il15ra (LOC100136332)


Basic Information

Item Value
gene id il15ra
gene name LOC100136332
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26063816 ~ 26121228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577320.2
TTGAGAATGAAAGTGAAAGTGCCAAAGTGGGAGCTACACATGTAATGTGGATGAAAGGTTTGCGGCGTTAACACAGACCATATCAAACGTTCGGAGTGGCATATTATTTTCCTGTGACTTAGTTCATCATCAAAGAGACTTGAAAGTGAGTCCTTTATTTAAACATTGGAATAGCAGGCTCCAGGGTCATGCGGCTGCGTCTCCTTTCCCTCCTTCTTATCGTCAAAGTGTGTCGACTCAATACTGTCAGTCCAGACGTGTGCCCACCCCTGTCTCATTGGAAGCTCACCAAGCCTTTGAACACGAGGGAAATTTATCAAGAAAACGAATCTCTGCGCTACCAGTGTGTGGATGGCTATGTGAGGAAGGCGGGAACCTCCAATCTCATCAAGTGCAAACGGATTGGTCAGGTTCTTCAGTGGACACTCCCAACACTGATATGCATACCTTCAACAACCCACAAGACAACTCAATTTCCTACAACGCACCTCTCAGTGCCCACAGAGAGAGTTAGCCCAAGACCAACCACTCTCAGTTCACTTTTATCTCAAACACTGCATTCTGTCACAGAGACCCAAGAGGTCATTACTACGGTTACAGTGACAACCACCATCATCAGTGACATCACATCAGTGCCAGTGAATAAGTCCAGTGCGGTGACCTCTGTCTCCACGAAGACTGTTTCTCCATCAGAGAGTTACTGTGTCcccaacagagccccaacctccaGTGACTATCCAGTTGGCGatGGAAGCACTGGGAAGAGTTCTGCTACAGCCATATATGCAGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATTATGCAAATGAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGGCGGACAACCAGCAGCCACTTAGAAAAGACAAAGGTACATCAGTCTGATGGTGGGGGAACAATGACCTTGGATTGGACAAGAACTGGACCAAAAATTACAGTGGCTTGGACCTGAGTGTCCTCGCGTGGAAAATTAAAATAACAAAAGCACCACCCAAATGTATTAATTTAAGACATATTGATTTatttaattgattaattaatatCCTTAAACTGGCAAAGATTCTAACTAATCACAACAGCCCAAAATCCATGGGATTACTTTCTCACTGAATTCACAAAAGGTATGTGATAAACATGCAACTTTGGAGAACAGTGAAAGTTaggcccgactaaccggtgcctgtatatagccttgctactgtatatagcctcgctactgtatatagcctcgctactgttattattcactgtatttttactgttgttttttatttccttacttactcccagttagatagcaaatgttcctttttttcaaaaatattatttttgtaggcgaaatagctccgtttgttcttcacgtttggctgagaaatcgcccgtaaattgcagtcacgaaaactgcATTTTTCAAATTACCTCCAtaagacagaaacatggcaaacgttgtttataatcaatcctcaaggtgtttttaaaatATCTATTAGacaatatatccatcgggacaattcgtttttcagtaggaccgattggagtaatggctacctctgtattttacgcgagaatctctctggcagcatcaggtgaccacttgcgcaatgtagccgcttacgggtattcttcaacataaatgcgtaaaactacgtcacaatgctgtagacaccttcaggaatacggagaaagagtaatctggttgatagcccattcactgatcaatagggactcattggaacgcagcgctttcaaaacatggggcacttccagattggatttttctcaggctttcgcctgcaacattagttctgttatactcacagacaatatttttacagttttggaaacgttagagtgttttctatcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaaaaTAAATACCCCGGCAAAGCACAGTAGAAAAAATGGTCACCAAAGATCCAACTGATTTGGAGTCCTatagaaaattatgaaacactgGTAAAACTAAAGCTAGAAAAGCCTCCTATATGGATAGTcttacaaaaaataaaaacaaaaatccaCAGCAGTTCTGAAAATACACAAATTACCTTTGAAATAATCTGGCTTTAGACCCAACCATTCTACCACCTACAGCATTATTGAAATTTACTAATGATTTATATTCTAAATCTGACCAAGGCCAACTAACTGGTGCCATCATTGATTTAATTGGGAATTCTATTTTACTAGCGAAACGTTAACATTGGTTTCACTAACAGATCACTAAACTGGTTTCATGCATATTTTAGCATTAGAAAACAATGTGTTTTCATAGACGGACACAAATCACAACTTCTTGGACTCAGTAGAGGAGTACATCAATCTCTATAGTCATAAATGAATTGCCTCTAATTTGTCAGGATACACAAGATCACTTATACGCTGATGATGCAGTGCAGTATACATCCACTTCAAATAATTTACAGATACAAGCAACTCCAAAGTCCTATAtcatactgtgttattgacttgtttattgtttactccatgtgtaattctgtgttgttgtctgttcaccctgctatgctttatcttcgccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctagttaaataaagttgaaatgaaataaaaaatgctGTTTGGTATGACACCGAATGAACTCCATAGCTGGAAATTTCAAAATTCATTGAAGTGATGGAACAATGCTTGAAAGTGTTGTTTGTTTGAAATATCTGGGTTTGAGGATAGATTCTAAATGATCTTTTGGAAAGCATATTGATTATATTAGAAAACAATtgactacagtgcattcggaaagtattcagaccccttcattttttccacattttgttatagccttattctaaaattgtttaaaATAATTGTTTTCCCTTATCAAAtgaggcaaaaacaggtttttagacatttttgcaaatgtattaccaataaagaactgaaatatcacatttacatac
>XM_021577319.2
TGAGAATGAAAGTGAAAGTGCCAAAGTGGGAGCTACACATGTAATGTGGATGAAAGGTTTGCGGCGTTAACACAGACCATATCAAACGTTCGGAGTGGCATATTATTTTCCTGTGACTTAGTTCATCATCAAAGAGACTTGAAAGTGAGTCCTTTATTTAAACATTGGAATAGCAGGCTCCAGGGTCATGCGGCTGCGTCTCCTTTCCCTCCTTCTTATCGTCAAAGTGTGTCGACTCAATACTGTCAGTCCAGACGTGTGCCCACCCCTGTCTCATTGGAAGCTCACCAAGCCTTTGAACACGAGGGAAATTTATCAAGAAAACGAATCTCTGCGCTACCAGTGTGTGGATGGCTATGTGAGGAAGGCGGGAACCTCCAATCTCATCAAGTGCAAACGGATTGGTCAGGTTCTTCAGTGGACACTCCCAACACTGATATGCATACCTGACCCATCCATTCCAACTACGATAGAACCTTCAACAACCCACAAGACAACTCAATTTCCTACAACGCACCTCTCAGTGCCCACAGAGAGAGTTAGCCCAAGACCAACCACTCTCAGTTCACTTTTATCTCAAACACTGCATTCTGTCACAGAGACCCAAGAGGTCATTACTACGGTTACAGTGACAACCACCATCATCAGTGACATCACATCAGTGCCAGTGAATAAGTCCAGTGCGGTGACCTCTGTCTCCACGAAGACTGTTTCTCCATCAGAGAGTTACTGTGTCcccaacagagccccaacctccaGTGACTATCCAGTTGGCGatGGAAGCACTGGGAAGAGTTCTGCTACAGCCATATATGCAGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATTATGCAAATGAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGGCGGACAACCAGCAGCCACTTAGAAAAGACAAAGGTACATCAGTCTGATGGTGGGGGAACAATGACCTTGGATTGGACAAGAACTGGACCAAAAATTACAGTGGCTTGGACCTGAGTGTCCTCGCGTGGAAAATTAAAATAACAAAAGCACCACCCAAATGTATTAATTTAAGACATATTGATTTatttaattgattaattaatatCCTTAAACTGGCAAAGATTCTAACTAATCACAACAGCCCAAAATCCATGGGATTACTTTCTCACTGAATTCACAAAAGGTATGTGATAAACATGCAACTTTGGAGAACAGTGAAAGTTaggcccgactaaccggtgcctgtatatagccttgctactgtatatagcctcgctactgtatatagcctcgctactgttattattcactgtatttttactgttgttttttatttccttacttactcccagttagatagcaaatgttcctttttttcaaaaatattatttttgtaggcgaaatagctccgtttgttcttcacgtttggctgagaaatcgcccgtaaattgcagtcacgaaaactgcATTTTTCAAATTACCTCCAtaagacagaaacatggcaaacgttgtttataatcaatcctcaaggtgtttttaaaatATCTATTAGacaatatatccatcgggacaattcgtttttcagtaggaccgattggagtaatggctacctctgtattttacgcgagaatctctctggcagcatcaggtgaccacttgcgcaatgtagccgcttacgggtattcttcaacataaatgcgtaaaactacgtcacaatgctgtagacaccttcaggaatacggagaaagagtaatctggttgatagcccattcactgatcaatagggactcattggaacgcagcgctttcaaaacatggggcacttccagattggatttttctcaggctttcgcctgcaacattagttctgttatactcacagacaatatttttacagttttggaaacgttagagtgttttctatcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaaaaTAAATACCCCGGCAAAGCACAGTAGAAAAAATGGTCACCAAAGATCCAACTGATTTGGAGTCCTatagaaaattatgaaacactgGTAAAACTAAAGCTAGAAAAGCCTCCTATATGGATAGTcttacaaaaaataaaaacaaaaatccaCAGCAGTTCTGAAAATACACAAATTACCTTTGAAATAATCTGGCTTTAGACCCAACCATTCTACCACCTACAGCATTATTGAAATTTACTAATGATTTATATTCTAAATCTGACCAAGGCCAACTAACTGGTGCCATCATTGATTTAATTGGGAATTCTATTTTACTAGCGAAACGTTAACATTGGTTTCACTAACAGATCACTAAACTGGTTTCATGCATATTTTAGCATTAGAAAACAATGTGTTTTCATAGACGGACACAAATCACAACTTCTTGGACTCAGTAGAGGAGTACATCAATCTCTATAGTCATAAATGAATTGCCTCTAATTTGTCAGGATACACAAGATCACTTATACGCTGATGATGCAGTGCAGTATACATCCACTTCAAATAATTTACAGATACAAGCAACTCCAAAGTCCTATAtcatactgtgttattgacttgtttattgtttactccatgtgtaattctgtgttgttgtctgttcaccctgctatgctttatcttcgccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctagttaaataaagttgaaatgaaataaaaaatgctGTTTGGTATGACACCGAATGAACTCCATAGCTGGAAATTTCAAAATTCATTGAAGTGATGGAACAATGCTTGAAAGTGTTGTTTGTTTGAAATATCTGGGTTTGAGGATAGATTCTAAATGATCTTTTGGAAAGCATATTGATTATATTAGAAAACAATtgactacagtgcattcggaaagtattcagaccccttcattttttccacattttgttatagccttattctaaaattgtttaaaATAATTGTTTTCCCTTATCAAAtgaggcaaaaacaggtttttagacatttttgcaaatgtattaccaataaagaactgaaatatcacatttacatac
>NM_001129987.1
CCAAAGTGGGAGCTACACATGTAATGTGGATGAAAGGTTTGCGGCGTTAACACAGACCATATCAAACGTTCGGAGTGGCATATTATTTTCCTGTGACTTAGTTCATCATCAAAGAGACTTGAAAGTGAGTCCTTTATTTAAACATTGGAATAGCAGGCTCCAGGGTCATGCGGCTGCGTCTCCTTTCCCTCCTTCTTATCGTCAAAGTGTGTCGACTCAATACTGTCAGTCCAGatGGAAGCACTGGGAAGAGTTCTGCTACAGCCATATATGCAGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATTATGCAAATGAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGGCGGACAACCAGCAGCCACTTAGAAAAGACAAAGGTACATCAGTCTGATGGTGGGGGAACAATGACCTTGGATTGGACAAGAACTGGACCAAAAATTACAGTGGCTTGGACCTGAGTGTCCTCGCGTGGAAAATTAAAATAACAAAAGCACCACCCAAATGTATTAATTTAAGACATATTGATTTatttaattgattaattaatatCCTTAAACTGGCAAAGATTCTAACTAATCACAACAGCCCAAAATCCATGGGATTACTTTCTCACTGAATTCACAAAAGGTATGTGATAAACATGCAACTTTGGAGAACAGTGAAAGTTaggcccgactaaccggtgcctgtatatagccttgctactgtatatagcctcgctactgtatatagcctcgctactgttattattcactgtatttttactgttgttttttatttccttacttacatttatttatatattttatttttcttctttttatttaacacttttttttttgcaaatgcgcttgttaaatcattgttgatttagagcctgtaaataagcatttcactgtaaggtctacacctgtggtattcggcacacgtgacaaataaactttgatttga
>TU1971766
GTGGGAGCTACACATGTAATGTGGATGAAAGGTTTGCGGCGTTAACACAGACCATATCAAACGTTCGGAGTGGCATATTATTTTCCTGTGACTTAGTTCATCATCAAAGAGACTTGAAAACGTGTGCCCACCCCTGTCTCATTGGAAGCTCACCAAGCCTTTGAACACGAGGGAAATTTATCAAGAAAACGAATCTCTGCGCTACCAGTGTGTGGATGGCTATGTGAGGAAGGCGGGAACCTCCAATCTCATCAAGTGCAAACGGATTGGTCAGGTTCTTCAGTGGACACTCCCAACACTGATATGCATACatGGAAGCACTGGGAAGAGTTCTGCTACAGCCATATATGCAGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATTATGCAAATGAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGGCGGACAACCAGCAGCCACTTAGAAAAGACAAAGATTATGGTGACATCTATCAAAGCACAACCAAGACCTTACTTTGTGAATTAAATGTCATTTATAACTAT
>TU1971764
ggggcacttccagattggatttttctcaggctttcgcctgcaacattagttctgttatactcacagacaatatttttacagttttggaaacgttagagtgttttctatcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaaaaTAAATACCCCGGCAAAGCACAGTAGAAAAAATGGTCACCAAAGATCCAACTGATTTGGAGTCCTatagaaaattatgaaATAGTcttacaaaaaataaaaacaaaaatcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577320.2 False 3106 mRNA 0.39 7 26063816 26089873
XM_021577319.2 False 3135 mRNA 0.39 8 26063817 26089873
NM_001129987.1 False 1042 mRNA 0.40 9 26063837 26121228
TU1971766 False 613 lncRNA 0.45 6 26063842 26095905
TU1971764 True 269 lncRNA 0.35 2 26088632 26088939

Neighbor

gene id symbol gene type direction distance location
LOC110500131 prkcq coding upstream 51488 25988102 ~ 26012328 (+)
sfmbt2 LOC106576194 coding upstream 86537 25931590 ~ 25977279 (+)
LOC110500124 itih5 coding upstream 156330 25891873 ~ 25907486 (+)
LOC110500127 LOC106576199 coding upstream 187975 25871821 ~ 25875841 (+)
LOC110500123 NA coding upstream 290935 25768886 ~ 25772881 (+)
cdc123 LOC106576189 coding downstream 16863 26138091 ~ 26147264 (+)
camk1da LOC106576188 coding downstream 27527 26148755 ~ 26217898 (+)
LOC110500144 optn coding downstream 107748 26228976 ~ 26237213 (+)
mcm10 mcm10 coding downstream 116781 26238009 ~ 26247743 (+)
LOC110500147 LOC106609285 coding downstream 144914 26266142 ~ 26301475 (+)
G1721087 pfkfb3 non-coding upstream 20713 26041908 ~ 26043103 (+)
G1721050 NA non-coding upstream 88152 25974562 ~ 25975664 (+)
G1721010 LOC106576198 non-coding upstream 179009 25876916 ~ 25884807 (+)
G1721011 atp5c1 non-coding upstream 195772 25866596 ~ 25868044 (+)
G1721016 NA non-coding upstream 204388 25859228 ~ 25859428 (+)
G1721131 fbxo18 non-coding downstream 9551 26130779 ~ 26132124 (+)
G1721188 NA non-coding downstream 126988 26248216 ~ 26248462 (+)
G1721189 NA non-coding downstream 127276 26248504 ~ 26249045 (+)
G1721191 NA non-coding downstream 129959 26251187 ~ 26251509 (+)
G1721192 NA non-coding downstream 132846 26254074 ~ 26254706 (+)
G1721084 pfkfb3 other upstream 21973 26038302 ~ 26041843 (+)
G1720853 NA other upstream 427227 25636335 ~ 25636589 (+)
G1720836 NA other upstream 451548 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1746278 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1769019 24277797 ~ 24294858 (+)
cep83 LOC106609290 other downstream 208546 26324744 ~ 26333964 (+)
G1722079 NA other downstream 700419 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2201292 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2220273 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 3091591 29209169 ~ 29214283 (+)
G1721125 NA non-coding downstream 10036 26105941 ~ 26106170 (+)
G1721126 NA non-coding downstream 10874 26106779 ~ 26107037 (+)
G1721128 NA non-coding downstream 11954 26107859 ~ 26126990 (+)

Expression


Co-expression Network