LOC110500113 (LOC106609343)


Basic Information

Item Value
gene id LOC110500113
gene name LOC106609343
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24720968 ~ 24723685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957398.1
GAAACATTGTGATTCTAGGAAGAGTAATGTAAAAGCTGTAGTGACTTTAGTCCTCGTTTATTCAACACTGTTTTAATCAATATGACGATCAGTTACAGCTCAGCCGTGTAAAGGGTTAACTGTTCCAGGAAGAGAATCACACAGCAGTATCTGGTGGGGAGGAGCATCACTATCGTCACTTTGTTGAACTGAAACTAAAGTAGAGAGACGTACAGTATATTGTTTACGGGACCAAAATCTCCAGCACTTCAGAAATCTACATGTTCAGGCTATACGCTTACTCTCCTACCCTTTGACACCACAAACAGAAAGGACAGAGATCCACAAAAACATCCAGATATGGCCACCTCCTGCAGTCTCCTGTCTGAAGAGCAGTTCCTGTGTTCTATCTGTCTGGATGTGTTCACTGAGCCCGTCTCTACTTCATGTGGACACAACTTCTGCAAGGCCTGTATCACAAAGTACTGGGATAGGGATGACCTGTGCCAGTGTCCCATGTGTAAAAATACATTCGATAAGAGACCAGATCTGTTCGTCAACACTTTCATTTCTGAGATGGCTGctcagttcagacagacagtTGAAGTGAAAGCTACCAGCAGCCCGGACCAATGCTCTGCCATGATAGTAGAAGTGTCCTGTGACATCTGCACTGGGATGAAGCTCAAGGCCCTGAAGTCCTGTCTGGTGTGTCAGAcctcttactgtgagactcaTCTGGAGCCTCATCAGAGAGTCGCAGCCTTAAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGGAAGACAGGATGTGTAGGAAGCATGAGAGACCTCTAGAGCTGTTCTGTAGGAGTGACCAGACATGTCTTTGTGTCTTGTGCTTGAAAGCAGACCACATGACTCATGACACTGTCCCTCTAGAGGAAGAGTATGGAGAGAGGAAGGCTCAGTTGGGGAAGACTGAGGCAGAAGTGCAGCAGATGATCCAGGAGAGACTGAAGAAGGTTCAGGAGATCAAACACTCAGTAGATCTCagcaagagagaggcagagagagagagatcagacagtgtacaggtCTTCACTGCTCTGGTTCGCTCCATTGAGAGAAGTCAGGCTGAGCTCATTGAGGTGATTGAGGAGAAACAGAAAGCAGCAGAGAGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagaagcactgagctggagcagctctcacacactgaggaccacctccacctcctacaGAGCTTTCCATCCCTCTGCACCCCTCCAGACACCAAggactggtctgagatcagtgtTCAGAGTGATATGTGTGTGGGGACTGTGAGGAGAGCTGTGTCTCAACTGGAGGAGACACtgaataaagagatggagaagctGCCTGAAGTCAAACTGAAGAGGATTCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCACATCCCTGCCTCATCCTGTCTGAAGATGGGACACAGGTGAGAGATGGAAACACAGAGCAGGATCTCCCAGACAAGCCAGTTAGGTTTTCCAAATGTCTCTGTATCTTGGGAAAGGAGGGCTTTTCCTCAGGGAGATTCTACTATGAGGTGATGGTTAAGGGAAATACTGAATGGGTTTTAGGAGTGGCCAGAGAGTCCATCGTCAAGAAGGGGGATATCACACTGAGCcctgagaatggatactggacTGTATGGCTGAGAAAAGGAAATGAGTACGAGGCTCTTTCTAGCACCAGTGTCCTGCTCTCCCTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCCTTTTAtgatgtggaggccaggtctctTATCTACTCTTTCACTGGCTGCACCTTCACAGAGAAACTCTATCCATTCTTCAGCCCCTCTAGCAATGATGGTGGTAAAAACTCTGCCCCTATGATCATCTCTCCTGTCAATCACACAACATGACGTTTAACCTGAAAATGTACTGAAATGTGTCAATTTCGTCTGTTGTCCTACATCAGAGAACATTTCAATGTAATATTCCTACTGACATGGTTGTTGTTTGTTATCATCAGCATCATGTCAGTCTGTTAGACATGATGAGTAGCCTACGGTATGCAGCAGCATTGTAAGATATGAAAACATCTCTCCAGGCTCATACCGAGGTATGATTCATATCTGGGAGTTACATTTCAGAGGAATTTCTGATCATGAGATAATTCAAGcaatatgtttgttttttaagcTCATGTATTGTTTGCACTGTATATCTCTGTGGATCCACCTATAATGAACTGGGATGTGCCTGGAGTAAAATTCAGGATTTTTAGAAAATGAAATCCAGTTGAATATTGACCAAATTGGAATTCTTTCTCGTAGTCCTGCTGTCCCCGATGTTTACAGTAGTGATGGCTATGACATCCGTTATACAAATAAAGTCACCTGTTA

Function

NR:

description
zinc finger protein RFP-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957398.1 True 2463 mRNA 0.46 2 24720968 24723685

Neighbor

gene id symbol gene type direction distance location
LOC110501038 NA coding upstream 63644 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 83413 24634677 ~ 24637555 (+)
mkln1 LOC106609349 coding upstream 117573 24575808 ~ 24603395 (+)
asb13a.2 LOC106609355 coding upstream 306789 24405619 ~ 24414681 (+)
asb13a.1 LOC106609354 coding upstream 315430 24401158 ~ 24405538 (+)
LOC110500118 LOC106609342 coding downstream 63795 24787480 ~ 24791567 (+)
LOC110500123 NA coding downstream 1045201 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 1148136 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 1168188 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 1207905 25931590 ~ 25977279 (+)
G1719795 NA non-coding upstream 3423 24709915 ~ 24717545 (+)
G1719695 NA non-coding upstream 126578 24530156 ~ 24594390 (+)
G1719705 NA non-coding upstream 155628 24564257 ~ 24565340 (+)
G1719657 NA non-coding upstream 225444 24495298 ~ 24495524 (+)
G1719647 LOC106609352 non-coding upstream 234673 24485663 ~ 24486295 (+)
LOC110500114 LOC106576221 non-coding downstream 19034 24659827 ~ 24744884 (+)
G1719811 NA non-coding downstream 31656 24755341 ~ 24756316 (+)
G1719862 NA non-coding downstream 108715 24832400 ~ 24833158 (+)
G1719826 NA non-coding downstream 151854 24875539 ~ 24935910 (+)
G1719893 NA non-coding downstream 159259 24882944 ~ 24883900 (+)
LOC110500097 LOC106576231 other upstream 403430 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 426171 24277797 ~ 24294858 (+)
G1719268 NA other upstream 584645 24135764 ~ 24136323 (+)
G1719225 NA other upstream 646520 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1464156 23256126 ~ 23256812 (+)
G1720836 NA other downstream 888131 25611816 ~ 25612268 (+)
G1720853 NA other downstream 912650 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1314617 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1606089 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2097962 26821647 ~ 26821935 (+)

Expression


Co-expression Network