCTCCACCGTCCTCCAAGCTGCTGAGCACCCTGGTGGGCAGCATGTCCAAAGCCAAGGGCTCAGAGGGCCAATCGCAGCAGGCAGGGGCTGAGAAGGGACCGAAGGAAGGAGCAGAGGGCGCCCGGGGGGTTCCTGTGGGCCGGAAGCTGCACCACTACACCGCCACAGACAGAGGCTTCCTGCCCTGGGAGAGACGGAAGTACTTCCAGGACCTGCTGGAGGAGGAGGAGCGTCTGGAGGGAGAGCTGGCGTACCAGGCAGACAGCGCCGCCGCTGGCCGGAGGCTGCAGGACACCTTCGCCGACTCTCTCCGCTACGTCAACAAGCTGCTCAACGGCCAGTTTGGCTTCACCTCCCGCAAGGTCCCCGCCCACATGCCCCACATGATCGACAGGCTCATCATGCAGGAGCTCCAGGACATATTCCCACAGGCGTTTGACCTGACGTCGTCTCACCGCGTGCGTCACCCGGAGGACATGCAGTTTTCATTCTCCTACTTCTACTTCCTGATGTCGGCCCTGCAGCCGCTCAACGTCTCGCAGGTGTTCGACGAGATCGACACGGACCACTCCGGCGTTCTCTCTGACCGCGAGATCCGAACGCTGGCCACTCGCATCCATGAGCTCCCCCTCAACTTACAGGATCTGACAGGTCTGGAGCAGCTGCTGATCAACTGTTCTAAGACGCTGCCCACCAACCTGACCCAGCTGCATATCGTTAGCCCTACACAGGAGGCATACTACGAAGCCAGCATGCCTCCCGTCACTAAAGGTCTGGTGGTCCACTGTAAAGCCGTCACGGAGCGCATCCACAAGGCCTTCAAAGACCAGAACAAGTACAAGTTTGAGATAATGGGCGAGGAGGAGATAGCCTTTAAGATGGTGCGGACCAACGTGTCCCATGTGGTGGGCCAGCTGGATGACATCAGGAAGAACCCCAGGAAGTTCATATGTCTAAACGACAACATTGACCACAGCCATAAAGACGCAGGGACTGTTAAGGCGGTGCTGAGGGACTTCTATGAGTCCATGTTCCCCCTGACCTCCCAGTTCGAGTTGCCCAGAGAATACCGCAATCGCTTCCTCCACATGGGAGAGCTCCAGGAATGGCGAGTATATCGGGACAAGCTGAAGTTCTGGACCCACTGTGTATTGGTGACTCTGGTGATCTTTACTGTCGTCTCCTTCTTTGCCGAGCAGCTGATTCTACTGAAGCGCAAGCTGTTTCCCAGACGCCGGGTCAGCAACGATGTCAACCCAGAGCGCGTGTGAAGAACGAGGGAAAGACGTCCTAATCCTCCTCTCTGCATCCACCCTCCTACCTGTCCCCTCCCTCCTTGAGTTCAAATTGAAGGCCATGCAGGGGTAGGTGGTGAGCGAGGAGGGCTATCCCTATATCTCGAAACGTCCTCATCTGGGATTGCATCAGCatggctgaaggagagagggactcTTGTAAACAACGTCAATCATGTGTGGCGGGTAAGATGATTGACGGGCATCACCTGGCTGGGAGACGCTGGAGTGATGTCGTGCCAGTAGAAGAAGCCAGAAACCAGacacttctcttctcttccaccaGGGGTGCCAGAGGGACTTATCGCCCACACGCCACCAACACACCAGGCTGTGGAGAAGGACACTCACTGACTGAGCCAACTATGTGCTAAACTGCtccagtccagtcagtgtgggcaGTGTGATTGATGTACTGTTAAAACCATGATCTGGAAGCGATTGGCGGGAGACACCATCTGTGGTTACAGCACTTTAACCGTGAGAGCTGTAACCTTGTGATGCATTCCAGAGGTTAGGTTGGacactattttattttattttattttttaaaattgaacctttattccACAGAAGGAAAAAAGGGatcggggaggggaggggttaaTCAGAATAACAGGAATTATGCCATTTGACCCGTTTCACCTTGTCACTCCTGGTCAATGTCTACATTCAACATAAGTGCCTTATTTTAAAGAGTGGTGCCAGAAGTATTCCAGTTAGACTGTATGACCTTGTTTACCCATTGTCCCTGCTTGCCTTTTAAATGTCTTGGTTGGATTTGGTATTTACATGTCATAAGTGATTTCTTTCAAAGGCATGGGGGGTTCTGGGTGAAAAATGCCACACCGGTTGTTTTTTAAAATCGTGAATGTTTCACACAGTAGACCACGCAGCGATCAGCCATCCACACAGAATGTGTCCCTGTGGGATACTTTAAGTATAGCTCTGCTAGTGTCTGAAATTCAGATCTCTTCAGCATGCTCCGTAATGTCTGATTGTGTTGTTCAGTGAATGCGTTCCTAATGAATGCCACGGAATGTTAATTTAGCTCCACAAGTGTTCTACTACTGACCCTCAGTTCTTTTCTGATTCTATGGTCTCTCTGTTGAGCCTTCCATGCCTGAATTTGGTAGCTCTCCCCTCCGTTTACAAGCGGTGCATTGTGATGTTAATTATGATAAAATGTGAATGATTGCTAGCAGCAGTAGAACCATGATAATGTTTTGCTGCCCTACTATTACTGAATATTtgtagtgttggtgtactgtGGTATGCAGTGTGCCAGATTACACAGCCTGGTCTCAGTCTGGCACACTCACTAGTATATGTAACCAAACGTAGCAAGATCACTTAAGGCAAATATTAGGAGCGTGAGCATatatctagcaacccaaaggttgtgtgtttggATCTCATCAGACAATTTAAGACATTTGTAGCTACTTTGCTAACCCCAGCTAACGTTAGTGCTAGCTACAAATGAATTACATTCCATACTAAATGGAGTGCCACGGATTTATGTACAGAATACAacatgctctgagaccaggttgaattACAACAATGGGTGGTATGCGTCAAATTCACATTTTTTGTTTAGTCATCACTTTGGCTCATCCCAAAATCAAAAATAAACCTGACTCGCCTAGTCATGAAACTGAA
>TU1968130
CAGGAATTATGCCATTTGACCCGTTTCACCTTGTCACTCCTGGTCAATGTCTACATTCAACATAAGTGCCTTATTTTAAAGAGTGGTGCCAGAAGTATTCCAGTTAGACTGTATGACCTTGTTTACCCATTGTCCCTGCTTGCCTTTTAAATGTCTTGGTTGGATTTGGTATTTACATGTCATAAGTGATTTCTTTCAAAGGCATGGGGGGTTCTGGGTGAAAAATGCCACACCGGTTGTTTTTTAAAATCGTGAATGTTTCACACAGTAGACCACGCAGCGATCAGCCATCCACACAGAATGTGTCCCTGTGGGATACTTTAAGTATAGCTCTGCTAGTGTCTGAAATTCAGATCTCTTCAGCATGCTCCGTAATGTCTGATTGTGTTGTTCAGTGAATGCGTTCCTAATGAATGCCACGGAATGTTAATTTAGCTCCACAAGTGTTCTACTACTGACCCTCAGTTCTTTTCTGATTCTATGGTCTCTCTGTTGAGCCTTCCATGCCTGAATTTGGTAGCTCTCCCCTCCGTTTACAAGCGGTGCATTGTGATGTTAATTATGATAAAATGTGAATGATTGCTAGCAGCAGTAGAACCATGATAATGTTTTGCTGCCCTACTATTACTGAATATTtgtagtgttggtgtactgtGGTATGCAGTGTGCCAGATTACACAGCCTGGTCTCAGTCTGGCACACTCACTAGTATATGTAACCAAACGTAGCAAGATCACTTAAGGCAAATATTAGGAGCGTGAGCATatatctagcaacccaaaggttgtgtgtttggATCTCATCAGACAATTTAAGACATTTGTAGCTACTTTGCTAACCCCAGCTAACGTTAGTGCTAGCTACAAATGAATTACATTCCATACTAAATGGAGTGCCACGGATTTATGTACAGAATACAacatgctctgagaccaggttgaattACAACAATGGGTGGTATGCGTCAAATTCACATTTTTTGTTTAGTCATCACTTTGGCTCATCCCAAAATCAAAAATAAACCTGACTCGCCTAGTCATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957346.1 False 5709 mRNA 0.53 21 23405462 23423738
TU1968130 True 1042 lncRNA 0.41 1 23422690 23423731

Neighbor

gene id symbol gene type direction distance location
LOC110500056 ccd53 coding upstream 7726 23393527 ~ 23397736 (+)
LOC110500052 NA coding upstream 51693 23341188 ~ 23353769 (+)
th2 LOC106609447 coding upstream 78448 23314335 ~ 23327014 (+)
LOC110500049 LOC106576281 coding upstream 91586 23295783 ~ 23313876 (+)
ascl1a LOC106576285 coding upstream 184697 23218944 ~ 23220765 (+)
LOC110500067 LOC106609471 coding downstream 77386 23501124 ~ 23504811 (+)
ada2b LOC106609445 coding downstream 81310 23505048 ~ 23510558 (+)
LOC110500071 LOC106609473 coding downstream 190400 23614138 ~ 23622406 (+)
LOC110500073 LOC106609463 coding downstream 217652 23641390 ~ 23644750 (+)
LOC118942913 NA coding downstream 284724 23708462 ~ 23709161 (+)
G1717822 NA non-coding upstream 75405 23329589 ~ 23330057 (+)
G1717800 NA non-coding upstream 130407 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 138776 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 142968 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 143590 23261670 ~ 23261872 (+)
G1717875 NA non-coding downstream 19953 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 62361 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 65604 23489342 ~ 23489551 (+)
G1718603 LOC106609391 non-coding downstream 90014 23513752 ~ 23513999 (+)
G1718609 NA non-coding downstream 96949 23520687 ~ 23521787 (+)
G1717785 NA other upstream 148650 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 304653 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 382698 23014617 ~ 23032420 (+)
G1717520 NA other upstream 525539 22820752 ~ 22879923 (+)
G1719225 NA other downstream 649667 24073405 ~ 24074448 (+)
G1719268 NA other downstream 712026 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 854093 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 892900 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2188078 25611816 ~ 25612268 (+)

Expression


Co-expression Network