LOC110501038


Basic Information

Item Value
gene id LOC110501038
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24653227 ~ 24657324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956500.1
ATGGATCAAACCAGGCTGCCCTGTGGACAGTATGACTATGACCTGCTGGTCATTGGAGGGGGGTCTGGAGGCCTGGCTGTGGCCAAGGTACTGCTGGCTGCAGGAAGAGACACCTGTACCAGTGACATTGGTCTTGACCATGTTGGGGTTAAAAACAATCAGGACACTGGCAAGATCTCTGTGAATGAGAAGGAGCAGAGCAGTGTGGGATATGTGTATGCAATGGGGGCGGTACAGGAGGGTCGTCCATTGACCACAGCCCTCTCCGTGCAGGCAGGACGACTCCTCTACGGAGGGCACAGTACCATGTGTGACTACAGTAACATCCCCACGGTGATGTTACCTCCCATGAAGTATTGTACCTGTGGGCTGTCAGAGGAGAACGCCATTCTCACGTTTGGAGAGGACAATGTGGAGGTGTACCGTAGCTACTACTGGCCATTGGAGTGGACGGTACCTAGAAGGGAAAGATGCTATGCTAAAGTCATCTGCCACATACCTGACtatattatagtgtgtgtgtatgtgtgtgttctgtcacCTCCACAGGAGAATGTGGTAGGTCTCCATGTGATGGGGCCCAGCGCAGGGGAAGTGTTCCAGGGCTTTGCTGTGGCTCTGAGGTGTGGTCTGATCAAACAGCAGCTGGACACCCCCGTGAGACTCCACCCTGTTTGTGCCCAGGTGTTGACCAACCTGATAGTAACTCAGCGTGCCACTGATGCCATGATGGTCAGAGGGAACTCCTGACGTTAGCCCCCTGCTGTCAATCACGGTTGCCTGTCAGAACATCCTCATTGTTGAGTGACGGGCAGCAGGGCAGCTATCAACCGTCCAATGACATCTGAGTCCGGAGCCTGGTTGACAGGTGGGCGGGGACTGacactgctgctgctggcccTAGACACTGGGGTCACTTCCtgtttacatgttttttttcttctcttttaaACTCTTTCTTTTGCCATATTAATGAACCAAACTTTGATATTAACTTGCAGAGGCACCTCTGACACCTTTCAGCTGTGAACTCTGCAGCTCATATGAATACTCATTAGTCTGTGATTGTACTGACTTTTAAACTGTCAGTGATTGTACTGACAGTTTAATGGCTGCTGAGTAGCGATAAAGCCCTGTTTGAGCATTTAAATACTGTAGAAACACAGTTCATGCTTTTATGCAGGGTTCTATACCTATGGACTGAAGGGATTTAAGTGccgtaatgtaatgtaatgaacagATCGAGATTAAAGTATTA

Function

NR:

description
thioredoxin reductase 1, cytoplasmic-like

GO:

id name namespace
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956500.1 True 1258 mRNA 0.49 7 24653227 24657324

Neighbor

gene id symbol gene type direction distance location
LOC110500922 LOC106576224 coding upstream 15672 24634677 ~ 24637555 (+)
mkln1 LOC106609349 coding upstream 49832 24575808 ~ 24603395 (+)
asb13a.2 LOC106609355 coding upstream 239048 24405619 ~ 24414681 (+)
asb13a.1 LOC106609354 coding upstream 247689 24401158 ~ 24405538 (+)
LOC110500103 LOC106609353 coding upstream 252217 24389312 ~ 24401010 (+)
LOC110500114 LOC106576221 coding downstream 2503 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding downstream 63644 24720968 ~ 24723685 (+)
LOC110500118 LOC106609342 coding downstream 130156 24787480 ~ 24791567 (+)
LOC110500123 NA coding downstream 1111562 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 1214497 25871821 ~ 25875841 (+)
G1719695 NA non-coding upstream 58837 24530156 ~ 24594390 (+)
G1719705 NA non-coding upstream 87887 24564257 ~ 24565340 (+)
G1719657 NA non-coding upstream 157703 24495298 ~ 24495524 (+)
G1719647 LOC106609352 non-coding upstream 166932 24485663 ~ 24486295 (+)
G1719644 NA non-coding upstream 179868 24473049 ~ 24473359 (+)
G1719795 NA non-coding downstream 52591 24709915 ~ 24717545 (+)
G1719811 NA non-coding downstream 98017 24755341 ~ 24756316 (+)
G1719862 NA non-coding downstream 175076 24832400 ~ 24833158 (+)
G1719826 NA non-coding downstream 218215 24875539 ~ 24935910 (+)
LOC110500097 LOC106576231 other upstream 335689 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 358430 24277797 ~ 24294858 (+)
G1719268 NA other upstream 516904 24135764 ~ 24136323 (+)
G1719225 NA other upstream 578779 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1396415 23256126 ~ 23256812 (+)
G1720836 NA other downstream 954492 25611816 ~ 25612268 (+)
G1720853 NA other downstream 979011 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1380978 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1672450 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2164323 26821647 ~ 26821935 (+)

Expression


Co-expression Network