LOC110500082 (LOC106609433)


Basic Information

Item Value
gene id LOC110500082
gene name LOC106609433
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23910005 ~ 23936559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957362.1
ACCAATAGAGGGGCAGGCTGTTGGGAGCCTTGGAAGTAGTGGCTGCTACGAGGGCAAAGCAAAAAGAATGCTAGTACAGGCAAAAACTTTTACAGAGGTATGGAGAAGTTTAGGTCCCGTAAAAATATTTTACATGTTCGTAGTGTCAAAGGAATACGGTCGAGGAATTGGATTTAAGGACTAAACCGGACAACATTGTCCTTGGGTTGTAACTTTTACTACATTGTATTTTCTCGCGCTTTTCTCTAAAACTTGGGTAGGACTTCAGTGTGGCTAAAATGTCCGCATCTATGCAGCCTCTCAACGCTGTGATGTATGCGGTCGTTTTCTTACTGTTTTTCCGAATAGAACTTATACTTGGATATGATGAAAACACAAGGACGTGTCCGTCTCCATGCACATGTTTTGGAGACCTGTTGGACTGCAGTCGGTTGAAAAGGCGTGGAATTCCTGAAAATCTTCCCGAATGGACCGTACAATTGGACCTGAGCCATAATAAATTGCAGTCGCTCGACAGCACTGTGTTTAGGAAACTGCGGTACCTAAGTGAGATAAAGCTAAACAACAATGAATTTGAGACGGTACCTGATTTGGGCCCTCATGCGGCAAACATCACCACCCTCATTCTAGCAAACAACAGGATCACAAAGATCTCTCTGGAGCAGCTGAGGCCCCTGCAACGCCTGGAGACCCTGGACCTCAGCAATAACAGCATAGTGGATATCAAGGCTGACTCCTTCCCTGCGCTGCCTCTCAAGAACCTTATCATGAACAACAATCGCATTTCCACCTTGGAAACGGGCTGTTTTGTCAACCTGTCCAGCACTCTGCAGGTCCTCAGGCTCAACCGCAACCGCCTCTCAACCATCCCTGCCAAGATCTTCCAGCTCCCCAACCTCCAGCACCTGGAGCTGAACAGGAACCGGGTGCGCAGGGTGGAAGGCCTGACGTTCCACGGTCTGCACGCGCTGCGCTCACTGAAGATCCAGAGGAACGGTATCAGCCGCCTGATGGATGGAGCCTTCTGGGGCCTCAGTAACATGGAGGTCCTGCAGCTGGACTACAACAACCTGACGGAGGTGAGTAAGGGCTGGCTGTACGGCCTGCTGACTCTGCAGCAGCTCCACCTGGGCCACAACGCCATCAGCCGGATCCGGCCTGACGCCTGGGAGTTCTGCCAGAAACTCAGCGAGCTGGACATCTCGTCCAACCACTTGACAAGACTGGAGGAGTCCAGCTTTGTGGGCCTCAGCCTGCTTGACGAACTCCACATCGGGAACAACCGTGTGAGCTTCATCGCAGACGGAGCCTTCCGAGGACTCTCCCACCTACAGATGCTAGATCTGCAGAACAACGAAATCTCCTGGACCATTGAAGATATGAACGGACCATTTTCTGCTCTGGACAAACTGAGGAAACTGTTCCTTCAAGGAAATCAAATCCGCTCGGTGACCAAGAAATCGTTCTCTGGTCTGGACACACTGGCGCACCTaGATTTGAGTAACAATGCGATCATGTCAGTCCAAGGGAATGCCTTTGTGCAGATGAAGAAGCTTGAGGAACTGCACCTGAACACATCCAGCCTGCTGTGTGACTGCCAGCTCAAGTGGTTTCCTCTGTGGGTGGCGGAGCAGACCTTCCTGCCCTACGTGAACGCCAGCTGTGCCCATCCCCTGATGCTGAAGGGCAAGAGCGTGTTCACCGTCAGACAGGAGGACTTTGTGTGTGACGACTTCCCCAAACCTCAGATCACGGTGCAACCTGAGACCCAGTCGGCCATCAAAAGCGCCAACGTCACCTTCGTGTGCTCGGCGGCCAGCTCCAGCGACTCACCCATGACCTTTGCCTGGAAGAAGGACAATGAGGTCCTGAATGACGCTGAAATCCACAACCAGGCACACCTCAGAGCCCAGGGGGGAGGCCAAGGCCGTGAAACAGAGGTTACAGAGTACACCACCACACTGCAGCTACGCAGTGTAGAGTTCACCAGCGAGGGGAAGTACCAGTGTGTCATCTCAAACCACTTTGGTTCCTCCTACTCCACCAAGGCCAAGCTCACTGTCAACATGCTTCCGTCCTTCACCAAGATGCCCATGGACCTGAGCATCCGGGCCGGTGCCACGGCCAGACTGGAGTGTGCCTCCGTGGGTCACCCGTCTCCGCAGATCGCCTGGCAGAAAGACGGCGGCACGGACTTCCCCGCTGCCCGGGAGCGCCGTATGCATGTGATGCCTGAGGACGATGTGTTCTTCATCGTGGATGTGAAGACAGAGGACATCGGGTTGTACAGCTGCACCGCCCAGAACACCGCCGGAGCCATATCAGCTAACGCTACGCTAACTGTGCTAGAAACTCCCTCCTTCCTGCGCCCTCTCATGGACCGCACCGTGGCCAAAGGGGAGACTGCGGTCCTCCAGTGCATTGCCGGTGGCAGCCCTTCCCCCAGGCTCAACTGGACCAAAGACGACAACCCCCTTGTGGTCACAGAGCGCCACTTCTTTGCCGCCGGCAACCAGCTGCTCATAATCGTGGACGCAGCGGAGGACGATGCCGGGATGTACACGTGCGAGATGTCCAACACGCTGGGCACCCAGCGGGGCAACGTGCGCCTAGCCGTACTGCCCAACCCCAACTGTGACGTGGGGGTGGGCGCCTCGGGAGGCGTAGGCTCCGACGAGGACGGCTGGACCACGGTGGGCATCGTCATCATCGCGGTGGTGTGCTGCGTGGTGGGCACCTCGCTGGTCTGGGTGGTCATCATCTACCATACGCGTCGGCGCAACGAGGACTGCAGCGTCACCAACACAGACGAGACCAACCTGCCTGCAGACATCCCCAGCTACCTGTCCTCTCAGGGCACGCTGGCCGACAGACAAGACGGCTATATCCCCTCAGAGAGTGGCAGTGGCAACCACCAGTTCATGGCTTCCTCCATGAGTGGATTCTACATGCAGCCTAAAGACATGAATGGTCTGTGTCAGCTAGACACAGGAAGTGAAGCGGACATGGAGGCGGCCATAGATCCCCTGCTCTGCCattaccaaggacccatcagcTCTCTCCTCAGGAGAGGCAACATGTACACCGGAGAACCCTCAGAGGCTTTCACAGGCTGTGCTATGGACCAGCGGCCCATCTGCATAGACTCCTACAGTGGCAGCCTGACCAGCTCCAAGAGGAGAGACTACTATCCATGTGGCGGGGCCCTCCAGGACCCCTTTGACCACGGGAGCCCCAGTGTGCTGATGCAGATGCCCAACAGCAGCAGCTTCCACGGGCCACCCCACCTACAGGGCGAGGGCCCCCCCTCCATGGACGAGGGAGATGGAAGCGAGTACGGCCGACCTCGGGAGACAAGGCTCTCCTCCTCCAATACTTTCATGGGAACGTTTGGGAAAGCCCCCTGGAGGCCTCAACAGGAATTCTATCCCGGATTTGGACCACCGCCACTGGCCCTGCACAACAGCATGATGCTACACGAGAATCCCTACGCAGCCCTGGACAAAGACTCGGAACGCGAGGAAGACAAGAACAGCGTGCAGTCAAAGAATTCTAAATCGGAATCGGAAAAGAGAGGCAATAATATCTATGAACAACCATATGATCTCAACAGGACTGCTACTAGTCAGCAAGGTCGAGCACATAGCTGAATATGTGCGTTCAAACAAACTGACATTCCTTTGAGTTTTTCTTCGTTATGATGGTGGCCCCCAAAAAATACTACCTCAGTGAATGGACACTTTCTCAGTGATGGACACTGCAAATGTGCAACGCTTGAATGTAAAAGGATAATGCATTGTGCCTACAAAATGCTGAAAAATTATATGAGGAGATATTAACAGTGAGGACTGTTCTTTTTTTAAGAAAGAAAAATGGGAAACATCTTCAATTGAAGATAGATATTGAATATATATACGTTTTTATACAAAGTTTATTATATTTTGTAAATTAAGTGTAAAAGTAGAATCCATTATTTTTGCTGTACTTTTTCCTGTAAATTTGTATTTTGTGTTGTGCGACCGACCATGCCTGTTCAGTTATTCTAGCTTTTGTTTTGCTTTGAGTTAAGCACCCCTTTGCACATACCTATACATAATAAAACACCATAACATGTGCTGCTACGTACATTAAAAGTA

Function

NR:

description
leucine-rich repeats and immunoglobulin-like domains protein 3

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957362.1 True 4136 mRNA 0.53 19 23910005 23936559

Neighbor

gene id symbol gene type direction distance location
LOC118943007 NA coding upstream 6318 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 118698 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 177953 23710269 ~ 23732052 (+)
LOC118942913 NA coding upstream 200844 23708462 ~ 23709161 (+)
LOC110500073 LOC106609463 coding upstream 265255 23641390 ~ 23644750 (+)
rpap3 LOC106609438 coding downstream 40114 23976673 ~ 23985903 (+)
LOC110500093 LOC106609369 coding downstream 210484 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 239620 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 341238 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 379360 24315919 ~ 24321712 (+)
G1718998 NA non-coding upstream 27627 23882164 ~ 23882378 (+)
G1718966 NA non-coding upstream 62236 23847133 ~ 23847769 (+)
G1718965 NA non-coding upstream 64917 23844811 ~ 23845088 (+)
G1718964 NA non-coding upstream 65236 23844411 ~ 23844769 (+)
G1718963 NA non-coding upstream 65730 23843958 ~ 23844275 (+)
G1719102 NA non-coding downstream 2808 23939367 ~ 23939686 (+)
G1719112 NA non-coding downstream 11137 23947696 ~ 23952073 (+)
G1719117 NA non-coding downstream 16016 23952575 ~ 23952897 (+)
G1719121 NA non-coding downstream 19121 23955680 ~ 23956003 (+)
G1719122 NA non-coding downstream 20952 23957511 ~ 23958195 (+)
G1717785 NA other upstream 653193 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 809196 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 887241 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1030082 22820752 ~ 22879923 (+)
G1719225 NA other downstream 136846 24073405 ~ 24074448 (+)
G1719268 NA other downstream 199205 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1675257 25611816 ~ 25612268 (+)

Expression


Co-expression Network