LOC110500097 (LOC106576231)


Basic Information

Item Value
gene id LOC110500097
gene name LOC106576231
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24315919 ~ 24321712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577263.2
TTGGGAATTACACGGGAATGCAGATGGGAGACTTGTGATCAGAATACCAGGCAGGCAGCCATTGCGAGTttagtttaccagtcaaattgccagggcgAGATGTTCCAAAGTCGTTCAATATGTTATATTTCTACGATACATCCACCACAGAGTGGCAGTAGCTAGCTTTGGTCAGTCACACACATTGCTAACACCAAAGAAGATATTTACATCTCCGGCTATGTCGCTTTTGTCAACAAAGAAGTTACGGTGTTACTTTCCCCACTTGTTCAACCTGATAGAGAAAACAGGTTATGCTGTAGCCAACATGCTGGGGACTTCAACATCCACTGAACAGGGGGCTAGGGAGAATCCCATAGTGCTTGAGATGTGTCGAATATCCCCTCTTAAATTTGAAGACACTCCTGAATTAATCTCATCAGTGGCACCTGATACAGTCGAGGGATTCATAAAAGCCAAAAAGAATAAAGCACTATCTGAACAGGGACCAGAAGAACCGGCAATTGAGCATAATCAAAAGGATGGTCACCGGTTGACAGTCGAGAAAAGAGGTAAAGACCCTAAACATAAAGAGCAAACAGTGACTGAGCTGGAagtggtggagaaagagaggaagaaactTAAAAAAGGAAACGAAGAGAAGCAGCCAAATGTTATTCAAGATGAAATGGAGGTACCAGATCCCGAGGAACAAACTGGAGGGAAAACAAAGAAAAAGTCAAAGAATCTTCAAACACAACAGGTGGGAGTGGATTTAGTGATTGCTGATGAGAATAATATGAATAGCCGGAAGAATAAGAGAAAACATAATGACATTGAGCCAGAACGGGTGATAGACAGTGTCCTCTCAAAGGCTGCAGTAGACGTTTCAGCTGTAACTGCGCCAGATGAAACCAGAAGGAGTAAGAAGAAACACaagaacagacaaacagaacTTGAGGAGGGAGCGGAAAGCTGTCGGACAGTTTCAAGAACAGCAGATGATCCAAAAATCATAGAACTGCACCCTGAAATGGTCAAGAGAGGTAAAAATGTGGTAACTGAGGCAGAGGAGAATGTAAAAAAAAggaaacaaaataagaaaaaacacACAGAGAGTGAACTGAATGATTGTCCAGATAAAGCAGACCGTCCAGGTATAAAAGAACAAACTGAAAGAAAATTGAAGTCAAAGAGGCCAAAAACAGATGGAGGGTCTGCCGCTGTGGAGGTCAGCGGGAGAAAGAAAAAACACCGCAGAGTGTCAGACAAGGGAATGGCCAGTGTCCACTCTGCAGCAGATGTTTTGGATTTAGCTGTTCCAAATGACAACAGGACTCATGATGCTGGAGCAAACGGTGAGACAGAGGGCGCCCATTCAACCATGGTTGAGACAGGGACCCAACACAACAAACCCTGCCTAAAGGAAGAAACTCTCCTTGTGGACGACTGGCAGGCTCTGAAGGATCTCAAAGAGTTCATTCCCAACGTTGAGTCAAAGTCTGTTGACGAGATCCAGAAGATGATAAAGTATGATCTTGATCGATTCAAGGAATTCCGAAGACAAGGCCTTTCCCTGCGAAGTGGAAGATTCAATGCGCAGGAGAACGAACGACTCAGGAGTAACGTCTACGACTTCCTGTCTCTCACTGGGATTCAGAGTGGCTCTGAGCTCTTCCATCCACAGCGCTTCAAAGAGGAAGAAGCGAATATCAAGAAATTGAAGAGGCAGCACAGATTCCATGAAAGAATAGGTGAAGGAATACCCAGGTCTTGGCATCAAGTCTATATACGTGGGAGGAAAATGTTTGATGTCAGCAACTACAAGGGCAGGTTCACCGAAGAAGAGCTTCACACTTTGAAAAAACTACAGACGTTGCACGGCAACAAGTGGGCGAAGATCTCGGCGTTGACTGGCCGAAGCGAATCGTCCCTAGAGAAACGTTTTGCTCAAATGTCCGCAAACAAAGGTGCGTGGACCGAGGAAGAACTGAAAAGACTAATGGAAGCTGTGCGGAAGCACCTGGTGGGACAGGCAGAGCCTGGCAGTGGACCGGCCACCGTCAGGAAAGACCAGCTGTACAACAACATCCCCTGGACAGATGTGTGCCAGACGGTTGAAACGCGCCACTGGTCCCAGTGTCGAATAAAATGGTTGGGTGTTTTGAAGCACAAAATGGCATATGGACAACCAGTATTCAGTGGACACACGAAATCATTACAGGGCAAAGTGGATTTGATCAAAGCCTTGAATGCAATGCAGGTGGAAGATGTTGCAGATATCAACTGGGAAGAAATTGCTCACACAATTGGGGATGTTACTCCACGCTACGTACAGACACACTACTACAGGCTAAAGGTAGCCAACGTTCCGTTGTGGCAGAGCATGTCCTTCTGTGAGATCATTGACTTCCTCAACAGTAGAGTTCTCCCCAATTGTGAAGAGCGCCTCAAAGTTCTGATAAAGTCAGGAGAGGTGGTGTCCAGAAATGATCCTCAAGAGCTCTTCCTACTCTCTGAGATATTTGATAATGAGGATGGCAACTACTACAGCGACATTCAGAACAGCTGAAGAAAACAGCACGTGGACCTGGCTTAAGGCCCCACTGTGGGTGTAGCTGTGTGCCCCTCTGTCTCACAATTAAGGATTCAGCTCGTTCATGGAGGTGGTTAATGATGATCAACTTATTTGTAACTAAATGTTCATTTGGATTTCTGTAAGACGTTACAATGTCATCACCCCATAATGATTCACTTTGATTTAATGCATCTGGTGAATACTCAGATGAGAGTTGTATTATGTTTGCAAAATCTGACAGGCGACATTTTTATAGAATTCCATTTTATTTTTGAGAATAAATGTCTCCTGGCTTCAGGTTGTTCTGCCTTGA
>XM_021577264.2
CCCCACTTGTTCAACCTGGTGAATTTATTTTTCTTTACGAGTTTTATCATGTTTGATTTACACAGCTAGCTAGTCTATTTGAATGGACTATCACTAGCTAGCTCGTTATCCCAACATTGATCACACTTGTGCGCATAGAGAAAACAGGTTATGCTGTAGCCAACATGCTGGGGACTTCAACATCCACTGAACAGGGGGCTAGGGAGAATCCCATAGTGCTTGAGATGTGTCGAATATCCCCTCTTAAATTTGAAGACACTCCTGAATTAATCTCATCAGTGGCACCTGATACAGTCGAGGGATTCATAAAAGCCAAAAAGAATAAAGCACTATCTGAACAGGGACCAGAAGAACCGGCAATTGAGCATAATCAAAAGGATGGTCACCGGTTGACAGTCGAGAAAAGAGGTAAAGACCCTAAACATAAAGAGCAAACAGTGACTGAGCTGGAagtggtggagaaagagaggaagaaactTAAAAAAGGAAACGAAGAGAAGCAGCCAAATGTTATTCAAGATGAAATGGAGGTACCAGATCCCGAGGAACAAACTGGAGGGAAAACAAAGAAAAAGTCAAAGAATCTTCAAACACAACAGGTGGGAGTGGATTTAGTGATTGCTGATGAGAATAATATGAATAGCCGGAAGAATAAGAGAAAACATAATGACATTGAGCCAGAACGGGTGATAGACAGTGTCCTCTCAAAGGCTGCAGTAGACGTTTCAGCTGTAACTGCGCCAGATGAAACCAGAAGGAGTAAGAAGAAACACaagaacagacaaacagaacTTGAGGAGGGAGCGGAAAGCTGTCGGACAGTTTCAAGAACAGCAGATGATCCAAAAATCATAGAACTGCACCCTGAAATGGTCAAGAGAGGTAAAAATGTGGTAACTGAGGCAGAGGAGAATGTAAAAAAAAggaaacaaaataagaaaaaacacACAGAGAGTGAACTGAATGATTGTCCAGATAAAGCAGACCGTCCAGGTATAAAAGAACAAACTGAAAGAAAATTGAAGTCAAAGAGGCCAAAAACAGATGGAGGGTCTGCCGCTGTGGAGGTCAGCGGGAGAAAGAAAAAACACCGCAGAGTGTCAGACAAGGGAATGGCCAGTGTCCACTCTGCAGCAGATGTTTTGGATTTAGCTGTTCCAAATGACAACAGGACTCATGATGCTGGAGCAAACGGTGAGACAGAGGGCGCCCATTCAACCATGGTTGAGACAGGGACCCAACACAACAAACCCTGCCTAAAGGAAGAAACTCTCCTTGTGGACGACTGGCAGGCTCTGAAGGATCTCAAAGAGTTCATTCCCAACGTTGAGTCAAAGTCTGTTGACGAGATCCAGAAGATGATAAAGTATGATCTTGATCGATTCAAGGAATTCCGAAGACAAGGCCTTTCCCTGCGAAGTGGAAGATTCAATGCGCAGGAGAACGAACGACTCAGGAGTAACGTCTACGACTTCCTGTCTCTCACTGGGATTCAGAGTGGCTCTGAGCTCTTCCATCCACAGCGCTTCAAAGAGGAAGAAGCGAATATCAAGAAATTGAAGAGGCAGCACAGATTCCATGAAAGAATAGGTGAAGGAATACCCAGGTCTTGGCATCAAGTCTATATACGTGGGAGGAAAATGTTTGATGTCAGCAACTACAAGGGCAGGTTCACCGAAGAAGAGCTTCACACTTTGAAAAAACTACAGACGTTGCACGGCAACAAGTGGGCGAAGATCTCGGCGTTGACTGGCCGAAGCGAATCGTCCCTAGAGAAACGTTTTGCTCAAATGTCCGCAAACAAAGGTGCGTGGACCGAGGAAGAACTGAAAAGACTAATGGAAGCTGTGCGGAAGCACCTGGTGGGACAGGCAGAGCCTGGCAGTGGACCGGCCACCGTCAGGAAAGACCAGCTGTACAACAACATCCCCTGGACAGATGTGTGCCAGACGGTTGAAACGCGCCACTGGTCCCAGTGTCGAATAAAATGGTTGGGTGTTTTGAAGCACAAAATGGCATATGGACAACCAGTATTCAGTGGACACACGAAATCATTACAGGGCAAAGTGGATTTGATCAAAGCCTTGAATGCAATGCAGGTGGAAGATGTTGCAGATATCAACTGGGAAGAAATTGCTCACACAATTGGGGATGTTACTCCACGCTACGTACAGACACACTACTACAGGCTAAAGGTAGCCAACGTTCCGTTGTGGCAGAGCATGTCCTTCTGTGAGATCATTGACTTCCTCAACAGTAGAGTTCTCCCCAATTGTGAAGAGCGCCTCAAAGTTCTGATAAAGTCAGGAGAGGTGGTGTCCAGAAATGATCCTCAAGAGCTCTTCCTACTCTCTGAGATATTTGATAATGAGGATGGCAACTACTACAGCGACATTCAGAACAGCTGAAGAAAACAGCACGTGGACCTGGCTTAAGGCCCCACTGTGGGTGTAGCTGTGTGCCCCTCTGTCTCACAATTAAGGATTCAGCTCGTTCATGGAGGTGGTTAATGATGATCAACTTATTTGTAACTAAATGTTCATTTGGATTTCTGTAAGACGTTACAATGTCATCACCCCATAATGATTCACTTTGATTTAATGCATCTGGTGAATACTCAGATGAGAGTTGTATTATGTTTGCAAAATCTGACAGGCGACATTTTTATAGAATTCCATTTTATTTTTGAGAATAAATGTCTCCTGGCTTCAGGTTGTTCTGCCTTGA
>TU1969980
GGATTCATAAAAGCCAAAAAGAATAAAGCACTATCTGAACAGGGACCAGAAGAACCGGCAATTGAGCATAATCAAAAGGATGGTCACCGGTTGACAGTCGAGAAAAGAGGTAAAGACCCTAAACATAAAGAGCAAACAGTGACTGAGCTGGAagtggtggagaaagagaggaagaaactTAAAAAAGGAAACGAAGAGAAGCAGCCAAATGTTATTCAAGATGAAATGGAGGTACCAGATCCCGAGGAACAAACTGGAGGGAAAACAAAGAAAAAGTCAAAGAATCTTCAAACACAACAGGTGGGAGTGGATTTAGTGATTGCTGATGAGAATAATATGAATAGCCGGAAGAATAAGAGAAAACATAATGACATTGAGCCAGAACGGGTGATAGACAGTGTCCTCTCAAAGGCTGCAGTAGACGTTTCAGCTGTAACTGCGCCAGATGAAACCAGAAGGAGTAAGAAGAAACACaagaacagacaaacagaacTTGAGGAGGGAGCGGAAAGCTGTCGGACAGTTTCAAGAACAGCAGATGATCCAAAAATCATAGAACTGCACCCTGAAATGGTCAAGAGAGGTAAAAATGTGGTAACTGAGGCAGAGGAGAATGTAAAAAAAAggaaacaaaataagaaaaaacacACAGAGAGTGAACTGAATGATTGTCCAGATAAAGCAGACCGTCCAGGTATAAAAGAACAAACTGAAAGAAAATTGAAGTCAAAGAGGCCAAAAACAGATGGAGGGTCTGCCGCTGTGGAGGTCAGCGGGAGAAAGAAAAAACACCGCAGAGTGTCAGACAAGGGAATGGCCAGTGTCCACTCTGCAGCAGATGTTTTGGATTTAGCTGTTCCAAATGACAACAGGACTCATGATGCTGGAGCAAACGGTGAGA

Function

NR:

description
transcription termination factor 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577263.2 False 2870 mRNA 0.45 11 24315919 24321712
XM_021577264.2 False 2727 mRNA 0.45 11 24316178 24321712
TU1969980 True 901 TUCP 0.43 1 24316638 24317538

Neighbor

gene id symbol gene type direction distance location
adm2a LOC106609361 coding upstream 21061 24277797 ~ 24294858 (+)
LOC110500095 LOC106609365 coding upstream 125211 24176179 ~ 24190708 (+)
LOC110500093 LOC106609369 coding upstream 158079 24147043 ~ 24157840 (+)
rpap3 LOC106609438 coding upstream 330016 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 379360 23910005 ~ 23936559 (+)
LOC110500099 LOC106609356 coding downstream 45115 24366827 ~ 24374963 (+)
trnay-gua-63 NA coding downstream 60825 24382537 ~ 24382624 (+)
trnay-gua-64 NA coding downstream 61436 24383148 ~ 24383235 (+)
LOC110500102 ankrd16 coding downstream 61729 24383441 ~ 24384781 (+)
LOC110500103 LOC106609353 coding downstream 67600 24389312 ~ 24401010 (+)
G1719493 NA non-coding upstream 5493 24310046 ~ 24310426 (+)
G1719486 NA non-coding upstream 12717 24302782 ~ 24303202 (+)
G1719463 NA non-coding upstream 46296 24269366 ~ 24269623 (+)
G1719281 NA non-coding upstream 144896 24170817 ~ 24171023 (+)
G1719278 NA non-coding upstream 150532 24165063 ~ 24165387 (+)
G1719507 NA non-coding downstream 28983 24350695 ~ 24351007 (+)
G1719508 NA non-coding downstream 29482 24351194 ~ 24351550 (+)
G1719511 NA non-coding downstream 39931 24361643 ~ 24361890 (+)
G1719512 LOC106576230 non-coding downstream 40406 24362118 ~ 24362462 (+)
G1719514 NA non-coding downstream 44121 24365833 ~ 24366066 (+)
G1719268 NA other upstream 179596 24135764 ~ 24136323 (+)
G1719225 NA other upstream 241471 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1059107 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 1215110 23098972 ~ 23100823 (+)
G1720836 NA other downstream 1290104 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1314623 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1716590 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 2008062 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2499935 26821647 ~ 26821935 (+)

Expression


Co-expression Network