XLOC_036231 (slc66a1)


Basic Information

Item Value
gene id XLOC_036231
gene name slc66a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 10937523 ~ 10949847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070822
CGGCGCGGTAAGATCGACAAACCTCTACTGCCTACCTCAACTGCCGAAAATATACACCACAGTGATGTCGGATGGTTTTGAGCTCGGCGGTGGTGGAAACTTCAGCTCTCTGTGTCCTAATGGTATAGCGTGGATCTGGTATGGACTGGGTGAATGTGCTCAGGATGGCAGAGATGTTGCCAGTGTGGTTCTCGGACTCCTGTCAATTGTCTGCTTCATGGTGTCCTCAATACCGCAATACTACAGTTCCTGCAAGACAGGAAACATGGACAGCGCTCTGTCTATCTGGTTCCTCTTATTCTGGCTGGCGGGTGATTCGTGCAATCTTATAGGGTCATTTTTGGCTGATCAACTTCCTCTACAGAAATATACAGCTGTCTACTACGTCGTGGCAGACCTGTTAATGCTGGCCATGTACATGTACTATAAACTAAAGAATAAAAGATCTTCAGACCGTGCACTGCTAAATGCACTCAGCGTGCTGTGTCTTTTAGGAATGACATCTTCACTTCTCAGTATCCCTCATTGGTCTCTTGAGGATCAAATGCCCTCAGGATTCAGAGGTCGAGCACTACTGGCCCTGGAGGAGGACAACGGTGCAGTGCAGCCATTCAAAACAAGAGAGATTATAGGCTTTGTTATCGGCTCTATTTCTTCAGTACTGTATTTATGCTCCAGACTGCCACAGATTTACACCAATTTTCAGAGGAAGTCAACAGAGGGCTTGTCGTATTTCCTGTTTGCTCTGGTGATTCTGGGAAACACCACATACGGCGTGAGTGTTCTGCTGAAGAACCCAGATCCAGGACAGGGAGAGGCCAGTTACATGGTTCACCACCTGCCCTGGCTCATCGGCAGCCTCGGAACTCTCTCACTAGACCTGGTCATATCTGTGCAGTTTATGATGTACAGGAAATCTCCACAGGTTTCTGCAGATACAGATGAAGAAAGGGCTGCGCTTCTGCAAAACTGAACTACTCATTCCTGCTGTGACTGCATTAAAAGCTGATGGATGGTTTTTGAGCATCACATTtcacaaaaatgcacaaaaaacttgagttttatttacattttatatcaaTAGGTTTTATTATAGCGAGCAGCATCAGtgattctaattattatttttgtctcataGTAGTTGctgttcttaaagggatagttcacccaaacacaaataaacaaacttttattcatcgttcacttgttcaaaacctatttgacgGTTTCTagctttaaacacaaaagaagatgttttgaagaatgctggcactCATggactttgattttttttctctactATTGAAgttcaaccagcattcttcaaaatatcttcttttgtgttcaacagaataaaaaaactcataaaggtttaaaactacatgagggagagtaaatgaatgGAAGTTTAAAactttgcgtgaactatccctttaattgttaCCAAAGGGATCATTTACACACTTGTACTGTACTTCAGAACTcacaaaagcttttatttttattttttcaacgcATGCAATCTTGTAAATTTGATGTACAGTGAATTAAGTGCTGCATACAGCAGACTTGACTGAGGAAGACTTGTGAAAACGGGCTTCTTCAGTCTGTGTACTGTAATCTATTAAGTATCAGTTGGTTTTGTTAAGATGTTTTTAATCTTTATATGGTGGCCTTGATTATGCACTGCACCTGACCGTCAGTTTGTAACTTCTTTTATTGAAGTTCTTATTTTGAAGTCTTATTTGACTTTGTGCCTGTTTTCTTTTCTGTATCACAACACACACTAAAGATCTTTGTTTTCTGGGGCCAAACAGGC
>TCONS_00070823
ATGGACAGCGCTCTGTCTATCTGGTTCCTCTTATTCTGGCTGGCGGGTGATTCGTGCAATCTTATAGGGTCATTTTTGGCTGATCAACTTCCTCTACAGAAATATACAGCTGTCTACTACGTCGTGGCAGACCTGTTAATGCTGGCCATGTACATGTACTATAAACTAAAGAATAAAAGATCTTCAGACCGTGCACTGCTAAATGCACTCAGCGTGCTGTGTCTTTTAGGAATGACATCTTCACTTCTCAGTATCCCTCATTGGTCTCTTGAGGATCAAATGCCCTCAGGATTCAGAGGTCGAGCACTACTGGCCCTGGAGGAGGACAACGGTGCAGTGCAGCCATTCAAAACAAGAGAGATTATAGGCTTTGTTATCGGCTCTATTTCTTCAGTACTGTATTTATGCTCCAGACTGCCACAGATTTACACCAATattaagGAAGTCAACAGAGGGCTTGTCGTATTTCCTGTTTGCTCTGGTGATTCTGGGAAACACCACATACGGCGTGAGTGTTCTGCTGAAGAACCCAGATCCAGGACAGGGAGAGGCCAGTTACATGGTTCACCACCTGCCCTGGCTCATCGGCAGCCTCGGAACTCTCTCACTAGACCTGGTCATATCTGTGCAGTTTATGATGTACAGGAAATCTCCACAGGTTTCTGCAGATACAGATGA

Function

symbol description
slc66a1 Predicted to enable L-lysine transmembrane transporter activity and arginine transmembrane transporter activity. Predicted to be located in membrane. Predicted to be active in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human SLC66A1 (solute carrier family 66 member 1).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015174 basic amino acid transmembrane transporter activity molecular_function
GO:0015181 arginine transmembrane transporter activity molecular_function
GO:0015189 L-lysine transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050306-4 Predicted to enable L-lysine transmembrane transporter activity and arginine transmembrane transporter activity. Predicted to be located in membrane. Predicted to be active in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human SLC66A1 (solute carrier family 66 member 1).

Ensembl:

ensembl_id ENSDARG00000043624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070822 False 1819 mRNA 0.41 8 10937523 10949847
TCONS_00070823 True 678 mRNA 0.47 7 10938397 10947205

Neighbor

gene id symbol gene type direction distance location
XLOC_036230 nr1h5 coding downstream 5317 10903325 ~ 10932206 (-)
XLOC_036229 FO834835.1 coding downstream 497679 10439725 ~ 10439844 (-)
XLOC_036228 NA coding downstream 610467 10323325 ~ 10327056 (-)
XLOC_036227 CT573497.2 coding downstream 885390 10052019 ~ 10052133 (-)
XLOC_036226 si:dkey-8e10.3 coding downstream 889464 10033326 ~ 10048059 (-)
XLOC_036232 trim33 coding upstream 6621 10956468 ~ 11004739 (-)
XLOC_036233 bcas2 coding upstream 58916 11008763 ~ 11016766 (-)
XLOC_036234 dennd2c coding upstream 69204 11019051 ~ 11077230 (-)
XLOC_036235 ampd1 coding upstream 130724 11080571 ~ 11112058 (-)
XLOC_036236 nras coding upstream 164907 11114754 ~ 11131695 (-)
XLOC_036222 NA non-coding downstream 1905194 9029054 ~ 9032329 (-)
XLOC_036221 NA non-coding downstream 1969904 8957581 ~ 8967619 (-)
XLOC_036247 NA non-coding upstream 1079626 12029473 ~ 12125374 (-)
XLOC_036251 NA non-coding upstream 1501604 12451451 ~ 12669412 (-)
XLOC_036252 CU639468.2 non-coding upstream 1662925 12612772 ~ 12612888 (-)
XLOC_036253 NA non-coding upstream 1736844 12686691 ~ 12710224 (-)
XLOC_036261 BX119975.1 non-coding upstream 2289126 13238973 ~ 13239092 (-)

Expression


Co-expression Network