asb13a.2 (LOC106609355)


Basic Information

Item Value
gene id asb13a.2
gene name LOC106609355
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24405619 ~ 24414681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577273.2
AGGTCATGTCAAAATCAGTCACGTGATGTGTCAGTGCCGCATGTAAACACAGCTCAAATGTGGTTGTTTACTTCTCTTGGGACGTAATTTACCGTTTTTCTACATAAAACGGGATTTGACCAAATGATGGAGGTTGAAACTGCCAGACCGTATTTCTTTGGAGACATAGGCTGCTGGTCAGAGAGGACCGAGGTGCACGAGGCGGCCTCCGAGGGACATGCTGCCCAGCTGCAGCAACTCATCCAGAGAGGAGCCTCTGTCAACATAGTGGCTGTGGACTCCATCACCCCCCTCCATGAGGCATGTGAAAGGGGGCAGACCCAATGTGTCAGGCTGCTACTGGATGCTGGAGCACAGGTGGATGCCCGTAACACGGACGGTAGCACCCCTCTGTGTGATGCCTGCTCGGTTGGGAGCTTTGACTGTGTGAGGATGCTGCTGGAGCATGGGGCCAATGTGAACCCCACCCTCTCTTCCCGGACCACCTCACCCCTACACAAAGCTTGCATGGGGGGTAATGCTGACGTTGTGAAGATCATGATCGCTAAAGGTGCCAGTCTGGAGGCATATGACCTGTACTATGGGACCCCATTGCATGTGGCGTGTGCCAACGACCACACGGCCTGTGTCAAGGCGCTACTCAACGCAGGTGCCAAAGTGAATTATGCTCGGCTGCACAAGACGGCCCTGCACCGTGCTGCTAAAGTGAAGAGTGTTGACATGATCGACGTGCTGGTGGAGTTTGGGGCGAACATCTACGCCAAAGACAAAAACGATAAGAAGCCCATTGACTACATCGATCCCGGTTCTCCCGCTGCACTCTGCTTAGAGTTTTATGAAAGTACTCCATTGAGTCTGCAGCAGCTGAGCAGAGTGACCCTGAGGGCGATGCTGGGTAGCAGAGCTCTGGAGGTCGTAGTTCAACTGGACATACCAAAGCAAATCATTCGCTTCCTATGTTACCACTGACCCTGATACCATTATCTTACTAAGGTGAAGGAAGGAAGCTCAGAGACTGAAaccttaaaaaaaataatcacaaTTATCAAAATGCTACAGTCTGAACCTTAGATGCCACTAGATTAGATTCATAAAAATAATATGCATACAGCAAGGCACAGGTTTCCAAACAAGCAGTATTTTTAAGCGGAGCACTTTTGTGCCATATCATCACATTAGATACATATTTAAAGAACAGGAGCATAAGGAGGTTTTAATGGGGACTTTTTACATGCAGTTTATTCCTTGAACTCCCATATCTTGTAAACCTACATAAAAGACAAATGGAGGCCCTCAGGGAAAacaagggagaggggggagaggagaaaataaatggaggagaggaagtgatTTTGGCAGCTGATCCTGTCCACTCTGCAACACCGTCTGTGGACACTACACCAGCATCTTAGACGCCATGACAACGCGGCAACAACACAACCGTTAGCAACACATCCCAGATCTCCGGTACATCCTCAGGGATGAGAAACGATGTTGCAGCAGGAGGATGAGCGGCGTTCCCGTTGACACTCTCCAGATGTCAGTGTGTATCCCAGATTCCTCCCTGACATCGGAACGGAAACCACACCTGACAACGGGATGTGTTTGAGGCGGACGTGGAATCCAGGCAGCAGAGAAACACCATGGGAAACGATCCTGCTTTTTTACTGTTGGTGCCTCTGATCTGTTGCATCCACTATAGCTGAGACGGCCCAGGCCTGAATATGGTGTCTGTTTTTGGggtgtgtaatgagtgtgtgtggatTCCTCAGAGTTGCACAATGTCTCTGGTCACTGTATTGATACTGTTATTATTTGACATAACCCGTCTTAATAATGGGAACAGAGGAATATGTCTTATCAACATGATGTCTATGTAAGGCAACGTGCATTAATCACAAAGTGTGTTTCTAAAATATTATGACCTATTTAATATTTCCCCACTGGCCACACGACCTCATTTCAgtgtgggtaatatttggttgagatgttaatcaatgagattacaacctatattaACCCACTCAAATTAAATTCCAACATTTTTAAAGCACAACAAAgctcaaatgggaatacaatgtcagctATTGATAAATCACTGTGCTTAATCTAATAGCAGGACCATATAACCTGGATTTCAGTTGAGATGACATCAAAACTACACAGGTGCAAGAGATCGATGCCATTTGAGATTCTGTGCAGATTATTACAGAagttgtgaagatctccacagacctgtgatCTATGTACGCTTTCTTGCACATACACGCTTTATAtggttacagtaacctcaaaatgtggtcatggatgtgttactcactTTTCAAGTTTGAATGTTACATTCGTTTTTTTAAGATAGTCTAAAGTTAAGGCgttttactgtattacaaaagtaatattgaattgtgttttgttgacaacgcaaccaaatatcaacattttaaaGGAGATTTATCTTcagcttggatagttccatctggcccactgacttagtctggctttaattccagtttgtcttcAAATTAATTATTgctatgttggattcacatctccatctcaaccaaaaacaaatgtgttttccatatagattccacgtcacaatgtTGACAAATTATGTTGAAAAAAATGATTAAAAGTCCAGCGGGAGTGACTATCCTCTCAGATAATGCATCTGTTTAACCCCTTTTGTGAACTGTCAAGTTTTTGAATGCGCTTGAAAAGCAAAATATGCACTCGAAAAGcaacttcttagggatagcccccttttttttttttccaattttcgcctaaatgacatacccaaatctaactgcctgtagctc
>XM_021577275.2
AGGTCATGTCAAAATCAGTCACGTGATGTGTCAGTGCCGCATGTAAACACAGCTCAAATGTGGTTGTTTACTTCTCTTGGGACGTAATTTACCGTTTTTCTACATAAAACGGGATTTGACCAAATGATGGAGGTTGAAACTGCCAGACCGTATTTCTTTGGAGACATAGGCTGCTGGTCAGAGAGGACCGAGGTGCACGAGGCGGCCTCCGAGGGACATGCTGCCCAGCTGCAGCAACTCATCCAGAGAGGAGCCTCTGTCAACATAGTGGCTGTGGACTCCATCACCCCCCTCCATGAGGCATGTGAAAGGGGGCAGACCCAATGTGTCAGGCTGCTACTGGATGCTGGAGCACAGGTGGATGCCCGTAACACGGACGGTAGCACCCCTCTGTGTGATGCCTGCTCGGTTGGGAGCTTTGACTGTGTGAGGATGCTGCTGGAGCATGGGGCCAATGTGAACCCCACCCTCTCTTCCCGGACCACCTCACCCCTACACAAAGCTTGCATGGGGGGTAATGCTGACGTTGTGAAGATCATGATCGCTAAAGGTGCCAGTCTGGAGGCATATGACCTGTACTATGGGACCCCATTGCATGTGGCGTGTGCCAACGACCACACGGCCTGTGTCAAGGCGCTACTCAACGCAGGTGCCAAAGTGAATTATGCTCGGCTGCACAAGACGGCCCTGCACCGTGCTGCTAAAGTGAAGAGTGTTGACATGATCGACGTGCTGGTGGAGTTTGGGGCGAACATCTACGCCAAAGACAAAAACGATAAGAAGCCCATTGACTACATCGATCCCGGTTCTCCCGCTGCACTCTGCTTAGAGTTTTATGAAAtttgtgtatttgcatgtgttttatttcaggaaatggcttcctgaaatccctcaagcagct
>XM_021577274.2
AGGTCATGTCAAAATCAGTCACGTGATGTGTCAGTGCCGCATGTAAACACAGCTCAAATGTGGTTGTTTACTTCTCTTGGGACGTAATTTACCGTTTTTCTACATAAAACGGGATTTGACCAAATGATGGAGGTTGAAACTGCCAGACCGTATTTCTTTGGAGACATAGGCTGCTGGTCAGAGAGGACCGAGGTGCACGAGGCGGCCTCCGAGGGACATGCTGCCCAGCTGCAGCAACTCATCCAGAGAGGAGCCTCTGTCAACATAGTGGCTGTGGACTCCATCACCCCCCTCCATGAGGCATGTGAAAGGGGGCAGACCCAATGTGTCAGGCTGCTACTGGATGCTGGAGCACAGGTGGATGCCCGTAACACGGACGGTAGCACCCCTCTGTGTGATGCCTGCTCGGTTGGGAGCTTTGACTGTGTGAGGATGCTGCTGGAGCATGGGGCCAATGTGAACCCCACCCTCTCTTCCCGGACCACCTCACCCCTACACAAAGCTTGCATGGGGGGTAATGCTGACGTTGTGAAGATCATGATCGCTAAAGGTGCCAGTCTGGAGGCATATGACCTGTACTATGGGACCCCATTGCATGTGGCGTGTGCCAACGACCACACGGCCTGTGTCAAGGCGCTACTCAACGCAGGTGCCAAAGTGAATTATGCTCGGCTGCACAAGACGGCCCTGCACCGTGCTGCTAAAGTGAAGAGTGTTGACATGATCGACGTGCTGGTGGAGTTTGGGGCGAACATCTACGCCAAAGACAAAAACGATAAGAAGCCCATTGACTACATCGATCCCGGTTCTCCCGCTGCACTCTGCTTAGAGTTTTATGAAAgaaatggcttcctgaaatccctcaagcagctgattggtcgactccagggctaattggagagctgaccccgccccctcgtcaagacac
>TU1970013
TGTTTATGGCCTTGTCTGAAACCACAGCTCAGAAGTCACGTGGGACCTCTTCAGCAGTTCACTGCAGTATAGCTACAACAGATTGGTACTCAACATGGTTAGAATGATCAAGTCTTTAGCTTTAATACCTTTTTAGCCTGAAGTACAAGCACCATCTAGCAAGTCCacctgttacgttccccagtttatgtgttgtagtttgtgtatttgcatgtgttttatttcaggaaatggcttcctgaaatccctcaagcagctgattggtcgactccagggctaattggagagctgaccccgccccctcgtcaagacacagctgtctccagttacattcattctgaagctatataaaagccagtgttctgttcaggagagagagattttggaggtagggattactgagagagatttgctgggaggtcattgcaaagcgattgtttgtgatagagagattTGCTTGGAGTTCATtgcagagagattttgctagaggttgattttgatgggagttcattgctgggaagttggtatgttttgtgagtttgttgctcagatagagcttatttgatgtactttgtttcttagtttgtttgtgaaattgtttaatattctgtttcatttgttcccagggggaaaggggaaggcaccttgggagtgcttaggcaagaggcccgcgggcatacatatacccgtagtatattcactgtctaggcacactgggtaagacctgggcggaccaccccctgtattttggttagggcaccagttGGTGCTAAATTACGTAAAAGtggttaggcaggtaagataaggagagggggg

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577273.2 False 2822 mRNA 0.44 6 24405619 24411071
XM_021577275.2 False 901 mRNA 0.52 6 24405619 24414123
XM_021577274.2 False 928 mRNA 0.54 6 24405619 24414179
TU1970013 True 816 lncRNA 0.44 1 24413866 24414681

Neighbor

gene id symbol gene type direction distance location
asb13a.1 LOC106609354 coding upstream 81 24401158 ~ 24405538 (+)
LOC110500103 LOC106609353 coding upstream 4609 24389312 ~ 24401010 (+)
LOC110500102 ankrd16 coding upstream 20838 24383441 ~ 24384781 (+)
trnay-gua-64 NA coding upstream 22384 24383148 ~ 24383235 (+)
trnay-gua-63 NA coding upstream 22995 24382537 ~ 24382624 (+)
mkln1 LOC106609349 coding downstream 161629 24575808 ~ 24603395 (+)
LOC110500922 LOC106576224 coding downstream 220498 24634677 ~ 24637555 (+)
LOC110501038 NA coding downstream 239048 24653227 ~ 24657324 (+)
LOC110500114 LOC106576221 coding downstream 245648 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding downstream 306789 24720968 ~ 24723685 (+)
G1719529 NA non-coding upstream 2348 24403061 ~ 24403271 (+)
G1719514 NA non-coding upstream 39553 24365833 ~ 24366066 (+)
G1719512 LOC106576230 non-coding upstream 43157 24362118 ~ 24362462 (+)
G1719511 NA non-coding upstream 43729 24361643 ~ 24361890 (+)
G1719508 NA non-coding upstream 54069 24351194 ~ 24351550 (+)
G1719596 NA non-coding downstream 3832 24418011 ~ 24418237 (+)
G1719612 NA non-coding downstream 18865 24433044 ~ 24433314 (+)
G1719615 NA non-coding downstream 21465 24435644 ~ 24436052 (+)
G1719632 NA non-coding downstream 41147 24455326 ~ 24455621 (+)
G1719634 LOC107575789 non-coding downstream 43468 24457647 ~ 24458033 (+)
LOC110500097 LOC106576231 other upstream 88081 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 110822 24277797 ~ 24294858 (+)
G1719268 NA other upstream 269296 24135764 ~ 24136323 (+)
G1719225 NA other upstream 331171 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1148807 23256126 ~ 23256812 (+)
G1720836 NA other downstream 1197637 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1222156 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1624123 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1915595 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2407468 26821647 ~ 26821935 (+)
G1719524 NA non-coding upstream 1454 24411510 ~ 24412412 (+)
G1719520 NA non-coding upstream 5036 24408262 ~ 24408830 (+)

Expression


Co-expression Network