LOC110500079 (LOC106576259)


Basic Information

Item Value
gene id LOC110500079
gene name LOC106576259
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23733010 ~ 23791315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577232.2
tctgtatgatAATAAGTTAGTGCGCACGGCGTGCATGCAGTCAGTCTCTGATGGAACTCAGTGGAATACAGACTGGTGCTGCAACTGAGGCAGAAGTCGGGACAATTTCACTTCAATTTTGAGTTTATTACTTACATGCTATTTTATTTTCTCTCACTTCAAGGGTGATCACACTCCGTTAAGACTGGGAAACAATACTGACAGTGTATTCACACGTTGGACAATACATAGTCTGACTATCAGAAAGCATAAGAGGAAGAGAAAGCACTGAATAATTTTCTGTGCTCTATCAATCTACAGTCAAGTATTTGTTCCAAGAAAACGAGCAGTGTCGCGTTTGTGTGCGCGTGGATTTAATTTTCGGATATCTATCACTGTGTCAAGCAATATTGGACCAGTCCTACACAAATCTAGGCTGTGCTGATGTCGCCCGCGGACAGACGCACCGCTGGATTGTAGCAGCGCCGATGGATTAAAGGGCAACCTTAAAACATTTGGAGGGCGCGAAGGTAGCGGGCAGCAGGAtgagtgagagacacacacagcaaggaagTAAAGGGGTTCTACTTCTAATGGTCTGCATGGTGACTCTGCTGGAGATGGCTAGACCAACAGAAGGTCACAGAGTGCATCAAGTCAGAACCGGCACTTGCGAGGTTGTGGCTTTGCATCGATGCTGCAACAAGAACAAAATAGAAGAACGCTCCCAAACGGTTAAATGCTCCTGCTTCCCTGGACAAGTGGCCGGGACGACCAGAGCTGCCCCGTCTTGTGTAGATGCCTCTATAGTGGCGCAGAAGTGGTGGTGTCAGATGCATCCATGTCTGGATGGGGAGGAGTGTAAAGTCCTCCCAGATCTGAAGGGATGGAGCTGCGCCACGGGGAACAAGATAAAGACTACCAAGATCTCGTCGGACAGGGATCAGCTCTGGTAACCCTTGATGCCACGGGAACCGAATCAAGgtgGATCAATAAATGTTACTGGGTCTTTACCTGTGGAATACCATCATGGACTCAAGAACATTGCAGTGACCCTTTTTGTAAATAGAGACTCCCTCTATTGGAGACTATACTATGAATCTTCTGGAAGACTTACAAGCACAGGGTAACAAAGGACATCTGGATGAGACGAGAAGAGTGGACACTACTAAATGATTGCTCAGTAGAGGGGACCTTTATTTTGAAAAGCCCAGACATGACTACCACCACATTGGACATTAGGATGTCTTTTTATTCTCTAACATTGTTCTGCTTATAGTGGATTACAATGGTGAATTTtgccaaaacattaaaaacattatttggaAAGTGATAGTTTTTCTTAgggaaatagttttttccccctcagaatGCATTGTGCATCATTACTGTAACAGAGTATCATCAATATCAAGAATTTCCCCCATGAATATTAGGGACGAGTCAAATTCGATCCAGTTTTTATCAATGAAATGATGGTCAGAAAATGGTAAGAAGAAGAAATATAAAATTGGTGAACCTTATTGTATTGAGCCAATCATTGAACATGCAGGGTGATTTTCAAAGGAGCACAAAAAAGGCACAGGTACTGGAATTGGCGTATGTACACCTCCATATTTTTTAAATGGGTGGCCATCATTGTGGGTGGCCATTCTCGATGGTGCTGCGCGCAGGGAACATGGCTTATTCAAATGAGAGTTGCAATCAATGGCCAACCAATGACAGTTGAGAGAATGTGATGTATCCAAGGACAAATTGATGTAGACTACTGATCTATAAGGCAGACTACAATGTAGGATTTCCACCACCAAAACTGAAAACTGAAGGTCATGTTTGATTTGCATGTTTTATTCCAAGGGCATCATCTTTCATTTCGTCTAGAGCAGATTGGGGCACTAGGTGCATACTTTTGAAAATGTACACATGAATGAAAGTGGTGCACAAATGAGTTACCCCTAGTGTGCTTAGCGTTTGCTTATGTTCTTTTGAAAATCCTCCTATCAACTGCCAGCTGATCCAGTTAGTTTGTCTATGTTGCACAATGCTGAAGCTCAGATTCGAATGTCCATGTAATGTTTATGTTAATGTATGCAAGCTAAAATGCATTCATTCTACAATTCTGGCTATAGTCCATGGGGTTGGTAGGGGCCGGTTAAGTGTTAAGTACTTTTTAAAATTACTTTCTGATTCGCTGATAACTTTTCAACAGGTATCTCTGACGCTTCCTTCGTCTGTGCAAGTGATAACATCTTCGAATAATAAACTGTGGTTGTGTCTTAACTTAA
>TU1969149
AGTGGAATACAGACTGGTGCTGCAACTGAGGCAGAAGTCGGGACAATTTCACTTCAATTTTGAGTTTATTACTTACATGCTATTTTATTTTCTCTCACTTCAAGGGTGATCACACTCCGTTAAGACTGGGAAACAATACTGACAGTGTATTCACACGTTGGACAATACATAGTCTGACTATCAGAAAGCATAAGAGGAAGAGAAAGCACTGAATAATTTTCTGTGCTCTATCAATCTACAGTCAAGTATTTGTTCCAAGAAAACGAGCAGTGTCGCGTTTGTGTGCGCGTGGATTTAATTTTCGGATATCTATCACTGTGTCAAGCAATATTGGACCAGTCCTACACAAATCTAGGCTGTGCTGATGTCGCCCGCGGACAGACGCACCGCTGGATTGTAGCAGCGCCGATGGATTAAAGGGCAACCTTAAAACATTTGGAGGGCGCGAAGGTAGCGGGCAGCAGTGCATCAAGTCAGAACCGGCACTTGCGAGGTTGTGGCTTTGCATCGATGCTGCAACAAGAACAAAATAGAAGAACGCTCCCAAACGGTTAAATGCTCCTGCTTCCCTGGACAAGTGGCCGGGACGACCAGAGCTGCCCCGTCTTGTGTAGATGCCTCTATAGTGGCGCAGAAGTGGTGGTGTCAGATGCATCCATGTCTGGATGGGGAGGAGTGTAAAGTCCTCCCAGATCTGAAGGGATGGAGCTGCGCCACGGGGAACAAGATAAAGACTACCAAGATCTCGTCGGACAGGGATCAGCTCTGGTAACCCTTGATGCCACGGGAACCGAATCAAGgtgGATCAATAAATGTTACTGGGTCTTTACCTGTGGAATACCATCATGGACTCAAGAACATTGCAGTGACCCTTTTTGTAAATAGAGACTCCCTCTATTGGAGACTATACTATGAATCTTCTGGAAGACTTACAAGCACAGGGTAACAAAGGACATCTGGATGAGACGAGAAGAGTGGACACTACTAAATGATTGCTCAGTAGAGGGGACCTTTATTTTGAAAAGCCCAGACATGACTACCACCACATTGGACATTAGGATGTCTTTTTATTCTCTAACATTGTTCTGCTTATAGTGGATTACAATGGTGAATTTtgccaaaacattaaaaacattatttggaAAGTGATAGTTTTTCTTAgggaaatagttttttccccctcagaatGCATTGTGCATCATTACTGTAACAGAGTATCATCAATATCAAGAATTTCCCCCATGAATATTAGGGACGAGTCAAATTCGATCCAGTTTTTATCAATGAAATGATGGTCAGAAAATGGTAAGAAGAAGAAATATAAAATTGGTGAACCTTATTGTATTGAGCCAATCATTGAACATGCAGGGTGATTTTCAAAGGAGCACAAAAAAGGCACAGGTACTGGAATTGGCGTATGTACACCTCCATATTTTTTAAATGGGTGGCCATCATTGTGGGTGGCCATTCTCGATGGTGCTGCGCGCAGGGAACATGGCTTATTCAAATGAGAGTTGCAATCAATGGCCAACCAATGACAGTTGAGAGAATGTGATGTATCCAAGGACAAATTGATGTAGACTACTGATCTATAAGGCAGACTACAATGTAGGATTTCCACCACCAAAACTGAAAACTGAAGGTCATGTTTGATTTGCATGTTTTATTCCAAGGGCATCATCTTTCATTTCGTCTAGAGCAGATTGGGGCACTAGGTGCATACTTTTGAAAATGTACACATGAATGAAAGTGGTGCACAAATGAGTTACCCCTAGTGTGCTTAGCGTTTGCTTATGTTCTTTTGAAAATCCTCCTATCAACTGCCAGCTGATCCAGTTAGTTTGTCTATGTTGCACAATGCTGAAGCTCAGATTCGAATGTCCATGTAATGTTTATGTTAATGTATGCAAGCTAAAATGCATTCATTCTACAATTCTGGCTATAGTCCATGGGGTTGGTAGGGGCCGGTTAAGTGTTAAGTACTTTTTAAAATTACTTTCTGATTCGCTGATAACTTTTCAACAGGTATCTCTGACGCTTCCTTCGTCTGTGCAAGTGATAACATCTTCGAATAATAAACTGTGGTTGTGTCTTAACTTAATGCTTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577232.2 False 2264 mRNA 0.43 6 23733010 23791307
TU1969149 True 2109 lncRNA 0.42 5 23733069 23791315

Neighbor

gene id symbol gene type direction distance location
LOC110500077 etv6 coding upstream 958 23710269 ~ 23732052 (+)
LOC118942913 NA coding upstream 23849 23708462 ~ 23709161 (+)
LOC110500073 LOC106609463 coding upstream 88260 23641390 ~ 23644750 (+)
LOC110500071 LOC106609473 coding upstream 110604 23614138 ~ 23622406 (+)
ada2b LOC106609445 coding upstream 222452 23505048 ~ 23510558 (+)
LOC118943007 NA coding downstream 105661 23896968 ~ 23903687 (+)
LOC110500082 LOC106609433 coding downstream 118698 23910005 ~ 23936559 (+)
rpap3 LOC106609438 coding downstream 185366 23976673 ~ 23985903 (+)
LOC110500093 LOC106609369 coding downstream 355736 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 384872 24176179 ~ 24190708 (+)
G1718742 NA non-coding upstream 99912 23632899 ~ 23633098 (+)
G1718739 NA non-coding upstream 104939 23627841 ~ 23628071 (+)
G1718734 NA non-coding upstream 120172 23612564 ~ 23612838 (+)
G1718914 NA non-coding downstream 17904 23809211 ~ 23809507 (+)
G1718963 NA non-coding downstream 52651 23843958 ~ 23844275 (+)
G1718964 NA non-coding downstream 53104 23844411 ~ 23844769 (+)
G1718965 NA non-coding downstream 53504 23844811 ~ 23845088 (+)
G1718966 NA non-coding downstream 55826 23847133 ~ 23847769 (+)
G1717785 NA other upstream 476198 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 632201 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 710246 23014617 ~ 23032420 (+)
G1717520 NA other upstream 853087 22820752 ~ 22879923 (+)
G1719225 NA other downstream 282098 24073405 ~ 24074448 (+)
G1719268 NA other downstream 344457 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 486524 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 525331 24315919 ~ 24321712 (+)
G1720836 NA other downstream 1820509 25611816 ~ 25612268 (+)

Expression


Co-expression Network