LOC110500110 (podxl)


Basic Information

Item Value
gene id LOC110500110
gene name podxl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24604892 ~ 24622595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957393.1
AGTGCCATGGGCCTGTGAGTAACAGCTGAACACTTGTAAAGAAGACTGGGGTCTGGACTGGCCACGGGGCTTGCACTTTGAAAGCACAATACGTTTTCAAGCCACTCCGGGAGAGGGAGCCAGCAACGACAACACAATCAGTGCAGCCAAGGAGACCGGTTAAAAACTTTCCCCCAAATTCCCGActcagagagggggagaaaagaagGGGAGAAGCGACAAACAAAAGCATTCTTAGCTTTCAGCAAAACAATAACTTTGGGAAAATAATTTActtcaaatacaaattcaatgaGATAGGCGTGACGGACCGGCGTCTCCAGCAAGAATCCGCTacttttattcaacattctgaatACCTAAAACCACGGATTGAGTGCTGCAGCAACACTGAATGAAACAAAGtttcgtaaaaaaaaaaaacagaatggaAACGAAAATGCGAATCACGTGGGCACTTCTTCCACTTGGTTTTCTACTTCACTGTACTCATGCTGATCCAATACAAACAACCTTTATCTCTTCGGCCCCCAACTCCACACAAAATGGACCCACCCATACAGTTACCTCCTCCAGTCTAATCAATGGGCCCGGGACTACACTAGCCGACCTTACCGTACCAAGTGGGGCGGCGTTGAGCACCTTTACCGCTGGGAGGTCCAGTGGTAATGTGGAGTCCACCACCATGACTACTGCTGGACTGGACTCCACTAGCTCCACCGGAACCCACACCCAGACCCCCACTAGCTCCACTGGAACCGACGCCCAGACCACCACTAGCTTCACAGGAACCGACGCCCAGACCACCACTAGCTCCACCGGAACCGACGCCCAGAACACCACTAGCTCCACCGGAACCGACGCCCAGACCATCACTAGCTCCACCGGAACCGACGCCCAGACCACCACTAGCTCCACCGGAACCCACACTACCGTGCAATTCACTAGCTCCTCAGGAACCCTCTCCCAGACCACCACTAGCTCCACCGGAACCGACGCCCAGAACACCACTAGCTCCACCGGAACCGACGCCCAGACCACCACTAGCTCCACCGGAACCAACGCCCAGAACACCACTAGCTCCACCGGAACCGACGCCCAGACCACCACTAGCTCCTCAGGAACCCACACCCAGACCACCACTAGCTCCTCAGGAACCCACACCCAGACCACCACTAGCTCCGCCGGAACGCCTCACTTCACTGCAGTCACACCGGTGGGTAGGCGACATACTCCAATCCTTACAACCCCATGGTCAAGGTCGTCCTCTCCATCCCAGCAACCTTCCACATCCAGCCCTGTGGGTTCAGGAAGCAGTTTTGCTATCACCACAACCCGTGCACAGGGAGGAATGGTGTTAACAACCATGGCTGAGACTACAACCACGACGGCCACTACCACAAGTCCTCCCATGAGCTTTATGTTTGTCATGTCCAAAAGAAATGAAGAGAATCATGAGAAGAAGGACCTGGAGGCGCTGTGTCGACACCTGATGTCTCAAATGCACGACGCTAACTGTACTCTGGCTGCGAGAGAGAACAACGGACAAACCACCGTTGACAGCGTGGTAATTACCGGCAAAGTGGACAATGCTGTCGTCCAGCAATACTATGAGGAAATCACCAGAAAACAAAGTGACAACATGACCCTGATTGCCATTTTGGCGTCCTGCGGAGCTCTGCTGGCCATGATTGTAGGCTTCGCCCTTTACGCCGCATACCACCGCAAGTCCTATCGGAAGAACCACCAACAACACCTGACAGAGGAGATGCAGACGGTGGAGAACGGTTACCACGACAACCCCACGTTGGAGGTGATGGAGGTGCAGCAGGAGATGCAGGAGAAGAAGGTGGCCCTGAATGGAGAGTTCAACGACAGCTGGATTGTCCCCATCGACAACCTGCTCAAAGAAGACATGCCAGATGAGGAGGACACTCACCTGTAGAGGGGGACCGGAACAGACAGGGGTGCTACTATATTCCCTCGACCAACTGACTCTCCCTTCCCTGCACCGTTACAAGGGCCCTGTTTAGTAGAGGGTTCTAGCTCCAAACGTTGCAGGTAGAAATGTATTCTATATAGAATATATACAACCTTAAATAATGGGATTTGAGAAATCGCACAATTGTGACAGTTCTATGCAATGCATTTCTATCCGCAACACTTTTAATGTTCCTCCCCATTGAACCAGACCCAaggcaacaacacacagacaccaccTGACAAATCTGGAGAAAATAACACCCAGAGGATGAAACTGGAAACCCATCCGGCCTAAACGGGTGTCTGAGTCCCATCGCTGTGGCCATGGAAAAGTAACAGGCCATTTGGAGAATACTACACCAATCAACATTGTGCCTAGTTTTAGGAGATATTCAATAAATATTTGGGAAATGTAACTCTCAAACATACACAATCCCATTTTAAGTGCCATTGAGTGTTTAAGATACTTGATGTACCGCTACATAGTTATTGATTTAATTGGGAAAACCAAACACTCAAACCACCAATATTTCAGGGTGGAGTGTATGAACTAAAATCTGCATGTTCTTTATGCTGTAATCAATGTAATCCACAAAAGTGCATTGAATTGTACACTTGAGCACCTGTACATAGTATTTTCTTATATTTTCAGAGAAAATGGAAGCTGAAACTTTGTAATACTGTAACACTACTTGCCTTTATGGTTAAATCTCAATAGTATTGATTTAAAGAAAA

Function

symbol description
podxl Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be located in several cellular components, including filopodium; lamellipodium; and ruffle. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).

NR:

description
podocalyxin-like

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957393.1 True 2718 mRNA 0.49 8 24604892 24622595
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500107 NA coding downstream 70142 24521804 ~ 24534750 (-)
LOC110500106 LOC106609352 coding downstream 87688 24481140 ~ 24517204 (-)
LOC110500100 glt8d2 coding downstream 223443 24375022 ~ 24381449 (-)
LOC110500098 LOC106609359 coding downstream 274745 24321802 ~ 24330147 (-)
LOC110500094 LOC106609364 coding downstream 337728 24191659 ~ 24267164 (-)
LOC110500111 LOC106609346 coding upstream 17495 24640090 ~ 24643864 (-)
LOC110500112 LOC106609347 coding upstream 21360 24643955 ~ 24647220 (-)
slc41a2b LOC106609341 coding upstream 132186 24754781 ~ 24787447 (-)
LOC110500116 LOC106609340 coding upstream 171011 24793606 ~ 24857940 (-)
LOC110501039 LOC106609337 coding upstream 252919 24875385 ~ 25103277 (-)
G1720051 NA non-coding downstream 138364 24466099 ~ 24466528 (-)
G1720042 NA non-coding downstream 157382 24447268 ~ 24447510 (-)
G1720033 NA non-coding downstream 167356 24437083 ~ 24437536 (-)
G1720030 NA non-coding downstream 170090 24434552 ~ 24434802 (-)
G1720029 NA non-coding downstream 170922 24433715 ~ 24433970 (-)
G1720156 NA non-coding upstream 66811 24689406 ~ 24692025 (-)
G1720172 NA non-coding upstream 86786 24709381 ~ 24717413 (-)
G1720173 NA non-coding upstream 90980 24713575 ~ 24713976 (-)
G1720174 NA non-coding upstream 91626 24714221 ~ 24717132 (-)
G1720186 NA non-coding upstream 123296 24745891 ~ 24746117 (-)
G1719407 NA other downstream 459544 24137726 ~ 24145348 (-)
LOC110500092 LOC106609371 other downstream 538542 24060587 ~ 24066411 (-)
LOC110500089 LOC106609371 other downstream 561264 24037871 ~ 24043628 (-)
G1718713 NA other downstream 1022042 23582575 ~ 23582850 (-)
LOC110500069 LOC106609440 other downstream 1028142 23574474 ~ 23586547 (-)
LOC110500148 LOC106609286 other upstream 1679147 26301474 ~ 26310640 (-)
LOC110501044 LOC106609327 other upstream 3302822 27924301 ~ 27929621 (-)
LOC110501045 LOC106609328 other upstream 3460218 28002248 ~ 28103013 (-)
G1723535 NA other upstream 3607928 28230523 ~ 28230880 (-)
G1723713 utp20 other upstream 3747023 28369618 ~ 28371062 (-)

Expression

LOC110500110(podxl) Expression in all Baseline Samples

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LOC110500110(podxl) Expression in each Bioproject

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LOC110500110(podxl) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network