LOC110500093 (LOC106609369)


Basic Information

Item Value
gene id LOC110500093
gene name LOC106609369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24147043 ~ 24157840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577256.2
CATAATTGCTGTTAATAATTACAGTTAGGAACGATAAGCAACCCGGTAGAGGGGATATGTTAATTGCAACATTCCCAAGGGTCCCGGTCCCAGATAATCGTAGGGTGTTCCTCTgtgcggagagaaagagagagaaagacaggaaaaGTTTGGATACACTGAAGCTGCGTACACAGATAAACTAGTCAGAGACCCTGTGAGGAACAGGTGCCGCACCACTCAAGACGAAGAGGGTAAAGATGAAGCAGTACATGGTCACCAGGCCACTCTACTCAGAGGACGCCTTCGCAGACGTACATGAGAAGATCCACAGGCACCATAAGACCGTGCGGCACCATGTCAAGCAGTATTTCACtTGTGACCTCAAGCGCGCTAAGAACGCAGCGCTCTCTCTGCTGCCTTTCATTGGTTGGATGAGAATCTACCAGCTGAAGGAATGGTTGCTGAGTGATATTGTATCTGGGGTCAGCACTGGACTGGTAGCTGTTCTACAAGGTCTGGCATACTCCCTgctggcctccctccctccatggtaCGGACTCTTCACTGCTTTCTTCCCAGTGATCGTCTACTTCTTCCTTGGCACTTCCAGACATATCTCAGTAGGGGCGTTCCCTGTTCTGAGCCTCATGGTGGGTGCAGTGGTGACGAGGCTTGTGCCTGATGAAGGCCCCCCAGTCAACATCACTGGGTTTGAGGGGCTGACCAGCGATGAGCAGAGAGTAATGGTGGCCGCCTCTGTCACCTTCCTCATGGGGATAATGCAGCTGGCCATGGGTCTGCTGCAGGTAGGCTTCATCGTCATGTACCTGTCAGACACGCTGGTGTCTGGGTTCACCACCGCGGCTGCTGTCCACATCCTGGTGTCCCAGCTGAAGTTTGTGTTGGGTCTGGTGGTGCCGGGACTCAGTGGACCGCTGTCCATCGTTTATACCCTGGAGAAGATCTTTGTCCAGATTGAGAAGACCAACGTGTGTGACCTGGTGACGTCCATATTGATCATGGTGGTGGTGTTCATAGTGAAGGAGATCAACGATAGATACAAAGCCAAGCTGCCTGTTCCAATTCCCATAGAGGTTATCATGACTGTCATCGCTTGTGGCGTTTCCTATGCATTCAACTTCCGGGTGAATTATAAAGTTGATGTTGTCGGCCGTATTCCAGTGGGGTATGAGTCCCCTATGGGCCCGAACATGCAGATCTTCGGGCAGACTGCTGTTGAGGCGTTCCCTATGGCCATAGTGGGCTTTGCTGTAGCCTTCTCTGTCGCCAAGGTCTACTCAGTCAAACATGATTACATCATAGACGGAAATCAGGAGCTGATAGCTTTTGGGGCCAGTAACATAATTGGAGCAGCCTTTAAGTCGTTTGCAGCAAGCACAGCTCTCTCCAGGAGTGCGGTACAGGAGAGTACAGGTGGCAAAACCCAGATCGCTGGTCTACTGTCAGCGCTCATCGTGATGGTCGTCACCTTGGCTATCGGGTTCTTATTGGAGCCACTCCCAAAGTCGGTGTTGGGGGCAGTGGTCATAGTCAACCTGAAGGGGATGTTGATGCAGATCAGAGAAGTCCCTTACCTGTGGAGGAGAGACCGGCCCGACTGTGTGGTGTGGCTGGTGACCTGCCTGGCTTCCATCCTGTTGGGGCTGGATCTGGGGCTGGCTGTAGGCCTAGGGATCGAGCTGCTCACCGTTGTCTTCAGGGCTCAGTTCCCACGTTGCAGTGTCCTGGCCAATATCACAGGAACAGATATCTACAAAGAGCGCAAGGATTACATGAGTATCTATGAGCCACAGGGTGTGAAGATCTTCAGGATACCGTCACCCATCTTCTTTGCCAATATAGATTTTTTCCGGGGCAAGCTGGTGGAAGCTGTGGGCTTTAACCCTTTGAGGGTGTTGAGGAAGAGAAACAAAGCCCTGAGGACGATCAGGAAACTTCTAAAGAAAGGAGAGCTGCAGATGACATCTAAAGGCCTACTGCTCACCAGCTCTGGTCCCATTGAGGAGTCTGAGGATGAGAGCAACATGGAGGATCTGGACCAGCCCACTGACTTCAAGGACCTTCCTGTCCAGGTGAACTGGAACTCTGAGCTTCCTGCCAACATCCAAGTCCCCAGAGTAGACGTCCACAGCCTGATCCTGGACTTCTCAGCCGTCTCCTTCCTCGACATCTCTGCCCTCAAGGGACTCAAAGCGGCACTCAAAGAGCTCATTCGGGTTGAAGTTGAGGTCTACATTGTGGCATGTGACGCGTACATCCTGAAGAAACTGCACAGCTGTATGTTCTTTGACGACGAGGTGAAGTCGTCCATGTTTTTCCTGACTCTCCACGATGCCATGCTGCATATCCTGGACAAACATCCAGTAAACTCTGAAAACACAAAAGTCTGTGAAAAGGTTATAACAACAGCCACTATCCATGGCAACCAATGCAATGGTGTGTCAAGTTTGCGTAGCAGGGACCGATTTGTACATGTCTCAGAGTCAGAAACCAAGTTCTAGTTCCAGAACTACACTCTCAGATGTCAGTATTTTAAGGGTTCTTCGATTGTCCCTTTCCACAGATGggtctacatggaacccaaaagaggtctacctggaaccaaaaagggttatatttggaaccaaaaagggttctcctatggggacagctgaagcaatttttctaagagtgtagtgatGTGTACAGTACTTTCATTTCCTGGGATGGCATACATTTCCTGTGATCGCTGTGCTTTCTGGTGATAATTGACATAAGACACATGATGCTGTCCTAAAATGGACACCATACAGTAACCATATGTACACAGGACACCACTTATTGAGCTAATAATTGTACATGAAATATATTTGAATTTTTTTTGTACTGTCAAACAGATACTCAATGGCAAGTGTTATGAGATTTTGAAAGAAATATCAGAAAACGTCATTCATTTATTTCTTTTTAAATAGCTCGaccatgttgcgttttatatgtGTGCATAGGGATTTTATAGGAATGTTTACTTTGATGTATTTTATGTGTAAAATAAATGTACTTCTTAGCACAAA

Function

NR:

description
chloride anion exchanger

GO: NA

KEGG:

id description
K14078 SLC26A3, DRA; solute carrier family 26 (chloride anion exchanger), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577256.2 True 3053 mRNA 0.49 21 24147043 24157840

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 161140 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 210484 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 243356 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 355736 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 414991 23710269 ~ 23732052 (+)
LOC110500095 LOC106609365 coding downstream 18339 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 119957 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 158079 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 208987 24366827 ~ 24374963 (+)
trnay-gua-63 NA coding downstream 224697 24382537 ~ 24382624 (+)
G1719269 NA non-coding upstream 9429 24137266 ~ 24137614 (+)
G1719267 NA non-coding upstream 11404 24134085 ~ 24135639 (+)
G1719266 NA non-coding upstream 13404 24133358 ~ 24133639 (+)
G1719261 NA non-coding upstream 25390 24121357 ~ 24121653 (+)
G1719259 NA non-coding upstream 26645 24120030 ~ 24120398 (+)
G1719277 NA non-coding downstream 6802 24164642 ~ 24164864 (+)
G1719278 NA non-coding downstream 7223 24165063 ~ 24165387 (+)
G1719281 NA non-coding downstream 12977 24170817 ~ 24171023 (+)
G1719463 NA non-coding downstream 111526 24269366 ~ 24269623 (+)
G1719486 NA non-coding downstream 144942 24302782 ~ 24303202 (+)
G1719268 NA other upstream 10720 24135764 ~ 24136323 (+)
G1719225 NA other upstream 72595 24073405 ~ 24074448 (+)
G1717785 NA other upstream 890231 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 1046234 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 1124279 23014617 ~ 23032420 (+)
G1720836 NA other downstream 1453976 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1478495 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1880462 26038302 ~ 26041843 (+)

Expression


Co-expression Network