Item | Value |
---|---|
gene id | LOC110501039 |
gene name | LOC106609337 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048585.1 |
NCBI id | CM023239.2 |
chromosome length | 64935962 |
location | 24875385 ~ 25103277 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036957433.1 | False | 6439 | mRNA | 0.43 | 13 | 24875514 | 25006538 |
XM_036957429.1 | False | 6519 | mRNA | 0.44 | 13 | 24875514 | 25006549 |
XM_036957416.1 | False | 6712 | mRNA | 0.44 | 15 | 24875514 | 25006562 |
XM_036957434.1 | False | 6277 | mRNA | 0.43 | 13 | 24875514 | 25021240 |
XM_036957424.1 | False | 6456 | mRNA | 0.44 | 14 | 24875514 | 25021242 |
XM_036957430.1 | False | 6369 | mRNA | 0.43 | 13 | 24875514 | 25021242 |
XM_036957432.1 | False | 6348 | mRNA | 0.43 | 13 | 24875514 | 25021242 |
XM_036957428.1 | False | 6406 | mRNA | 0.43 | 14 | 24875514 | 25021243 |
XM_036957431.1 | False | 6358 | mRNA | 0.43 | 13 | 24875514 | 25021243 |
XM_036957422.1 | False | 6470 | mRNA | 0.44 | 14 | 24875514 | 25021244 |
XM_036957426.1 | False | 6446 | mRNA | 0.44 | 14 | 24875514 | 25021244 |
XM_036957419.1 | False | 6504 | mRNA | 0.44 | 14 | 24875514 | 25021245 |
XM_036957421.1 | False | 6477 | mRNA | 0.44 | 14 | 24875514 | 25021245 |
XM_036957423.1 | False | 6465 | mRNA | 0.44 | 14 | 24875514 | 25021245 |
XM_036957425.1 | False | 6459 | mRNA | 0.44 | 14 | 24875514 | 25021245 |
XM_036957427.1 | False | 6420 | mRNA | 0.43 | 14 | 24875514 | 25021245 |
XM_036957411.1 | False | 6592 | mRNA | 0.44 | 15 | 24875514 | 25021246 |
XM_036957420.1 | False | 6490 | mRNA | 0.44 | 14 | 24875514 | 25021246 |
XM_036957409.1 | False | 6605 | mRNA | 0.44 | 15 | 24875514 | 25021247 |
XM_036957415.1 | False | 6581 | mRNA | 0.44 | 15 | 24875514 | 25021247 |
XM_036957436.1 | False | 6494 | mRNA | 0.44 | 14 | 24875514 | 25021247 |
XM_036957417.1 | False | 6555 | mRNA | 0.44 | 15 | 24875514 | 25021248 |
XM_036957418.1 | False | 6525 | mRNA | 0.44 | 14 | 24875514 | 25021248 |
XM_036957435.1 | False | 6513 | mRNA | 0.44 | 14 | 24875514 | 25021248 |
XM_036957407.1 | False | 6613 | mRNA | 0.44 | 15 | 24875514 | 25021249 |
XM_036957412.1 | False | 6595 | mRNA | 0.44 | 15 | 24875514 | 25021249 |
XM_036957406.1 | False | 6626 | mRNA | 0.44 | 15 | 24875514 | 25021250 |
XM_036957408.1 | False | 6614 | mRNA | 0.44 | 15 | 24875514 | 25021250 |
XM_036957413.1 | False | 6596 | mRNA | 0.44 | 14 | 24875514 | 25021250 |
XM_036957410.1 | False | 6607 | mRNA | 0.44 | 15 | 24875514 | 25021255 |
XM_036957414.1 | False | 6539 | mRNA | 0.44 | 16 | 24875514 | 25103277 |
TU1970796 | False | 1810 | lncRNA | 0.38 | 2 | 24875385 | 24935777 |
TU1970795 | False | 1676 | lncRNA | 0.38 | 2 | 24875519 | 24935777 |
TU1970799 | False | 1846 | lncRNA | 0.40 | 2 | 24880003 | 24881879 |
TU1970800 | True | 490 | lncRNA | 0.45 | 2 | 25102281 | 25103258 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110500116 | LOC106609340 | coding | downstream | 17574 | 24793606 ~ 24857940 (-) |
slc41a2b | LOC106609341 | coding | downstream | 88067 | 24754781 ~ 24787447 (-) |
LOC110500112 | LOC106609347 | coding | downstream | 228294 | 24643955 ~ 24647220 (-) |
LOC110500111 | LOC106609346 | coding | downstream | 231650 | 24640090 ~ 24643864 (-) |
LOC110500110 | podxl | coding | downstream | 252919 | 24604892 ~ 24622595 (-) |
LOC110500122 | gata3 | coding | upstream | 653514 | 25756791 ~ 25774311 (-) |
atp5f1c | LOC100305137 | coding | upstream | 763324 | 25866601 ~ 25871734 (-) |
LOC110500126 | LOC106576198 | coding | upstream | 772569 | 25875846 ~ 25887858 (-) |
LOC110500129 | LOC106609270 | coding | upstream | 806814 | 25910091 ~ 25927959 (-) |
trnaa-ugc-148 | NA | coding | upstream | 836852 | 25940129 ~ 25940207 (-) |
G1720233 | NA | non-coding | downstream | 42252 | 24832774 ~ 24833262 (-) |
G1720205 | NA | non-coding | downstream | 99430 | 24775608 ~ 24776084 (-) |
G1720186 | NA | non-coding | downstream | 129397 | 24745891 ~ 24746117 (-) |
G1720172 | NA | non-coding | downstream | 158101 | 24709381 ~ 24717413 (-) |
G1720361 | NA | non-coding | upstream | 2877 | 25106154 ~ 25106389 (-) |
G1720375 | NA | non-coding | upstream | 17629 | 25120906 ~ 25121113 (-) |
G1720435 | NA | non-coding | upstream | 95103 | 25198380 ~ 25198597 (-) |
G1720441 | NA | non-coding | upstream | 104351 | 25207628 ~ 25207941 (-) |
G1720479 | NA | non-coding | upstream | 138510 | 25241787 ~ 25242018 (-) |
G1719407 | NA | other | downstream | 730166 | 24137726 ~ 24145348 (-) |
LOC110500092 | LOC106609371 | other | downstream | 809164 | 24060587 ~ 24066411 (-) |
LOC110500089 | LOC106609371 | other | downstream | 831886 | 24037871 ~ 24043628 (-) |
G1718713 | NA | other | downstream | 1292664 | 23582575 ~ 23582850 (-) |
LOC110500069 | LOC106609440 | other | downstream | 1298764 | 23574474 ~ 23586547 (-) |
LOC110500148 | LOC106609286 | other | upstream | 1198465 | 26301474 ~ 26310640 (-) |
LOC110501044 | LOC106609327 | other | upstream | 2822140 | 27924301 ~ 27929621 (-) |
LOC110501045 | LOC106609328 | other | upstream | 2979536 | 28002248 ~ 28103013 (-) |
G1723535 | NA | other | upstream | 3127246 | 28230523 ~ 28230880 (-) |
G1723713 | utp20 | other | upstream | 3266341 | 28369618 ~ 28371062 (-) |