LOC110500099 (LOC106609356)


Basic Information

Item Value
gene id LOC110500099
gene name LOC106609356
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24366827 ~ 24374963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577266.2
GGGAGCAGGTATAGGTCCACTTCATCAATCCACCGCCTCTAAAGGGTGGATCAGATAAAGGAGTCTACAACCACGGACGCACACCGTTTCAAACCTATGCCGGGGTGTAGGAATAAAGTACAATATAGTGAAATACGGGACTAGGACTATAGTGATATTTTTTTTCTATTAAAATGAACCGAATGTGGACAATAGGCCTCTTTTGTGCTCTTCTAGCTTTCAGTTCTGTCAGAGCGGAGGATGAGGTTGACATtgatgggacagtggaggaggacttGGGCAAAAGTAGAGACGGCTCCCGGACAGATGACGAGGTCGTCCAGAGGGAAGAGGAGGCTATCCAGCTTGATGGCCTGAACGCAGCGCAGATAAAGGAAATTCGGGAAAAATCAGAAAAGCATGTCTTCAAGGCCGAGGTGAACAGAATGATGAAGCTCATCATCAACTCCCTGTACAAGAACAAAGAGATCTTCCTGAGGGAACTGATCTCCAACGCTTCCGATGCTCTGGATAAGATCCGGTTGCTGTCCCTGACCAATGACGAGGCACTTACTGGTAACGAGGAGCTGACAGTGAAAATCAAGTCTGACAAGGAGAAGAACATGCTTCACATTACCGACACCGGCATTGGCATGACCAAAGAAGACCTGGTCAGGAACCTCGGCACCATCGCCAAATCCGGCACCAGCGAGTTCCTCAACAAGATGACAGAGATGCAGACCGAGGGCCAGTCAACCTCTGAgctgattggtcagtttggcGTGGGCTTCTACTCTGCGTTCTTGGTGGCTGACAAGGTGATCGTAACCACGAAGCACAACAACGGCACGCAGCACATATGGGAGTCTGACTCCAACGAGTTCTCCGTCATCGAGGACCCCCGCGGGGACACCCTCGGCAGGGGCACCACCATCACTTTGGTGATGAAGGAGGAGGCAACAGACTACTTGGAGCTGGAGACCATCAAGAACCTTGTGAGGAAATACTCCCAGTTCATCAACTTCCCCATCTACGTATGGAGTAGCAAGACTGAGACTGTAGAGGAGCCTATTGATGAGACTGACGCCGATAAGAAGGATGAAGACCACGATGAGgttgaggtggaggaagaggaggaggacaagcCAAAGACGAAGAAGGTGGAGAAGACGGTGTGGGACTGGGAGCTGATGAATGACATCAAGCCCATCTGGCAGAGGCCTGccaaggaggtggaggaggatgagTACAAGGCCTTCTACAAGACCTTCTCCAGGGACACAGACGAGCCCATCTCCCACATCCACTTCACAGCAGAGGGGGAGGTCACCTTCAAGTCCATCCTCTTTGTGCCTGCCGCAGCTCCCCGGGGACTCTTCGACGAGTACGGTTCTAAGAAGAACGACTTCATTAAGCTCTTTGTGCGTAGAGTTTACATCACTGATGACTTCCATGACATGATGCCTAagtacttgaactttgtgaaagGAATGGTTGACTCCGATGACCTTCCTCTGAATGTCTCAAGAGAAACTCTCCAGCAGCACAAACTTCTCAAGGTCATTCGCAAGAAGCTGGTACGCAAGACCCTGGACATGATCAAGAAGATCGCAGAGGAGCAGTACAACGAGAAGTTCTGGAAGGAGTTTGGCACCAACATCAAGCTGGGTGTGATCGAGGACCACTCCAACCGGACCCGTCTGGCCAAGCTGCTGCGTTTCCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAACAGTACGTGGAGAGGATGAAGGAGAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCAGACAAGAGGCCGAGTCGTCTCCCTTCGTGGAGAAGCTGTTGAAAAGGGGTTATGAGGTCATCTACCTGACAGAGCCCGTGGATGAGTACTGTATCCAGGCCCTACCGGAGTTTGATGGCAAGCGCTTCCAGAACGTGGCCAAGGAGGGCGTCAAGTTTGACGAGAGTGACAAGACCAAGGAGAAGCGGGAGGGCCTGGAGAAGGAGTATGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTGAAGGACAAGATCGAGAAGGCTGTGCTGTCCCAGAGGCTGACCAACTCTCCCTGTGCCCTGGTAGCCAGCCAGTACGGCTGGTCCGGTAACATGGAAAGGATCATGAAGGCACAGGCCTACCAGACCGGAAAAGACATATCCACAAATTATTATGCAAGCCAGAAGAAAACACTCGAGATCAACCCCAAACACCCTCTGATTAAAGAAATGTTGAAGAGAATAAATGATAATGCAGAGGACCAGACTGCCTCGGACCTGGCTGTAGTGCTGTTTGAGACGGCCACACTACGGTCAGGCTACCAGCTGGCTGACACCAAAGCTTATGGAGACAGAATAGAACGCATGCTCCGACTCAGCATGAATGTGGACCTCAATGAAGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGGTTAAAGCAGATGAGGAAGATGAAGATTCGGGAGCCACAGGAAGAGATGAGCTGTGAGACGGCCTgagtgagggggtgggagggaaGGGTGAGGGAGTGAACTGGGGGGCAGAGCTTTGACTGGAACTAGGTCCATCTTCTCTGCTGAAAAGGAGCGGGTGGGTGTTTGGATTTTAGAATCTTCtgattgtttttgtttattttctacATTCCTACATGATTGTAACTGTGTTAATATTTAACCGAGCCGGTTATGGAGTGCTGTCTTCCTGTCACGAGAACATTAAATGTTGCCGGAAAGGCACCTGTGGTGTCTTGTTTAAA
>XM_036957389.1
GGAGCAGGTATAGGTCCACTTCATCAATCCACCGCCTCTAAAGGGTGGATCAGATAAAGGAGTCTACAACCACGGACGCACACCGTTTCAAACCTATGCCGGGGTGTAGGAATAAAGTACAATATAGTGAAATACGGGACTAGGACTATAGTGATATTTTTTTTCTATTAAAATGAACCGAATGTGGACAATAGGCCTCTTTTGTGCTCTTCTAGCTTTCAGTTCTGTCAGAGCGGAGGATGAGGTTGACATtgatgggacagtggaggaggacttGGGCAAAAGTAGAGACGGCTCCCGGACAGATGACGAGGTCGTCCAGAGGGAAGAGGAGGCTATCCAGCTTGATGGCCTGAACGCAGCGCAGATAAAGGAAATTCGGGAAAAATCAGAAAAGCATGTCTTCAAGGCCGAGGTGAACAGAATGATGAAGCTCATCATCAACTCCCTGTACAAGAACAAAGAGATCTTCCTGAGGGAACTGATCTCCAACGCTTCCGATGCTCTGGATAAGATCCGGTTGCTGTCCCTGACCAATGACGAGGCACTTACTGGTAACGAGGAGCTGACAGTGAAAATCAAGTCTGACAAGGAGAAGAACATGCTTCACATTACCGACACCGGCATTGGCATGACCAAAGAAGACCTGGTCAGGAACCTCGGCACCATCGCCAAATCCGGCACCAGCGAGTTCCTCAACAAGATGACAGAGATGCAGACCGAGGGCCAGTCAACCTCTGAgctgattggtcagtttggcGTGGGCTTCTACTCTGCGTTCTTGGTGGCTGACAAGGTGATCGTAACCACGAAGCACAACAACGGCACGCAGCACATATGGGAGTCTGACTCCAACGAGTTCTCCGTCATCGAGGACCCCCGCGGGGACACCCTCGGCAGGGGCACCACCATCACTTTGGTGATGAAGGAGGAGGCAACAGACTACTTGGAGCTGGAGACCATCAAGAACCTTGTGAGGAAATACTCCCAGTTCATCAACTTCCCCATCTACGTATGGAGTAGCAAGACTGAGACTGTAGAGGAGCCTATTGATGAGACTGACGCCGATAAGAAGGATGAAGACCACGATGAGgttgaggtggaggaagaggaggaggacaagcCAAAGACGAAGAAGGTGGAGAAGACGGTGTGGGACTGGGAGCTGATGAATGACATCAAGCCCATCTGGCAGAGGCCTGccaaggaggtggaggaggatgagTACAAGGCCTTCTACAAGACCTTCTCCAGGGACACAGACGAGCCCATCTCCCACATCCACTTCACAGCAGAGGGGGAGGTCACCTTCAAGTCCATCCTCTTTGTGCCTGCCGCAGCTCCCCGGGGACTCTTCGACGAGTACGGTTCTAAGAAGAACGACTTCATTAAGCTCTTTGTGCGTAGAGTTTACATCACTGATGACTTCCATGACATGATGCCTAagtacttgaactttgtgaaagGAATGGTTGACTCCGATGACCTTCCTCTGAATGTCTCAAGAGAAACTCTCCAGCAGCACAAACTTCTCAAGGTCATTCGCAAGAAGCTGGTACGCAAGACCCTGGACATGATCAAGAAGATCGCAGAGGAGCAGTACAACGAGAAGTTCTGGAAGGAGTTTGGCACCAACATCAAGCTGGGTGTGATCGAGGACCACTCCAACCGGACCCGTCTGGCCAAGCTGCTGCGTTTCCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAACAGTACGTGGAGAGGATGAAGGAGAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCAGACAAGAGGCCGAGTCGTCTCCCTTCGTGGAGAAGCTGTTGAAAAGGGGTTATGAGGTCATCTACCTGACAGAGCCCGTGGATGAGTACTGTATCCAGGCCCTACCGGAGTTTGATGGCAAGCGCTTCCAGAACGTGGCCAAGGAGGGCGTCAAGTTTGACGAGAGTGACAAGACCAAGGAGAAGCGGGAGGGCCTGGAGAAGGAGTATGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTGAAGGACAAGATCGAGAAGGCTGTGCTGTCCCAGAGGCTGACCAACTCTCCCTGTGCCCTGGTAGCCAGCCAGTACGGCTGGTCCGGTAACATGGAAAGGATCATGAAGGCACAGGCCTACCAGACCGGAAAAGACATATCCACAAATTATTATGCAAGCCAGAAGAAAACACTCGAGATCAACCCCAAACACCCTCTGATTAAAGAAATGTTGAAGAGAATAAATGATAATGCAGAGGACCAGACTGCCTCGGACCTGGCTGTAGTGCTGTTTGAGACGGCCACACTACGGTCAGGCTACCAGCTGGCTGACACCAAAGCTTATGGAGACAGAATAGAACGCATGCTCCGACTCAGCATGAATGTGGACCTCAATGAAGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGGTTAAAGCAGATGAGGAAGATGAAGATTCGGGAGCCACAGGAAGAGATGAGCTGTGAGACGGCCTgagtgagggggtgggagggaaGGGTGAGGGAGTGAACTGGGGGGCAGAGCTTTGACTGGAACTAGGTCCATCTTCTCTGCTGAAAAGGAGCGGGTGGGTGTTTGGATTTTAGAATCTTCtgattgtttttgtttattttctacATTCCTACATGATTGTAACTGTGTTAATATTTAACCGAGCCGGTTATGGAGTGCTGTCTTCCTGTCACGAGAACATTAAATGTTGCCGGAAAGGCACCTGTGGTGTCTTGTTTAAA
>XM_036957387.1
GAGCAGGTATAGGTCCACTTCATCAATCCACCGCCTCTAAAGGGTGGATCAGATAAAGGAGTCTACAACCACGGACGCACACCGTTTCAAACCTATGCCGGGGTGTAGGAATAAAGTACAATATAGTGAAATACGGGACTAGGACTATAGTGATATTTTTTTTCTATTAAAATGAACCGAATGTGGACAATAGGCCTCTTTTGTGCTCTTCTAGCTTTCAGTTCTGTCAGAGCGGAGGATGAGGTTGACATtgatgggacagtggaggaggacttGGGCAAAAGTAGAGACGGCTCCCGGACAGATGACGAGGTCGTCCAGAGGGAAGAGGAGGCTATCCAGCTTGATGGCCTGAACGCAGCGCAGATAAAGGAAATTCGGGAAAAATCAGAAAAGCATGTCTTCAAGGCCGAGGTGAACAGAATGATGAAGCTCATCATCAACTCCCTGTACAAGAACAAAGAGATCTTCCTGAGGGAACTGATCTCCAACGCTTCCGATGCTCTGGATAAGATCCGGTTGCTGTCCCTGACCAATGACGAGGCACTTACTGGTAACGAGGAGCTGACAGTGAAAATCAAGTCTGACAAGGAGAAGAACATGCTTCACATTACCGACACCGGCATTGGCATGACCAAAGAAGACCTGGTCAGGAACCTCGGCACCATCGCCAAATCCGGCACCAGCGAGTTCCTCAACAAGATGACAGAGATGCAGACCGAGGGCCAGTCAACCTCTGAgctgattggtcagtttggcGTGGGCTTCTACTCTGCGTTCTTGGTGGCTGACAAGGTGATCGTAACCACGAAGCACAACAACGGCACGCAGCACATATGGGAGTCTGACTCCAACGAGTTCTCCGTCATCGAGGACCCCCGCGGGGACACCCTCGGCAGGGGCACCACCATCACTTTGGTGATGAAGGAGGAGGCAACAGACTACTTGGAGCTGGAGACCATCAAGAACCTTGTGAGGAAATACTCCCAGTTCATCAACTTCCCCATCTACGTATGGAGTAGCAAGACTGAGACTGTAGAGGAGCCTATTGATGAGACTGACGCCGATAAGAAGGATGAAGACCACGATGAGgttgaggtggaggaagaggaggaggacaagcCAAAGACGAAGAAGGTGGAGAAGACGGTGTGGGACTGGGAGCTGATGAATGACATCAAGCCCATCTGGCAGAGGCCTGccaaggaggtggaggaggatgagTACAAGGCCTTCTACAAGACCTTCTCCAGGGACACAGACGAGCCCATCTCCCACATCCACTTCACAGCAGAGGGGGAGGTCACCTTCAAGTCCATCCTCTTTGTGCCTGCCGCAGCTCCCCGGGGACTCTTCGACGAGTACGGTTCTAAGAAGAACGACTTCATTAAGCTCTTTGTGCGTAGAGTTTACATCACTGATGACTTCCATGACATGATGCCTAagtacttgaactttgtgaaagGAATGGTTGACTCCGATGACCTTCCTCTGAATGTCTCAAGAGAAACTCTCCAGCAGCACAAACTTCTCAAGGTCATTCGCAAGAAGCTGGTACGCAAGACCCTGGACATGATCAAGAAGATCGCAGAGGAGCAGTACAACGAGAAGTTCTGGAAGGAGTTTGGCACCAACATCAAGCTGGGTGTGATCGAGGACCACTCCAACCGGACCCGTCTGGCCAAGCTGCTGCGTTTCCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAACAGTACGTGGAGAGGATGAAGGAGAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCAGACAAGAGGCCGAGTCGTCTCCCTTCGTGGAGAAGCTGTTGAAAAGGGGTTATGAGGTCATCTACCTGACAGAGCCCGTGGATGAGTACTGTATCCAGGCCCTACCGGAGTTTGATGGCAAGCGCTTCCAGAACGTGGCCAAGGAGGGCGTCAAGTTTGACGAGAGTGACAAGACCAAGGAGAAGCGGGAGGGCCTGGAGAAGGAGTATGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTGAAGGACAAGATCGAGAAGGCTGTGCTGTCCCAGAGGCTGACCAACTCTCCCTGTGCCCTGGTAGCCAGCCAGTACGGCTGGTCCGGTAACATGGAAAGGATCATGAAGGCACAGGCCTACCAGACCGGAAAAGACATATCCACAAATTATTATGCAAGCCAGAAGAAAACACTCGAGATCAACCCCAAACACCCTCTGATTAAAGAAATGTTGAAGAGAATAAATGATAATGCAGAGGACCAGACTGCCTCGGACCTGGCTGTAGTGCTGTTTGAGACGGCCACACTACGGTCAGGCTACCAGCTGGCTGACACCAAAGCTTATGGAGACAGAATAGAACGCATGCTCCGACTCAGCATGAATGTGGACCTCAATGAAGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGCCAGAGGAGGAGGTTAAAGCAGATGAGGAAGATGAAGATTCGGGAGCCACAGGAAGAGATGAGCTGTGAGACGGCCTgagtgagggggtgggagggaaGGGTGAGGGAGTGAACTGGGGGGCAGAGCTTTGACTGGAACTAGGTCCATCTTCTCTGCTGAAAAGGAGCGGGTGGGTGTTTGGATTTTAGAATCTTCtgattgtttttgtttattttctacATTCCTACATGATTGTAACTGTGTTAATATTTAACCGAGCCGGTTATGGAGTGCTGTCTTCCTGTCACGAGAACATTAAATGTTGCCGGAAAGGCACCTGTGGTGTCTTGTTTAAA

Function

NR:

description
endoplasmin-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0035889 otolith tethering biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09487 HSP90B, TRA1; heat shock protein 90kDa beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577266.2 False 2786 mRNA 0.51 17 24366827 24374963
XM_036957389.1 False 2797 mRNA 0.51 17 24366828 24374963
XM_036957387.1 True 2808 mRNA 0.51 17 24366829 24374963

Neighbor

gene id symbol gene type direction distance location
LOC110500097 LOC106576231 coding upstream 45115 24315919 ~ 24321712 (+)
adm2a LOC106609361 coding upstream 71969 24277797 ~ 24294858 (+)
LOC110500095 LOC106609365 coding upstream 176119 24176179 ~ 24190708 (+)
LOC110500093 LOC106609369 coding upstream 208987 24147043 ~ 24157840 (+)
rpap3 LOC106609438 coding upstream 380924 23976673 ~ 23985903 (+)
trnay-gua-63 NA coding downstream 7574 24382537 ~ 24382624 (+)
trnay-gua-64 NA coding downstream 8185 24383148 ~ 24383235 (+)
LOC110500102 ankrd16 coding downstream 8478 24383441 ~ 24384781 (+)
LOC110500103 LOC106609353 coding downstream 14349 24389312 ~ 24401010 (+)
asb13a.1 LOC106609354 coding downstream 26195 24401158 ~ 24405538 (+)
G1719514 NA non-coding upstream 761 24365833 ~ 24366066 (+)
G1719512 LOC106576230 non-coding upstream 4365 24362118 ~ 24362462 (+)
G1719511 NA non-coding upstream 4937 24361643 ~ 24361890 (+)
G1719508 NA non-coding upstream 15277 24351194 ~ 24351550 (+)
G1719507 NA non-coding upstream 15820 24350695 ~ 24351007 (+)
G1719529 NA non-coding downstream 28098 24403061 ~ 24403271 (+)
G1719520 NA non-coding downstream 33299 24408262 ~ 24408830 (+)
G1719524 NA non-coding downstream 36547 24411510 ~ 24412412 (+)
asb13a.2 LOC106609355 non-coding downstream 38903 24405619 ~ 24414681 (+)
G1719596 NA non-coding downstream 43048 24418011 ~ 24418237 (+)
G1719268 NA other upstream 230504 24135764 ~ 24136323 (+)
G1719225 NA other upstream 292379 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1110015 23256126 ~ 23256812 (+)
G1720836 NA other downstream 1236853 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1261372 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1663339 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1954811 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2446684 26821647 ~ 26821935 (+)

Expression


Co-expression Network