LOC110500118 (LOC106609342)


Basic Information

Item Value
gene id LOC110500118
gene name LOC106609342
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24787480 ~ 24791567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577294.2
CCTTATATAATAAATGTTGAACATTTACGTCTAGGATATCAAATAGGCACTGAAGCCTATGGTTAGGACCAAGAAATGTGAAATATGAATTCACACATTTTGATAGTTTGTGATTTTGCATTGATGCGCTTTTTATAAAACAGCTATTCTGAAATTGTATTGTGTTATGACATAATAAACGCAGTAGTTGCAGTCAATATACAGTTAATTATCCATTCACCCCGCAGGGAAGTATGATAATGTTTCCGTTTTGAGTTTTGTCACCCCGAAACAGTAGAAGGCGCTATACACCAATGTTGGTGTTCATCCTATGACCCAAATGTTGACGCTAGCACAGTCAAAACATGGCTCGAAATTTGTTTTATCGTGCTGCTAATATTGTCCAACTCAGCAGGTTTACACTTATAGTTGGGTCAAAGTCACTTTGTACGCAAATTCCAGCGGAGCCACTGACTGTCAGACAGCAAAACAATGGAATAAGGAGTATAACCTTGAACAACCCGAAGAAGAGGAATGCCCTGTCTCTGTCCATGCTGGAATCACTAAGAGGCAACATCCTGGCTGACATCGACGACCTCAGAGTCATCGTCATATCAGCTAAGGGTCCAGTGTTCTCCTCTGGGCATGACCTGAAGGAGCTGACATCAGCACAGGGCAGAGATTACCACTTCAAGGTGTTTCAGGCCTGCTCAGAGGTTATGACCCTGATACAAGACATTCCTGTGCCTGTGATTGCCATGGTGAATGGGGTTGCCACCGCAGCAGGATGCCAGCTTGTTGCCAGTTGTGACATTGCCGTGGTGACGGAGAAATCCACCTTCGCCACGCCAGGGGTCAACGTGGGTCTGTTCTGCTCAACACCAGCCGTGGCAATAGGAAGAGCTGTCCCCAAgaagGTTGCCATGGAGATGCTGTTCACAGGAAGCCCGATCTCGGCTCAAGATGCTTTGCTGCACGGGCTGGTCAGTAAGGTGGTTCCTGAGGAGCGTCTAGAGGAGGAGACGTTAGCCATCGCACGACAGATGGCCCAGGGTCGGGATGCGGCCTACGCTATAGCCTCTCGTGTCATGGTGGATAACCTGGCTCTCAGAGACGGACAGGAGGGGATACGGGCTTTCATAGAGAAACGGAAGCCTGTATGGACAAACAAAGCAGAGAAGGCCCATGATGAGTGATATCTGCTGGGCTGGCCTACCATGGCCTGTGAAGGGTCAGCAGCCTCTGGGTTGGAGAGGGAGCCTGTGGATGGTTGAGGTGTTAAACTTGCCCCCAGTTGGACCTGAACCCATCACAGAACACAGAAGTGCTCGAGGAGGACATTTTGAAATTAAATCCCTGTTGATTGTTGTCGTGATCTGATGAAGGGATACTGCAGGGCTGTCTTCATGTATGCCCTTAGGAGGGGGTGAGGTGAAGGTTTTTGGAAAGGTAGATACTTGAGATGCACCAATGGTCAAGGGACTCACAGAGGACATAGATTGGGCACTTCTTGTGACAGAATGTACATGTTTAAAGGGGCATTCTGCAGTTGAAACAATTACAAAGCTGCTACtgatttggtaaaaagctgatgggatgggactggagaaatgtaactactctaaaattcatagacagaggactgaccatccatgagataCAAATtatatgttttgaggctatacattgTTTACAAAGGTGTAAAACAAGCTTATTTGTATTTCTGATGGGGTAATAAGTCATGAACTTAAGCTCATGAGGAATGTATTAAGTTTTATTCTTCaaaaatcaatgggtatataaagtgcattcggaaagta
>XM_021577293.2
TAATAAATGTTGAACATTTACGTCTAGGATATCAAATAGGCACTGAAGCCTATGGTTAGGACCAAGAAATGTGAAATATGAATTCACACATTTTGATAGTTTGTGATTTTGCATTGATGCGCTTTTTATAAAACAGCTATTCTGAAATTGTATTGTGTTATGACATAATAAACGCAGTAGTTGCAGTCAATATACAGTTAATTATCCATTCACCCCGCAGGGAAGTATGATAATGTTTCCGTTTTGAGTTTTGTCACCCCGAAACAGTAGAAGGCGCTATACACCAATGTTGGTGTTCATCCTATGACCCAAATGTTGACGCTAGCACAGTCAAAACATGGCTCGAAATTTGTTTTATCGTGCTGCTAATATTGTCCAACTCAGCAGGTTTACACTTATAGTTGGGTCAAAGTCACTTTGTACGCAAATTCCAGCGGAGCCACTGACTGTCAGACAGCAAAACAATGGAATAAGGAGTATAACCTTGAACAACCCGAAGAAGAGGAATGCCCTGTCTCTGTCCATGCTGGAATCACTAAGAGGCAACATCCTGGCTGACATCGACGACCTCAGAGTCATCGTCATATCAGCTAAGGGTCCAGTGTTCTCCTCTGGGCATGACCTGAAGGAGCTGACATCAGCACAGGGCAGAGATTACCACTTCAAGGTGTTTCAGGCCTGCTCAGAGGTTATGACCCTGATACAAGACATTCCTGTGCCTGTGATTGCCATGGTGAATGGGGTTGCCACCGCAGCAGGATGCCAGCTTGTTGCCAGTTGTGACATTGCCGTGGTGACGGAGAAATCCACCTTCGCCACGCCAGGGGTCAACGTGGGTCTGTTCTGCTCAACACCAGCCGTGGCAATAGGAAGAGCTGTCCCCAAgaagGTTGCCATGGAGATGCTGTTCACAGGAAGCCCGATCTCGGCTCAAGATGCTTTGCTGCACGGGCTGGTCAGTAAGGTGGTTCCTGAGGAGCGTCTAGAGGAGGAGACGTTAGCCATCGCACGGTGGGTCTGTCAGGCCAGTCGGCCCGTTGTAGCCCTTGGCAAGGCCACCTTCCACAGACAGATGGCCCAGGGTCGGGATGCGGCCTACGCTATAGCCTCTCGTGTCATGGTGGATAACCTGGCTCTCAGAGACGGACAGGAGGGGATACGGGCTTTCATAGAGAAACGGAAGCCTGTATGGACAAACAAAGCAGAGAAGGCCCATGATGAGTGATATCTGCTGGGCTGGCCTACCATGGCCTGTGAAGGGTCAGCAGCCTCTGGGTTGGAGAGGGAGCCTGTGGATGGTTGAGGTGTTAAACTTGCCCCCAGTTGGACCTGAACCCATCACAGAACACAGAAGTGCTCGAGGAGGACATTTTGAAATTAAATCCCTGTTGATTGTTGTCGTGATCTGATGAAGGGATACTGCAGGGCTGTCTTCATGTATGCCCTTAGGAGGGGGTGAGGTGAAGGTTTTTGGAAAGGTAGATACTTGAGATGCACCAATGGTCAAGGGACTCACAGAGGACATAGATTGGGCACTTCTTGTGACAGAATGTACATGTTTAAAGGGGCATTCTGCAGTTGAAACAATTACAAAGCTGCTACtgatttggtaaaaagctgatgggatgggactggagaaatgtaactactctaaaattcatagacagaggactgaccatccatgagataCAAATtatatgttttgaggctatacattgTTTACAAAGGTGTAAAACAAGCTTATTTGTATTTCTGATGGGGTAATAAGTCATGAACTTAAGCTCATGAGGAATGTATTAAGTTTTATTCTTCaaaaatcaatgggtatataaagtgcattcggaaagta

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577294.2 False 1799 mRNA 0.46 6 24787480 24791567
XM_021577293.2 True 1849 mRNA 0.46 6 24787487 24791567

Neighbor

gene id symbol gene type direction distance location
LOC110500114 LOC106576221 coding upstream 42596 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 63795 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 130156 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 149925 24634677 ~ 24637555 (+)
mkln1 LOC106609349 coding upstream 184085 24575808 ~ 24603395 (+)
LOC110500123 NA coding downstream 977319 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 1080254 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 1100306 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 1140023 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 1196535 25988102 ~ 26012328 (+)
G1719811 NA non-coding upstream 31164 24755341 ~ 24756316 (+)
G1719795 NA non-coding upstream 69935 24709915 ~ 24717545 (+)
G1719695 NA non-coding upstream 193090 24530156 ~ 24594390 (+)
G1719705 NA non-coding upstream 222140 24564257 ~ 24565340 (+)
G1719862 NA non-coding downstream 40833 24832400 ~ 24833158 (+)
G1719826 NA non-coding downstream 83972 24875539 ~ 24935910 (+)
G1719893 NA non-coding downstream 91377 24882944 ~ 24883900 (+)
G1719895 NA non-coding downstream 99326 24890893 ~ 24896663 (+)
G1719913 NA non-coding downstream 127410 24918977 ~ 24924572 (+)
LOC110500097 LOC106576231 other upstream 469942 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 492683 24277797 ~ 24294858 (+)
G1719268 NA other upstream 651157 24135764 ~ 24136323 (+)
G1719225 NA other upstream 713032 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1530668 23256126 ~ 23256812 (+)
G1720836 NA other downstream 820249 25611816 ~ 25612268 (+)
G1720853 NA other downstream 844768 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1246735 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1538207 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2030080 26821647 ~ 26821935 (+)

Expression


Co-expression Network