rpap3 (LOC106609438)


Basic Information

Item Value
gene id rpap3
gene name LOC106609438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23976673 ~ 23985903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577240.2
TCGATGGTGTTTGGAAGAGCGCGCTTATTTGAAATGGAAAAGCGCCGCGGTAACTTTTGATAAAGAAGAACATCAAGATGAAGCAGCTGCTTTATAAGATGAGAGCTACATCCCGAAGAGTTCGTGCTGATTGTAGGCATGTCTGAAAACAAAGCCATTGAACTCCAACTGCAAATGCGACAAAATGCAGAGGACCTGCATAACTTCATGAAAGATCTTGACAGCTGGGAAACTGACATAAAGAAGAAGGATGAACAACTAAGAAGTGGGAGTGTTGGCGAGTCTCAAAAAAGCCTCCCACCAGTGCGAAACAAGGACTacaaaaagaagagagagaaaaagaaggcATCAGACAACAATGCAAAGACTGAAACAAAACAAGCACCCAGGATAAAGTCTTATGACTATCAGTCATGGGACAAATTTGATGTGGACAAGGTTTTGGAGTCCATGGATAAAGAGGACAGCGCTGCTGAGTCCAATGACTCTGAATCTGAGGATTCTGGGGTTCCTGCTACTGACCAAGACACAGCTCTTGCTGAGAAGGAGAAAGGTAATCAGCTGTTTAAAGAAGGGAAGTATGATGATGCCATTGAGTGTTACACCAGAGGCATGGGCGCAGACCCTTATAACCCCGTTCTGCCTACAAACCGAGCTGCCTGCTTCTTCAGACTCAAAAAGTTTGCTGTTGCAGAGTCTGACTGCAACTTGTCCATCGCTCTGGACAGTAACTACTTCAAAGCATTTGCACGAAGAGGAGCGGCTCGATTCGCCCAGCAACATTATGAATCTGCCCTAGAAGATTATGTAATGGTGCTCAAGCTGGATCCTGGGAACCTGGAGGCACAGAATGAAGTGATGAAATGCAAAGAGGTCATTGCTAAACTGGGTGGAAAGGCAGAAAGCCCAGAGGCTGCAGTGGTGATGCCACCTGTGGTGGACGTCAAGCAACAGCAGCTCATGGAGGAACAGCAGAGGAGACAGGAGGCGGTGGTGCAGAAAGACAGGGGGAACGCATACTTCAAAGAGGGGAAGTATGAGGCTGCAGTAGAGTACTACACCAAGGGCATGGAAGCGGACAGCACCAATGTCCTCCTGCCTGCCAACCGGGCCATGGCTTACTTAAAGCTGCAGAGATATAAAGAGGCTGAGGAGGACTGCAGTAAAGCTATAGCCCTGGATGGCACCTACTCAAAGGCCTTTGCCCGCAGAGGGACAGCTAGGGCTGCTCTGGGACTGCTAAAACAAGCTATAGAAGattttgAGGAGGTCCTGAAGCTAGAACCAGGAAACAAGCAGGCATTTCATGAGATGAAGAAGATTGCAATTGACATGGGCACCAGTGGTTTGCTGGCAACAGAGGAGCATGCACAGCGGAGAACAGTACTGCCAGTTAACAAACCACCTCACCTGCAGTCAACCAAACCATTGAGGAgagtggacattgaggaggttgGTGGAAAGATCCTTGTCCAGAAGGAGCCCTCTGCTGTGTTCACTTCAACCACAGCCCCCTGTTTTAGGCCCCAGAAGACCACCTCCATCGCAGACACTGTGAGAGAGGGTCAGGGTGAGgcctcacctccctctacctcccccagTGCTAAGATCCTGAAGATTGAAGAAATATCAAACATCCCCTCACATTCCCCTGTCAAAGGGCCTGGGGGGGATGCTGTGAGAGCACAGACACAGAAGCACAGGGAGGCAACTGTCAGTGAACCAACAGAACCGCCTGCTACACCCTCAACTGAGGTCGTACCTCCTGCCCCCACCAACAGCTTCCAGCTAGAGGCAGACCTAAGGAAGATTGGAAATGGCCCTGAAGTTATCTACAAGTATTTGAAGCAAATCCAGCCTCAGGCGTATGCAAAGATCTTCCAGAGCTCTCTTGAGCCAGACATACTCAATCAGATTTTGAGGACGTTACAAAGCTTCTACATCAAGAAGGAAGAGCCACCTGTCATACTGGAGATCCTCAGGAATCTGGCCGGTGTGAGGCGGTTCGACATGGCTGTCATGTTCATGTCCATCCCCGAGAAGAAAGttctACAAGAATTGTTTGACTTTCTTCGTCAAGCTGGACTTGAGGACGTTTCAGTAGGAGCCCTGCAAAAGAAGTATGGAGTGTGACGTGAATGCAGAACCCTAAAAAATGGACATCGCCACGGAGAGCAAAATTGCTTTTTACTTCAGCAAGCAGTCGATTGAACGAGTTTTTCAATGCTCTAGTACATGTTGCTAATCCAAACATTGCTATATGTACGCAACAAGGATTCACTTAACTTTGGCTGCCATATTGGAAGGTCTGTAACATTTGATTTAATGCTATACTGCTTTTTTCTATAGCTCAAAACATGTATAAGTTTCATCCTCGTATGAGAACAGTAGTTACTATGCATGGCCAAAACAAGAATGTTCTATCTGACTGCGGCCCACAGAACCATAGGGTTAATAGTTCAAATATGCATCTGGCGCCAATACATTTGTTATTTTCAATTATTCTGTCCAGGACTGTACATCTCATGTTCAAGATGTTAATTGCAGTGAATGAGTGTGAATACCTAATAAATTGACAATCTTTATTGATGA
>XM_021577239.2
TTGGCCTGAGGAAGGACTAAATATGTGTGGTGGAGTGGtgtttttgtttatatttttttaaagcacgGTATgagtactccagtctagtaggtggcagtAATGTAACATTTATTGtatgccaaccgccgttaaacctcaTCGACGAAGAAGTAGAAGACATGCTGTCATGGCGCCGAACACAAACAGAAAAAGACAGTATGGTGATAGTTTGTAGCTAATATTAAATGGTAGTAAGCCTCGTTTAAAATTCAACGGATAAATTACAATCAACTTGGGACGCAAGGGACAGGTAGGCATGTCTGAAAACAAAGCCATTGAACTCCAACTGCAAATGCGACAAAATGCAGAGGACCTGCATAACTTCATGAAAGATCTTGACAGCTGGGAAACTGACATAAAGAAGAAGGATGAACAACTAAGAAGTGGGAGTGTTGGCGAGTCTCAAAAAAGCCTCCCACCAGTGCGAAACAAGGACTacaaaaagaagagagagaaaaagaaggcATCAGACAACAATGCAAAGACTGAAACAAAACAAGCACCCAGGATAAAGTCTTATGACTATCAGTCATGGGACAAATTTGATGTGGACAAGGTTTTGGAGTCCATGGATAAAGAGGACAGCGCTGCTGAGTCCAATGACTCTGAATCTGAGGATTCTGGGGTTCCTGCTACTGACCAAGACACAGCTCTTGCTGAGAAGGAGAAAGGTAATCAGCTGTTTAAAGAAGGGAAGTATGATGATGCCATTGAGTGTTACACCAGAGGCATGGGCGCAGACCCTTATAACCCCGTTCTGCCTACAAACCGAGCTGCCTGCTTCTTCAGACTCAAAAAGTTTGCTGTTGCAGAGTCTGACTGCAACTTGTCCATCGCTCTGGACAGTAACTACTTCAAAGCATTTGCACGAAGAGGAGCGGCTCGATTCGCCCAGCAACATTATGAATCTGCCCTAGAAGATTATGTAATGGTGCTCAAGCTGGATCCTGGGAACCTGGAGGCACAGAATGAAGTGATGAAATGCAAAGAGGTCATTGCTAAACTGGGTGGAAAGGCAGAAAGCCCAGAGGCTGCAGTGGTGATGCCACCTGTGGTGGACGTCAAGCAACAGCAGCTCATGGAGGAACAGCAGAGGAGACAGGAGGCGGTGGTGCAGAAAGACAGGGGGAACGCATACTTCAAAGAGGGGAAGTATGAGGCTGCAGTAGAGTACTACACCAAGGGCATGGAAGCGGACAGCACCAATGTCCTCCTGCCTGCCAACCGGGCCATGGCTTACTTAAAGCTGCAGAGATATAAAGAGGCTGAGGAGGACTGCAGTAAAGCTATAGCCCTGGATGGCACCTACTCAAAGGCCTTTGCCCGCAGAGGGACAGCTAGGGCTGCTCTGGGACTGCTAAAACAAGCTATAGAAGattttgAGGAGGTCCTGAAGCTAGAACCAGGAAACAAGCAGGCATTTCATGAGATGAAGAAGATTGCAATTGACATGGGCACCAGTGGTTTGCTGGCAACAGAGGAGCATGCACAGCGGAGAACAGTACTGCCAGTTAACAAACCACCTCACCTGCAGTCAACCAAACCATTGAGGAgagtggacattgaggaggttgGTGGAAAGATCCTTGTCCAGAAGGAGCCCTCTGCTGTGTTCACTTCAACCACAGCCCCCTGTTTTAGGCCCCAGAAGACCACCTCCATCGCAGACACTGTGAGAGAGGGTCAGGGTGAGgcctcacctccctctacctcccccagTGCTAAGATCCTGAAGATTGAAGAAATATCAAACATCCCCTCACATTCCCCTGTCAAAGGGCCTGGGGGGGATGCTGTGAGAGCACAGACACAGAAGCACAGGGAGGCAACTGTCAGTGAACCAACAGAACCGCCTGCTACACCCTCAACTGAGGTCGTACCTCCTGCCCCCACCAACAGCTTCCAGCTAGAGGCAGACCTAAGGAAGATTGGAAATGGCCCTGAAGTTATCTACAAGTATTTGAAGCAAATCCAGCCTCAGGCGTATGCAAAGATCTTCCAGAGCTCTCTTGAGCCAGACATACTCAATCAGATTTTGAGGACGTTACAAAGCTTCTACATCAAGAAGGAAGAGCCACCTGTCATACTGGAGATCCTCAGGAATCTGGCCGGTGTGAGGCGGTTCGACATGGCTGTCATGTTCATGTCCATCCCCGAGAAGAAAGttctACAAGAATTGTTTGACTTTCTTCGTCAAGCTGGACTTGAGGACGTTTCAGTAGGAGCCCTGCAAAAGAAGTATGGAGTGTGACGTGAATGCAGAACCCTAAAAAATGGACATCGCCACGGAGAGCAAAATTGCTTTTTACTTCAGCAAGCAGTCGATTGAACGAGTTTTTCAATGCTCTAGTACATGTTGCTAATCCAAACATTGCTATATGTACGCAACAAGGATTCACTTAACTTTGGCTGCCATATTGGAAGGTCTGTAACATTTGATTTAATGCTATACTGCTTTTTTCTATAGCTCAAAACATGTATAAGTTTCATCCTCGTATGAGAACAGTAGTTACTATGCATGGCCAAAACAAGAATGTTCTATCTGACTGCGGCCCACAGAACCATAGGGTTAATAGTTCAAATATGCATCTGGCGCCAATACATTTGTTATTTTCAATTATTCTGTCCAGGACTGTACATCTCATGTTCAAGATGTTAATTGCAGTGAATGAGTGTGAATACCTAATAAATTGACAATCTTTATTGATGA
>XM_021577241.2
AAAAGCCTCCCACCAGTGCGAAACAAGGACTacaaaaagaagagagagaaaaagaaggcATCAGACAACAATGCAAAGACTGAAACAAAACAAGCACCCAGGATAAAGTCTTATGACTATCAGTCATGGGACAAATTTGATGTGGTAATGGATTAGGTGGATCTTGCCTGTTTCTCCTTTGATTTCAATAGACAAGGTTTTGGAGTCCATGGATAAAGAGGACAGCGCTGCTGAGTCCAATGACTCTGAATCTGAGGATTCTGGGGTTCCTGCTACTGACCAAGACACAGCTCTTGCTGAGAAGGAGAAAGGTAATCAGCTGTTTAAAGAAGGGAAGTATGATGATGCCATTGAGTGTTACACCAGAGGCATGGGCGCAGACCCTTATAACCCCGTTCTGCCTACAAACCGAGCTGCCTGCTTCTTCAGACTCAAAAAGTTTGCTGTTGCAGAGTCTGACTGCAACTTGTCCATCGCTCTGGACAGTAACTACTTCAAAGCATTTGCACGAAGAGGAGCGGCTCGATTCGCCCAGCAACATTATGAATCTGCCCTAGAAGATTATGTAATGGTGCTCAAGCTGGATCCTGGGAACCTGGAGGCACAGAATGAAGTGATGAAATGCAAAGAGGTCATTGCTAAACTGGGTGGAAAGGCAGAAAGCCCAGAGGCTGCAGTGGTGATGCCACCTGTGGTGGACGTCAAGCAACAGCAGCTCATGGAGGAACAGCAGAGGAGACAGGAGGCGGTGGTGCAGAAAGACAGGGGGAACGCATACTTCAAAGAGGGGAAGTATGAGGCTGCAGTAGAGTACTACACCAAGGGCATGGAAGCGGACAGCACCAATGTCCTCCTGCCTGCCAACCGGGCCATGGCTTACTTAAAGCTGCAGAGATATAAAGAGGCTGAGGAGGACTGCAGTAAAGCTATAGCCCTGGATGGCACCTACTCAAAGGCCTTTGCCCGCAGAGGGACAGCTAGGGCTGCTCTGGGACTGCTAAAACAAGCTATAGAAGattttgAGGAGGTCCTGAAGCTAGAACCAGGAAACAAGCAGGCATTTCATGAGATGAAGAAGATTGCAATTGACATGGGCACCAGTGGTTTGCTGGCAACAGAGGAGCATGCACAGCGGAGAACAGTACTGCCAGTTAACAAACCACCTCACCTGCAGTCAACCAAACCATTGAGGAgagtggacattgaggaggttgGTGGAAAGATCCTTGTCCAGAAGGAGCCCTCTGCTGTGTTCACTTCAACCACAGCCCCCTGTTTTAGGCCCCAGAAGACCACCTCCATCGCAGACACTGTGAGAGAGGGTCAGGGTGAGgcctcacctccctctacctcccccagTGCTAAGATCCTGAAGATTGAAGAAATATCAAACATCCCCTCACATTCCCCTGTCAAAGGGCCTGGGGGGGATGCTGTGAGAGCACAGACACAGAAGCACAGGGAGGCAACTGTCAGTGAACCAACAGAACCGCCTGCTACACCCTCAACTGAGGTCGTACCTCCTGCCCCCACCAACAGCTTCCAGCTAGAGGCAGACCTAAGGAAGATTGGAAATGGCCCTGAAGTTATCTACAAGTATTTGAAGCAAATCCAGCCTCAGGCGTATGCAAAGATCTTCCAGAGCTCTCTTGAGCCAGACATACTCAATCAGATTTTGAGGACGTTACAAAGCTTCTACATCAAGAAGGAAGAGCCACCTGTCATACTGGAGATCCTCAGGAATCTGGCCGGTGTGAGGCGGTTCGACATGGCTGTCATGTTCATGTCCATCCCCGAGAAGAAAGttctACAAGAATTGTTTGACTTTCTTCGTCAAGCTGGACTTGAGGACGTTTCAGTAGGAGCCCTGCAAAAGAAGTATGGAGTGTGACGTGAATGCAGAACCCTAAAAAATGGACATCGCCACGGAGAGCAAAATTGCTTTTTACTTCAGCAAGCAGTCGATTGAACGAGTTTTTCAATGCTCTAGTACATGTTGCTAATCCAAACATTGCTATATGTACGCAACAAGGATTCACTTAACTTTGGCTGCCATATTGGAAGGTCTGTAACATTTGATTTAATGCTATACTGCTTTTTTCTATAGCTCAAAACATGTATAAGTTTCATCCTCGTATGAGAACAGTAGTTACTATGCATGGCCAAAACAAGAATGTTCTATCTGACTGCGGCCCACAGAACCATAGGGTTAATAGTTCAAATATGCATCTGGCGCCAATACATTTGTTATTTTCAATTATTCTGTCCAGGACTGTACATCTCATGTTCAAGATGTTAATTGCAGTGAATGAGTGTGAATACCTAATAAATTGACAATCTTTATTGATGA
>XM_021577242.2
GACAACAATGCAAAGACTGAAACAAAACAAGCACCCAGGATAAAGTCTTATGACTATCAGTCATGGGACAAATTTGATGTGGTAATGGATTAGGTGGATCTTGCCTGTTTCTCCTTTGATTTCAATAGTAGGACAAGGTTTTGGAGTCCATGGATAAAGAGGACAGCGCTGCTGAGTCCAATGACTCTGAATCTGAGGATTCTGGGGTTCCTGCTACTGACCAAGACACAGCTCTTGCTGAGAAGGAGAAAGGTAATCAGCTGTTTAAAGAAGGGAAGTATGATGATGCCATTGAGTGTTACACCAGAGGCATGGGCGCAGACCCTTATAACCCCGTTCTGCCTACAAACCGAGCTGCCTGCTTCTTCAGACTCAAAAAGTTTGCTGTTGCAGAGTCTGACTGCAACTTGTCCATCGCTCTGGACAGTAACTACTTCAAAGCATTTGCACGAAGAGGAGCGGCTCGATTCGCCCAGCAACATTATGAATCTGCCCTAGAAGATTATGTAATGGTGCTCAAGCTGGATCCTGGGAACCTGGAGGCACAGAATGAAGTGATGAAATGCAAAGAGGTCATTGCTAAACTGGGTGGAAAGGCAGAAAGCCCAGAGGCTGCAGTGGTGATGCCACCTGTGGTGGACGTCAAGCAACAGCAGCTCATGGAGGAACAGCAGAGGAGACAGGAGGCGGTGGTGCAGAAAGACAGGGGGAACGCATACTTCAAAGAGGGGAAGTATGAGGCTGCAGTAGAGTACTACACCAAGGGCATGGAAGCGGACAGCACCAATGTCCTCCTGCCTGCCAACCGGGCCATGGCTTACTTAAAGCTGCAGAGATATAAAGAGGCTGAGGAGGACTGCAGTAAAGCTATAGCCCTGGATGGCACCTACTCAAAGGCCTTTGCCCGCAGAGGGACAGCTAGGGCTGCTCTGGGACTGCTAAAACAAGCTATAGAAGattttgAGGAGGTCCTGAAGCTAGAACCAGGAAACAAGCAGGCATTTCATGAGATGAAGAAGATTGCAATTGACATGGGCACCAGTGGTTTGCTGGCAACAGAGGAGCATGCACAGCGGAGAACAGTACTGCCAGTTAACAAACCACCTCACCTGCAGTCAACCAAACCATTGAGGAgagtggacattgaggaggttgGTGGAAAGATCCTTGTCCAGAAGGAGCCCTCTGCTGTGTTCACTTCAACCACAGCCCCCTGTTTTAGGCCCCAGAAGACCACCTCCATCGCAGACACTGTGAGAGAGGGTCAGGGTGAGgcctcacctccctctacctcccccagTGCTAAGATCCTGAAGATTGAAGAAATATCAAACATCCCCTCACATTCCCCTGTCAAAGGGCCTGGGGGGGATGCTGTGAGAGCACAGACACAGAAGCACAGGGAGGCAACTGTCAGTGAACCAACAGAACCGCCTGCTACACCCTCAACTGAGGTCGTACCTCCTGCCCCCACCAACAGCTTCCAGCTAGAGGCAGACCTAAGGAAGATTGGAAATGGCCCTGAAGTTATCTACAAGTATTTGAAGCAAATCCAGCCTCAGGCGTATGCAAAGATCTTCCAGAGCTCTCTTGAGCCAGACATACTCAATCAGATTTTGAGGACGTTACAAAGCTTCTACATCAAGAAGGAAGAGCCACCTGTCATACTGGAGATCCTCAGGAATCTGGCCGGTGTGAGGCGGTTCGACATGGCTGTCATGTTCATGTCCATCCCCGAGAAGAAAGttctACAAGAATTGTTTGACTTTCTTCGTCAAGCTGGACTTGAGGACGTTTCAGTAGGAGCCCTGCAAAAGAAGTATGGAGTGTGACGTGAATGCAGAACCCTAAAAAATGGACATCGCCACGGAGAGCAAAATTGCTTTTTACTTCAGCAAGCAGTCGATTGAACGAGTTTTTCAATGCTCTAGTACATGTTGCTAATCCAAACATTGCTATATGTACGCAACAAGGATTCACTTAACTTTGGCTGCCATATTGGAAGGTCTGTAACATTTGATTTAATGCTATACTGCTTTTTTCTATAGCTCAAAACATGTATAAGTTTCATCCTCGTATGAGAACAGTAGTTACTATGCATGGCCAAAACAAGAATGTTCTATCTGACTGCGGCCCACAGAACCATAGGGTTAATAGTTCAAATATGCATCTGGCGCCAATACATTTGTTATTTTCAATTATTCTGTCCAGGACTGTACATCTCATGTTCAAGATGTTAATTGCAGTGAATGAGTGTGAATACCTAATAAATTGACAATCTTTATTGATGA

Function

NR:

description
RNA polymerase II-associated protein 3-like isoform X1

GO: NA

KEGG:

id description
K23002 RPAP3; RNA polymerase II-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577240.2 False 2592 mRNA 0.47 17 23976673 23985903
XM_021577239.2 False 2749 mRNA 0.46 17 23980485 23985903
XM_021577241.2 False 2350 mRNA 0.47 15 23981400 23985903
XM_021577242.2 True 2291 mRNA 0.47 15 23981463 23985903

Neighbor

gene id symbol gene type direction distance location
LOC110500082 LOC106609433 coding upstream 40114 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 72986 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 185366 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 244621 23710269 ~ 23732052 (+)
LOC118942913 NA coding upstream 267512 23708462 ~ 23709161 (+)
LOC110500093 LOC106609369 coding downstream 161140 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 190276 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 291894 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 330016 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 380924 24366827 ~ 24374963 (+)
G1719122 NA non-coding upstream 18478 23957511 ~ 23958195 (+)
G1719121 NA non-coding upstream 20670 23955680 ~ 23956003 (+)
G1719117 NA non-coding upstream 23776 23952575 ~ 23952897 (+)
G1719112 NA non-coding upstream 24600 23947696 ~ 23952073 (+)
G1719102 NA non-coding upstream 36987 23939367 ~ 23939686 (+)
G1719153 LOC106609441 non-coding downstream 2451 23988354 ~ 23988649 (+)
G1719154 LOC106609441 non-coding downstream 2962 23988865 ~ 23989209 (+)
G1719155 LOC106609441 non-coding downstream 3474 23989377 ~ 23989653 (+)
G1719156 LOC106609441 non-coding downstream 3881 23989784 ~ 23990093 (+)
G1719188 NA non-coding downstream 35294 24021197 ~ 24021448 (+)
G1717785 NA other upstream 719861 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 875864 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 953909 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1096750 22820752 ~ 22879923 (+)
G1719225 NA other downstream 87502 24073405 ~ 24074448 (+)
G1719268 NA other downstream 149861 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1625913 25611816 ~ 25612268 (+)

Expression


Co-expression Network