LOC110500147 (LOC106609285)


Basic Information

Item Value
gene id LOC110500147
gene name LOC106609285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26266142 ~ 26301475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577334.2
TTCAGTttatttcccccctctctccgtgTCAGCAGCAGCATAGGCGGAGGCGTCAGAATGTGGGCAGCCACAGTTTGCACCTCTACCGGTTCATCCACGGACACAATCCGTTCTCGCTCCCCATAAACTCCCTGCTCGTCATAGAAGTGAGCTTTCGGGAATCTGGTCTGTAATTTTGTATCATTTGAATTTTGAATACGGTGTTCAAGTGAGAACATTCTGTACGGAATAATGTGAGCAAGAGAAAAGCAAGACGTAGACGAACTGTTTTTTTACGGGTGGGTGGAAAGACGGGCATCCGGCCTCCGAGGAAGCGCCCATCGAGGTGTGGAAGTCAGGTAGAAACAACGTACATCGTTTTTGTCCAGCCAACCCTGAGGAGTGTGTGATGGAGAAGATGAAGAGGTTTAAGCGGCGCCTGTCCCTGACGCTGCGCTCCAGCCACACCATAGACGAGTCTCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCAACAAGGACAATGAGCCAATCGTGCGTAATGGGCGACCGCCCTCCTCCCACAGTATGCACTCGTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCCCCCCTCCGCAGGCCACACAGTGTCATCGGAGGAAGCCTGGGTTCGTTCATGACCTTCCCCAGCAATGGCAGCCGCCTTGACATCGTCCATGAGAACCTGAAGATGGGCTCAGACGGGGAGAGTGACCAGGCGTCTGGGACGTCGTCCGACGAGGTGCAGTCGCCCACCGGGGTGTGTCTGAGGAACAGGGTGCAACGACGCATCTCCATGGAGgacctGAACAAGCGTCTGTCTCTGCCTGCTGACATCCGTATCCCTGACGGTTACCTGGAGAAGCTGCAGCTGAGCAGCCCTACCTTCGACCAGCCCCTCAGCCGACTCTCACGCAGGGCCTCCctgtCGGAGATTGGTTTTGGGAAGCTGGAGACCTACATCAAACTGGACAAACTGGGAGAGGGGACCTATGCTACAGTATTTAAGGGGCGCAGTAAGCTGACTGACAACCTGGTGGCGCTAAAGGAGATCAGGCTGGAGCACGAAGAGGGAGCACCCTGCACCGCCATCAGAGAAGTGTCGTTACTGAAGGACCTGAAACATGCCAACATCGTGACCTTACATGACATCGTCCACACAGACAAGAGCCTGACGCTGGTCTTCGAGTACCTGGATAAAGACTTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGTATGCACAACGTCAAGATCTTCTTGTTCCAGATTTTGCGGGGGTTGGCTTACTGCCACAAGCGGAAGGTTCTCCACAGAGACCTAAAGCCCCAGAACCTGCTCATCAACGAGAGAGGGGAACTCAAACTGGCTGACTTTGGTCTGGCGCGGGCTAAGTCTGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACTCTGTGGTACCGGCCTCCTGACGTCCTGCTAGGCTCCTCTGAGTACTCCACACAGATTGACATGTGGGGTGTGGGGTGTATATTTTATGAGATGGCTGCAGGTCGGCCCCTGTTTCCTGGCTCCACCGTAGAGGACGAGCTCCACCTCATATTCAGACTGCTGGgcaCGCCATCAGAGGACAGCTGGCCAGGGATCTCTGGCGTCGACGAGTTCAAATCCTACAACTTCCCCAAATACAAACCTCAGCCCTTCATCAACCATGCACCCAGGTTGGACACAGAAGGCATTGAACTGGTGTTATCGTTTCTGAAAtacGAGTCCAAGAGGAGGATCTCAGCAGATGAAGCTATGAAGCAGGCCTACTTCAAGAGCCTAGGGGCACGGGTCCACACACTGCATGAGAgTGTATCAATATTCACTCTGAAGGATATCCAACTGCAGAGAGACCCTGGCTATCGGAACTCCTCAAACCTAGAGTCAGGCAACAGCAAGAACAGAAGACAGAGCATGCTCTTCTAGACTTTCTGCTCCTGGGTGGAGCTCTTTCCTGTTGCTATAGTAACGGACTCTCGCTTGAGATGAGACTGAATGGGACAgagccccctcctccctctcgcatgagcccctcacccctcacccccccAATAGAGCGAGTGAGTCTGGAGTTGattggggagggagagatgatcTACGTTTATTTATTTGAAGATAtggaaaggggggtgggggggtatattttgctgctatactactactgtctgtatttAACACGCAGTTTGTGTATATGATGATGTGAACTCCGACACCATGCACAACCGACCAGTCGCTAAGGTTACTATTGTTATTGTAAATGATGAATTATGGTTATGATTCCACTGATGATCTCGATGTTGTTTATCATAGCTGTTACCTTTGCTGTTTTGCATGTCGTTGTGTTCAGAGACTGAATGCCTTTTTAGCATTTTTTTCCTCAAGTACTTTCTCAAGCTTCCTCTGATGGTGGTGTTTGACTGAAATGAGACCAGACCGGTCCAAactgggagagagggactggactgGGAGTGTCTGGTCCTCAACTGGAAATCTTTCCTCTGAACCGAAGCAATTCCCagcctccctctcattctccttgACCTAGAACATTCCAGAACATTTCAGGGGCCAGACGGGGCTTTAGGAAGGGGTTGAGGTGGGGCCCAGTCATTGGGAGAGCACAACAACCCTCAGAGCCAACGAATGGGACCACAGCAGAAGGTAGAGTTTGACTCCCCAGGACATTTCCGGTCTCCCTCTCCGGTTGTCATGGCAACAGGGAAGCAATGATTagggaggagagaaacacagGAGCGCCGTGACCTCCCACAGGAACTCATCagtccccctccttctcccctagATGGTCTTGACCCCAGTTCTTGTATGCAAGATCTTCATTTTCTCTTGCCTTTTGAAGGTCTACAATACTGGTTGTTTTTGTGCATCAATAACCTGTAAGCAGtttctagttttttttttaatggctcTCTACTCTGTAGCTGGCCATGGGAGTGGGGTTGTACCATGATGACTGGTGTTTAAAATGGCTGACTTGATTTGACAGTATTAAGAgatttttgttttctatgtttgaCCTCTCCTTGTGAATACAGTGTCAGTGTGGCATGTCAAGGGGCAGAAGCTCCGCCTCTCAAAGGAGAAAACATTTTGTTTCATAGTCTACATTGgacctcgagtttcttttttcaGCGTTTGTACACATTTCAAATAGACTTAACAAGCCGCGGTGTGTGTCTTCAGCCGACAGTGATGTATATTAATATTGTAATACTGTACTTTTTCAAGTTTAAAACTGATCTGAGCTTACCTGagggtgtgtgtgcgcgccagACATATGGAGCTCCTGCTGTGGTGTAAACTCAACCTCTCTGGAACACTGACAGTTGTCCTGTAATTATTTATTTCTCATAACcatcacagtaaaatgagtctgTTTGATAAGTA
>XM_036957469.1
TTCAGTttatttcccccctctctccgtgTCAGCAGCAGCATAGGCGGAGGCGTCAGAATGTGGGCAGCCACAGTTTGCACCTCTACCGGTTCATCCACGGACACAATCCGTTCTCGCTCCCCATAAACTCCCTGCTCGTCATAGAAGTGAGCTTTCGGGAATCTGGTCTGTAATTTTGTATCATTTGAATTTTGAATACGGTGTTCAAGTGAGAACATTCTGTACGGAATAATGTGAGCAAGAGAAAAGCAAGACGTAGACGAACTGTTTTTTTACGGGTGGGTGGAAAGACGGGCATCCGGCCTCCGAGGAAGCGCCCATCGAGGTGTGGAAGTCAGGTAGAAACAACGTACATCGTTTTTGGATCCgatcgctcctctctctctgtctcattgtcTTGGCTTCCACTCTCAAACTGAAGGACATTTTCCAGCATTTGGGACATAGTCCAGCCAACCCTGAGGAGTGTGTGATGGAGAAGATGAAGAGGTTTAAGCGGCGCCTGTCCCTGACGCTGCGCTCCAGCCACACCATAGACGAGTCTCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCAACAAGGACAATGAGCCAATCGTGCGTAATGGGCGACCGCCCTCCTCCCACAGTATGCACTCGTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCCCCCCTCCGCAGGCCACACAGTGTCATCGGAGGAAGCCTGGGTTCGTTCATGACCTTCCCCAGCAATGGCAGCCGCCTTGACATCGTCCATGAGAACCTGAAGATGGGCTCAGACGGGGAGAGTGACCAGGCGTCTGGGACGTCGTCCGACGAGGTGCAGTCGCCCACCGGGGTGTGTCTGAGGAACAGGGTGCAACGACGCATCTCCATGGAGgacctGAACAAGCGTCTGTCTCTGCCTGCTGACATCCGTATCCCTGACGGTTACCTGGAGAAGCTGCAGCTGAGCAGCCCTACCTTCGACCAGCCCCTCAGCCGACTCTCACGCAGGGCCTCCctgtCGGAGATTGGTTTTGGGAAGCTGGAGACCTACATCAAACTGGACAAACTGGGAGAGGGGACCTATGCTACAGTATTTAAGGGGCGCAGTAAGCTGACTGACAACCTGGTGGCGCTAAAGGAGATCAGGCTGGAGCACGAAGAGGGAGCACCCTGCACCGCCATCAGAGAAGTGTCGTTACTGAAGGACCTGAAACATGCCAACATCGTGACCTTACATGACATCGTCCACACAGACAAGAGCCTGACGCTGGTCTTCGAGTACCTGGATAAAGACTTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGTATGCACAACGTCAAGATCTTCTTGTTCCAGATTTTGCGGGGGTTGGCTTACTGCCACAAGCGGAAGGTTCTCCACAGAGACCTAAAGCCCCAGAACCTGCTCATCAACGAGAGAGGGGAACTCAAACTGGCTGACTTTGGTCTGGCGCGGGCTAAGTCTGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACTCTGTGGTACCGGCCTCCTGACGTCCTGCTAGGCTCCTCTGAGTACTCCACACAGATTGACATGTGGGGTGTGGGGTGTATATTTTATGAGATGGCTGCAGGTCGGCCCCTGTTTCCTGGCTCCACCGTAGAGGACGAGCTCCACCTCATATTCAGACTGCTGGgcaCGCCATCAGAGGACAGCTGGCCAGGGATCTCTGGCGTCGACGAGTTCAAATCCTACAACTTCCCCAAATACAAACCTCAGCCCTTCATCAACCATGCACCCAGGTTGGACACAGAAGGCATTGAACTGGTGTTATCGTTTCTGAAAtacGAGTCCAAGAGGAGGATCTCAGCAGATGAAGCTATGAAGCAGGCCTACTTCAAGAGCCTAGGGGCACGGGTCCACACACTGCATGAGAgTGTATCAATATTCACTCTGAAGGATATCCAACTGCAGAGAGACCCTGGCTATCGGAACTCCTCAAACCTAGAGTCAGGCAACAGCAAGAACAGAAGACAGAGCATGCTCTTCTAGACTTTCTGCTCCTGGGTGGAGCTCTTTCCTGTTGCTATAGTAACGGACTCTCGCTTGAGATGAGACTGAATGGGACAgagccccctcctccctctcgcatgagcccctcacccctcacccccccAATAGAGCGAGTGAGTCTGGAGTTGattggggagggagagatgatcTACGTTTATTTATTTGAAGATAtggaaaggggggtgggggggtatattttgctgctatactactactgtctgtatttAACACGCAGTTTGTGTATATGATGATGTGAACTCCGACACCATGCACAACCGACCAGTCGCTAAGGTTACTATTGTTATTGTAAATGATGAATTATGGTTATGATTCCACTGATGATCTCGATGTTGTTTATCATAGCTGTTACCTTTGCTGTTTTGCATGTCGTTGTGTTCAGAGACTGAATGCCTTTTTAGCATTTTTTTCCTCAAGTACTTTCTCAAGCTTCCTCTGATGGTGGTGTTTGACTGAAATGAGACCAGACCGGTCCAAactgggagagagggactggactgGGAGTGTCTGGTCCTCAACTGGAAATCTTTCCTCTGAACCGAAGCAATTCCCagcctccctctcattctccttgACCTAGAACATTCCAGAACATTTCAGGGGCCAGACGGGGCTTTAGGAAGGGGTTGAGGTGGGGCCCAGTCATTGGGAGAGCACAACAACCCTCAGAGCCAACGAATGGGACCACAGCAGAAGGTAGAGTTTGACTCCCCAGGACATTTCCGGTCTCCCTCTCCGGTTGTCATGGCAACAGGGAAGCAATGATTagggaggagagaaacacagGAGCGCCGTGACCTCCCACAGGAACTCATCagtccccctccttctcccctagATGGTCTTGACCCCAGTTCTTGTATGCAAGATCTTCATTTTCTCTTGCCTTTTGAAGGTCTACAATACTGGTTGTTTTTGTGCATCAATAACCTGTAAGCAGtttctagttttttttttaatggctcTCTACTCTGTAGCTGGCCATGGGAGTGGGGTTGTACCATGATGACTGGTGTTTAAAATGGCTGACTTGATTTGACAGTATTAAGAgatttttgttttctatgtttgaCCTCTCCTTGTGAATACAGTGTCAGTGTGGCATGTCAAGGGGCAGAAGCTCCGCCTCTCAAAGGAGAAAACATTTTGTTTCATAGTCTACATTGgacctcgagtttcttttttcaGCGTTTGTACACATTTCAAATAGACTTAACAAGCCGCGGTGTGTGTCTTCAGCCGACAGTGATGTATATTAATATTGTAATACTGTACTTTTTCAAGTTTAAAACTGATCTGAGCTTACCTGagggtgtgtgtgcgcgccagACATATGGAGCTCCTGCTGTGGTGTAAACTCAACCTCTCTGGAACACTGACAGTTGTCCTGTAATTATTTATTTCTCATAACcatcacagtaaaatgagtctgTTTGATAAGTA
>XM_036957468.1
aagagtgggaggaggaggagtggatgcTGACAAAGCCCCCCCGTTTATCTATCATCTGATGCCATGTGTCTTCGGGACAAGTCCAGCCAACCCTGAGGAGTGTGTGATGGAGAAGATGAAGAGGTTTAAGCGGCGCCTGTCCCTGACGCTGCGCTCCAGCCACACCATAGACGAGTCTCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCAACAAGGACAATGAGCCAATCGTGCGTAATGGGCGACCGCCCTCCTCCCACAGTATGCACTCGTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCCCCCCTCCGCAGGCCACACAGTGTCATCGGAGGAAGCCTGGGTTCGTTCATGACCTTCCCCAGCAATGGCAGCCGCCTTGACATCGTCCATGAGAACCTGAAGATGGGCTCAGACGGGGAGAGTGACCAGGCGTCTGGGACGTCGTCCGACGAGGTGCAGTCGCCCACCGGGGTGTGTCTGAGGAACAGGGTGCAACGACGCATCTCCATGGAGgacctGAACAAGCGTCTGTCTCTGCCTGCTGACATCCGTATCCCTGACGGTTACCTGGAGAAGCTGCAGCTGAGCAGCCCTACCTTCGACCAGCCCCTCAGCCGACTCTCACGCAGGGCCTCCctgtCGGAGATTGGTTTTGGGAAGCTGGAGACCTACATCAAACTGGACAAACTGGGAGAGGGGACCTATGCTACAGTATTTAAGGGGCGCAGTAAGCTGACTGACAACCTGGTGGCGCTAAAGGAGATCAGGCTGGAGCACGAAGAGGGAGCACCCTGCACCGCCATCAGAGAAGTGTCGTTACTGAAGGACCTGAAACATGCCAACATCGTGACCTTACATGACATCGTCCACACAGACAAGAGCCTGACGCTGGTCTTCGAGTACCTGGATAAAGACTTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGTATGCACAACGTCAAGATCTTCTTGTTCCAGATTTTGCGGGGGTTGGCTTACTGCCACAAGCGGAAGGTTCTCCACAGAGACCTAAAGCCCCAGAACCTGCTCATCAACGAGAGAGGGGAACTCAAACTGGCTGACTTTGGTCTGGCGCGGGCTAAGTCTGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACTCTGTGGTACCGGCCTCCTGACGTCCTGCTAGGCTCCTCTGAGTACTCCACACAGATTGACATGTGGGGTGTGGGGTGTATATTTTATGAGATGGCTGCAGGTCGGCCCCTGTTTCCTGGCTCCACCGTAGAGGACGAGCTCCACCTCATATTCAGACTGCTGGgcaCGCCATCAGAGGACAGCTGGCCAGGGATCTCTGGCGTCGACGAGTTCAAATCCTACAACTTCCCCAAATACAAACCTCAGCCCTTCATCAACCATGCACCCAGGTTGGACACAGAAGGCATTGAACTGGTGTTATCGTTTCTGAAAtacGAGTCCAAGAGGAGGATCTCAGCAGATGAAGCTATGAAGCAGGCCTACTTCAAGAGCCTAGGGGCACGGGTCCACACACTGCATGAGAgTGTATCAATATTCACTCTGAAGGATATCCAACTGCAGAGAGACCCTGGCTATCGGAACTCCTCAAACCTAGAGTCAGGCAACAGCAAGAACAGAAGACAGAGCATGCTCTTCTAGACTTTCTGCTCCTGGGTGGAGCTCTTTCCTGTTGCTATAGTAACGGACTCTCGCTTGAGATGAGACTGAATGGGACAgagccccctcctccctctcgcatgagcccctcacccctcacccccccAATAGAGCGAGTGAGTCTGGAGTTGattggggagggagagatgatcTACGTTTATTTATTTGAAGATAtggaaaggggggtgggggggtatattttgctgctatactactactgtctgtatttAACACGCAGTTTGTGTATATGATGATGTGAACTCCGACACCATGCACAACCGACCAGTCGCTAAGGTTACTATTGTTATTGTAAATGATGAATTATGGTTATGATTCCACTGATGATCTCGATGTTGTTTATCATAGCTGTTACCTTTGCTGTTTTGCATGTCGTTGTGTTCAGAGACTGAATGCCTTTTTAGCATTTTTTTCCTCAAGTACTTTCTCAAGCTTCCTCTGATGGTGGTGTTTGACTGAAATGAGACCAGACCGGTCCAAactgggagagagggactggactgGGAGTGTCTGGTCCTCAACTGGAAATCTTTCCTCTGAACCGAAGCAATTCCCagcctccctctcattctccttgACCTAGAACATTCCAGAACATTTCAGGGGCCAGACGGGGCTTTAGGAAGGGGTTGAGGTGGGGCCCAGTCATTGGGAGAGCACAACAACCCTCAGAGCCAACGAATGGGACCACAGCAGAAGGTAGAGTTTGACTCCCCAGGACATTTCCGGTCTCCCTCTCCGGTTGTCATGGCAACAGGGAAGCAATGATTagggaggagagaaacacagGAGCGCCGTGACCTCCCACAGGAACTCATCagtccccctccttctcccctagATGGTCTTGACCCCAGTTCTTGTATGCAAGATCTTCATTTTCTCTTGCCTTTTGAAGGTCTACAATACTGGTTGTTTTTGTGCATCAATAACCTGTAAGCAGtttctagttttttttttaatggctcTCTACTCTGTAGCTGGCCATGGGAGTGGGGTTGTACCATGATGACTGGTGTTTAAAATGGCTGACTTGATTTGACAGTATTAAGAgatttttgttttctatgtttgaCCTCTCCTTGTGAATACAGTGTCAGTGTGGCATGTCAAGGGGCAGAAGCTCCGCCTCTCAAAGGAGAAAACATTTTGTTTCATAGTCTACATTGgacctcgagtttcttttttcaGCGTTTGTACACATTTCAAATAGACTTAACAAGCCGCGGTGTGTGTCTTCAGCCGACAGTGATGTATATTAATATTGTAATACTGTACTTTTTCAAGTTTAAAACTGATCTGAGCTTACCTGagggtgtgtgtgcgcgccagACATATGGAGCTCCTGCTGTGGTGTAAACTCAACCTCTCTGGAACACTGACAGTTGTCCTGTAATTATTTATTTCTCATAACcatcacagtaaaatgagtctgTTTGATAAGTA

Function

NR:

description
cyclin-dependent kinase 17 isoform X1

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577334.2 False 3451 mRNA 0.50 16 26266142 26301475
XM_036957469.1 False 3535 mRNA 0.50 17 26266142 26301475
XM_036957468.1 True 3169 mRNA 0.51 16 26270023 26301475

Neighbor

gene id symbol gene type direction distance location
mcm10 mcm10 coding upstream 18399 26238009 ~ 26247743 (+)
LOC110500144 optn coding upstream 28929 26228976 ~ 26237213 (+)
camk1da LOC106576188 coding upstream 48244 26148755 ~ 26217898 (+)
cdc123 LOC106576189 coding upstream 118878 26138091 ~ 26147264 (+)
il15ra LOC100136332 coding upstream 144914 26063816 ~ 26121228 (+)
LOC110500149 LOC106609287 coding downstream 15059 26316534 ~ 26324591 (+)
cep83 LOC106609290 coding downstream 23269 26324744 ~ 26333964 (+)
ncaph2 LOC106609295 coding downstream 127181 26428656 ~ 26439619 (+)
LOC110500156 LOC106609297 coding downstream 147782 26449257 ~ 26511168 (+)
LOC110500158 LOC106609299 coding downstream 218936 26520411 ~ 26618210 (+)
G1721207 NA non-coding upstream 285 26265610 ~ 26265857 (+)
G1721205 NA non-coding upstream 1873 26263972 ~ 26264269 (+)
G1721204 NA non-coding upstream 2471 26263324 ~ 26263671 (+)
G1721203 NA non-coding upstream 3107 26262676 ~ 26263035 (+)
G1721201 NA non-coding upstream 4783 26261131 ~ 26261359 (+)
G1721246 NA non-coding downstream 70357 26371832 ~ 26379091 (+)
G1721294 NA non-coding downstream 150965 26452440 ~ 26453819 (+)
G1721289 NA non-coding downstream 197315 26498790 ~ 26514372 (+)
G1721338 NA non-coding downstream 230477 26531952 ~ 26532250 (+)
G1721350 NA non-coding downstream 241944 26543419 ~ 26543829 (+)
G1721084 pfkfb3 other upstream 224299 26038302 ~ 26041843 (+)
G1720853 NA other upstream 629553 25636335 ~ 25636589 (+)
G1720836 NA other upstream 653874 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1948604 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1971345 24277797 ~ 24294858 (+)
G1722079 NA other downstream 520172 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2021045 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2040026 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2911344 29209169 ~ 29214283 (+)

Expression


Co-expression Network