LOC110500127 (LOC106576199)


Basic Information

Item Value
gene id LOC110500127
gene name LOC106576199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25871821 ~ 25875841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577303.2
GGTGACGAAATACCCACGGAAGCGGCAGATGTTTTAGCAGGAAGGAGAAGAGCATAACAAGATTTGAACGTGTTCGAGGCTTATTTCGAATTTAAATAATTGTCTTGCATATGTTTATGTAGACGATTATTATTTGACATGGGGAAAGAGGGTTTTCTAAGCCCAAAGGCGATCGGGAATAGGATTAAAGCAAAAGGTCTTCAAAAATTGCGATGGTATTGTCAAATGTGCCAGAAACAATGTCGAGACGAGAATGGCTTCAAATGCCACTGCATGTCCGAGTCCCACCAGAGACAACTGCTGCTGGCCTCGGAGGACCCCAACAAGATCATGGACAACTTCTCACAGGAGTTCAAGAATGACTTTATTGAGCTGATTAAAAGACGCTTTGgaaccAAGCGAGTGCAAAACAACATTGTCTATAACGAGTACATCAATGACAGAGAGCATGTCCATATGAACTCCACCCAGTGGGAGACTCTCACTGAATTCACCAAGTGGCTGGGGAAAGAGGGTTTCTGTAAGGTGGACGAGACGCCCAAAGGCTGGTACATCCAGTACATCGACCGTGACCCAGAGACCATCCGGAGGCAGGAGGAgctggagaggaagaagaagCAGGACCTCGATGACCAGGAGCGCAGTGCCAAGTTCATAGAGGAGCAGGTCCGCCGAGGCCAAGGAGGCAGGGAGCCAGAGGAAGCACCGGTTTTCACTGAGTTGAAACGAGAAAGTGAAGAAGAGAAAATTACCTTCAATCTGGCCAAGGGCTCCTGTTCCTCTGCGGATGGCCTATCTAAAGCCAGTGTGGCCCTGGGTCCCAGTGCCCTGAAGGCAGCAGGATCAGGGAAAAGGAAAGATGCTCCCTCCACCTCAGAAGccaaagaggagaagaagaagtcaGCCCTGGATGAGATCATGGAGATGGAGGAGCAGAAGAAGAGGTCTGTGAGAGTGGACCACTGGCTGCACCCCGGCATCGTAATCAAAGTTGTTACCAAGAGACTGGGGGAGAAATACCACAAGAAGAAAGGAGTCATCAAGGAGGTGCAGGATAAATACACAGCCGTTGTGAAGATGATTGACTCGGGGGACAAACTGAAACTAGACCAGAGTCACCTGGAGACGGTCATCCCTGCACCAGGTAAAAGGGTCCTGGTTCTGAACGGTgtgtacagagacacagaggcccTACTGGACTCCATAGACGAGAGAAAGTTCAGTGCCACCCTCACACTTGACTCGGGTCGGATGAAAGGGAGGAGGGTGGATGGGATCGCCTACGAGGATTTCTCTAAAATAGCCGGATCTATCATGACTTCTGTTACATGACAGCGTAACCCAAGAGCCCCCTACCCTGCCACTGAGGCCTATCACCCGAGAGACTCTACTGTGTCAGAGTTACTTTCTCTAAATATCCCAGAATGCATTTTCTATGGAGGTATCACTTCCTGACTTAGCCAAGCAAtgattatggggggggggggggacattttcTTTTTAGTTTTCTTTTGTATTGTTATTAAAATGTTTctctacaaatacattttaatgttGCAATATTACTTATTGAATAAAGTACAACACAATTGACCTA

Function

NR:

description
DNA/RNA-binding protein KIN17-like isoform X2

GO: NA

KEGG:

id description
K13102 KIN; DNA/RNA-binding protein KIN17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577303.2 True 1597 mRNA 0.48 12 25871821 25875841

Neighbor

gene id symbol gene type direction distance location
LOC110500123 NA coding upstream 98940 25768886 ~ 25772881 (+)
LOC110500118 LOC106609342 coding upstream 1080254 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 1126937 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 1148136 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 1214497 24653227 ~ 24657324 (+)
LOC110500124 itih5 coding downstream 16032 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 55749 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 112261 25988102 ~ 26012328 (+)
il15ra LOC100136332 coding downstream 187975 26063816 ~ 26121228 (+)
cdc123 LOC106576189 coding downstream 262250 26138091 ~ 26147264 (+)
G1721011 atp5c1 non-coding upstream 3777 25866596 ~ 25868044 (+)
G1721016 NA non-coding upstream 12393 25859228 ~ 25859428 (+)
G1721005 NA non-coding upstream 23358 25848133 ~ 25848463 (+)
G1721004 NA non-coding upstream 24991 25846603 ~ 25846830 (+)
G1721002 NA non-coding upstream 35355 25836256 ~ 25836466 (+)
G1721010 LOC106576198 non-coding downstream 1075 25876916 ~ 25884807 (+)
G1721050 NA non-coding downstream 98721 25974562 ~ 25975664 (+)
G1721087 pfkfb3 non-coding downstream 166067 26041908 ~ 26043103 (+)
G1721125 NA non-coding downstream 230100 26105941 ~ 26106170 (+)
G1720853 NA other upstream 235232 25636335 ~ 25636589 (+)
G1720836 NA other upstream 259553 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1554283 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1577024 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1735498 24135764 ~ 24136323 (+)
G1721084 pfkfb3 other downstream 162461 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 453933 26324744 ~ 26333964 (+)
G1722079 NA other downstream 945806 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2446679 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2465660 28341423 ~ 28343734 (+)

Expression


Co-expression Network