LOC118943007


Basic Information

Item Value
gene id LOC118943007
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23896968 ~ 23903687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038743.1
GGatctggaacacgctgtcgtacacgtcgatcccaaacaggctcaattggtgacatgtctgAGGCCTGGAACCAGTTTGTCTGTCTGCCAGCCTGACCCCTGCTCTTTGATCAGAGAGCTGGCTGTGCTGAAGGAGAAATTGGGAACCACGGACCAGAAACTGGGAGCtgtggaggagatgaggagtAGGAACAAAGTTCAAGAGGAAGAACTGAAGACTTTGAAGGAGGGTTTAAAGTGTCTGGTTCTGGGCGTTTGGACCGATCTCCACCGACATCCATTTACAGTAGAAGCGAGTATTCTCCAACATTGGCAGTGGCTACAACTCTGCTAAAGGTGTCTTCACAGCCATGGTGAAGGGGGTGTATTTCTTCCATTACTCCAGcctttcccaaactctgtcctggggAACCCAAGTGGTGTACGCTTAGTTTTTTGCCAgagtactacacagctgattttaAATAatgaactcatcatcaagctttgattatttgaatcagctgtgtagtactagggcaaaaaaactaaatgtgcaccCCTTCGTGTCCCCCACCCCTTCgtgtccccaggaccgagtttgggaaacacagCGTTACACCATGTACAACCAAGGAAGTTTACCATCTGCCATGTCTACGATGAAGAAAGGCTACCTGCGTCTACCTGGTAAAGCACCAAAGATCGTGACAATGACAGTAACACAGCCGTAGTGAAGCTGGAGGTGGGAGCCAGTGTTTACGTACAGCTATGGGCTACCAGGGTTGTCTTCAATGATACTGGAATCGACAATGGTAATGCAGGTTTTAATCAAATACCTATTAAACAGTCATACTATCATAATGTATTTGTTTGTTGCTCTGCTGCATTTAGTCTTGGATGTCAGGATCTTACTACCCTTCACCAAAATATTTATTTGGGGGTTAATTTTAGATCGTTTCTTCTTGTCATACTGTTAATGTTAAAAGTATTCACATAAATAAATGAACAATAAAATGGATAATTAAAGGTG

Function

NR:

description
PREDICTED: complement C1q-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038743.1 True 1012 mRNA 0.44 2 23896968 23903687

Neighbor

gene id symbol gene type direction distance location
LOC110500079 LOC106576259 coding upstream 105661 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 164916 23710269 ~ 23732052 (+)
LOC118942913 NA coding upstream 187807 23708462 ~ 23709161 (+)
LOC110500073 LOC106609463 coding upstream 252218 23641390 ~ 23644750 (+)
LOC110500071 LOC106609473 coding upstream 274562 23614138 ~ 23622406 (+)
LOC110500082 LOC106609433 coding downstream 6318 23910005 ~ 23936559 (+)
rpap3 LOC106609438 coding downstream 72986 23976673 ~ 23985903 (+)
LOC110500093 LOC106609369 coding downstream 243356 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 272492 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 374110 24277797 ~ 24294858 (+)
G1718998 NA non-coding upstream 14590 23882164 ~ 23882378 (+)
G1718966 NA non-coding upstream 49199 23847133 ~ 23847769 (+)
G1718965 NA non-coding upstream 51880 23844811 ~ 23845088 (+)
G1718964 NA non-coding upstream 52199 23844411 ~ 23844769 (+)
G1718963 NA non-coding upstream 52693 23843958 ~ 23844275 (+)
G1719102 NA non-coding downstream 35680 23939367 ~ 23939686 (+)
G1719112 NA non-coding downstream 44009 23947696 ~ 23952073 (+)
G1719117 NA non-coding downstream 48888 23952575 ~ 23952897 (+)
G1719121 NA non-coding downstream 51993 23955680 ~ 23956003 (+)
G1719122 NA non-coding downstream 53824 23957511 ~ 23958195 (+)
G1717785 NA other upstream 640156 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 796159 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 874204 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1017045 22820752 ~ 22879923 (+)
G1719225 NA other downstream 169718 24073405 ~ 24074448 (+)
G1719268 NA other downstream 232077 24135764 ~ 24136323 (+)
LOC110500097 LOC106576231 other downstream 412951 24315919 ~ 24321712 (+)
G1720836 NA other downstream 1708129 25611816 ~ 25612268 (+)

Expression


Co-expression Network