ncaph2 (LOC106609295)


Basic Information

Item Value
gene id ncaph2
gene name LOC106609295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26428656 ~ 26439619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577346.2
GGCGAATAAGAACATCTCGCGCGAATATaacataaaataataaaatggtggACGCGCGGTTCTTTTGAAAGTGCTCCAAAGTTTATCATCACATATTAAATATTTGGCTCACCTTCGTATTTTGTGAATCAACGCCTACGGTGATTGGAAATCATTTGGGGAGCCATGGTCATGGACACAGTGGAGACTCGATTCGCCCATTTGTTGCAGCCTATCCGGGAGCTCACGAAAAACTGGGACATTGATGTGGCCTCGGAGTTGGCAGATTATCTAGAGGAGTTGGATGAGATGTGCATCTCGTTCGATGGGGGCAAAACCACTCTGAACTTTGCAGAGGCAGCGCTGCTCATCCAAGGCTCAGCCTGCATTTACAGCAAGAAGGTGGAGCATTTGTACAACCTGGTGTACCAAACTCTGGACTACATCAATGACAGAAACAAGAAGAAAGATAAACAAGCATTGACTTCTGGAGAGGATGGAACAGATGGGGCCTCATCCAACAATGCTAATGATGACGACAGGTTTGACTCCTTAGACCAGGATACAACAGATGTCTCCCTGCAGTCAGAGATGAAGAATGAGGCCAACACGAATGTGGACGTGGCCCCTCTTCCCCCCGAGTCTCTGATTCCTCCCGAGGCATTTGAGAAACAGAAGCTGCTTCTCGTCAGTCTGAAAGGAGAGGTGCTGGGCAGCTGTAAGGACTTTAAGATGAACACGTTCATTCCGGACTCCCTGGGTATCATCCGCCTCTTCCTGGCCTCCTCTCAGTCCCACTTCCTCAGGGATGCCCTGTCTGATGCACCCCTGGTCCCCGTCACCCTGTTCGGGCACCAAGATGACGCAGAGTTTGCAGCAGGGGATGTCGTGGCGGGCGTTACCGGGGACGATGGTGGTGATGCCGGTGCGGACAACTTTCTGCCCCTGGAGGACAACGAGATGGACCATGGACCTGAGGAACATATTGACAGACACCAGGCCCCCAGTGAAAGGAGGGTgttgagggagagggaaggagtccAGCAGCTCTCTGAGGAGGAGCAGAAGAaacagagggtggaggaggagagggctcaGATGGCAAACATGTGGAGATTACATGACCTTTATGATACAGTCGGCGAGGACAAGCCTCTGAAAACAGGAAAATGTTATAAGGTTCCTCCGGGTCTTGATGATTCTGGGAAGCGGAAAAGGAAAGGCCCCGCTGCGCTGCAAGACTTCTGGACCTGGTACACTGGCACCTATGACCCCCCTGAACCCAGGCTAAAGAATGGACCTACGTATACGGACTTGAACTACATCTATATGAGTAAAATGAAAGACAAGCTGAAGACCCGGAAAAGGATTCTTAGAAACACGggtgtgtttgtgtctgacgAGGAGCTGAAAAGGACGTACTTGCAGCTggacgagagggaggaggagttAGAGGGCCTCAGACACCACGACCCCCTAGGCCTGCACGATGACCTCTCTGACAACGAACATGACCCTTTGACTGATGAAGCCCCGGCTGACTTCCTGAATGGACAGGCTTTCATACCTGGGGCAGACATGGACGGGCTGAGTTACGAAGACCTGGTGAAGAAGAGTGTGGAGCAGTTCTTGGTGAACTCCCAGGGTTATGCCCAGGAGACAGCGCTGTCGAAAAGAGTGAAGGAATGGGAGGACAAAATACGACCGGAGCTCACCTATCAGGAGGAGCGTGCTACCTTTGACATCCATGACTATGGGGACAGGATCGTAGCCGCGTTGTGCAGTGTGGGCCAGAGGAGGACCTTCGCCTCTGTAGTCCACGGCATGGACAACTTCGAGGCCTGCAAGTACATGCTGGCTTCCCttcaactgGCCAACGATTACACAGTGGAGGTGGACAGGAGTGAGGGTCTCGAGGAAAGCATCGACACCATGGGACTCACTCTGCTCAGCAAACACCGGGCCAACCAACGATTCAAGAAAGCCCCCGCATCAACCTCCGACCCAAAAATCTCCTCAACCTGATCCAGTGGGTGTGTGAGCTCTTGCCTCCTACAGACTCAGTGGGGACTAGAGACCCATTACTCTGAAATGTGGTACACACTCCTGTGTGTGTGGCGCCACTTGTGCCTACCGGACCACTAGTACTAACCTGCTATATCAACAGGACCTGGCTGCACCCATTAACTCGCTCATGTACTTGCTCTTATTTAATTTCAATCTCCTCTCTATGGTTTTGATCTTTTGTGTCTGTGTATTCCTCTGGTTATGTCAGAGAAATAAGCTATTTTCCACcccttttttttcttccattcACCTGCATTTACACTATATTTACCAGATGTCACACTTGGggtatgttgtggtgtgttgacTGACACACATCTAAAAAAGATCACCCTTTTCACAATTTTTGGCTTTGTATCCATGACAATTGTATATGTAGCTTTTTATTTGCATGTTTGTCCAAGTAGTGTAGAACTTGTACATTTTCTATATAAAATGAGAGGACTTTTTAAGAAAAACTTGATCATTTTTCTACTTTCATTTTAAGAGAATAACCTAAATTGGGAAATTATGTTTCATTGGTTTGTaaggaaaaatgttttttactatggCCAAAAATGTGTATAAAATAAAACATGAGCATGTGGATTTTA
>XM_021577347.2
GGCGAATAAGAACATCTCGCGCGAATATaacataaaataataaaatggtggACGCGCGGTTCTTTTGAAAGTGCTCCAAAGTTTATCATCACATATTAAATATTTGGCTCACCTTCGTATTTTGTGAATCAACGCCTACGGTGATTGGAAATCATTTGGGGAGCCATGGTCATGGACACAGTGGAGACTCGATTCGCCCATTTGTTGCAGCCTATCCGGGAGCTCACGAAAAACTGGGACATTGATGTGGCCTCGGAGTTGGCAGATTATCTAGAGGAGTTGGATGAGATGTGCATCTCGTTCGATGGGGGCAAAACCACTCTGAACTTTGCAGAGGCAGCGCTGCTCATCCAAGGCTCAGCCTGCATTTACAGCAAGAAGGTGGAGCATTTGTACAACCTGGTGTACCAAACTCTGGACTACATCAATGACAGAAACAAGAAGAAAGATAAACAAGCATTGACTTCTGGAGAGGATGGAACAGATGGGGCCTCATCCAACAATGCTAATGATGACGACAGGTTTGACTCCTTAGACCAGGATACAACAGATGTCTCCCTGCAGTCAGAGATGAAGAATGAGGCCAACACGAATGTGGACGTGGCCCCTCTTCCCCCCGAGTCTCTGATTCCTCCCGAGGCATTTGAGAAACAGAAGCTGCTTCTCGTCAGTCTGAAAGGAGAGGTGCTGGGCAGCTGTAAGGACTTTAAGATGAACACGTTCATTCCGGACTCCCTGGGTATCATCCGCCTCTTCCTGGCCTCCTCTCAGTCCCACTTCCTCAGGGATGCCCTGTCTGATGCACCCCTGGTCCCCGTCACCCTGTTCGGGCACCAAGATGACGCAGAGTTTGCAGCAGGGGATGTCGTGGCGGGCGTTACCGGGGACGATGGTGGTGATGCCGGTGCGGACAACTTTCTGCCCCTGGAGGACAACGAGATGGACCATGGACCTGAGGAACATATTGACAGACACCAGGCCCCCAGTGAAAGGAGGGTgttgagggagagggaaggagtccAGCAGCTCTCTGAGGAGGAGCAGAAGAaacagagggtggaggaggagagggctcaGATGGCAAACATGTGGAGATTACATGACCTTTATGATACAGTCGGCGAGGACAAGCCTCTGAAAACAGGAAAATGTTATAAGGTTCCTCCGGGTCTTGATGATTCTGGGAAGCGGAAAAGGAAAGGCCCCGCTGCGCTGCAAGACTTCTGGACCTGGTACACTGGCACCTATGACCCCCCTGAACCCAGGCTAAAGAATGGACCTACGTATACGGACTTGAACTACATCTATATGAGTAAAATGAAAGACAAGCTGAAGACCCGGAAAAGGATTCTTAGAAACACGggtgtgtttgtgtctgacgAGGAGCTGAAAAGGACGTACTTGCAGCTggacgagagggaggaggagttAGAGGGCCTCAGACACCACGACCCCCTAGGCCTGCACGATGACCTCTCTGACAACGAACATGACCCTTTGACTGATGAAGCCCCGGCTGACTTCCTGAATGGACAGGCTTTCATACCTGACATGGACGGGCTGAGTTACGAAGACCTGGTGAAGAAGAGTGTGGAGCAGTTCTTGGTGAACTCCCAGGGTTATGCCCAGGAGACAGCGCTGTCGAAAAGAGTGAAGGAATGGGAGGACAAAATACGACCGGAGCTCACCTATCAGGAGGAGCGTGCTACCTTTGACATCCATGACTATGGGGACAGGATCGTAGCCGCGTTGTGCAGTGTGGGCCAGAGGAGGACCTTCGCCTCTGTAGTCCACGGCATGGACAACTTCGAGGCCTGCAAGTACATGCTGGCTTCCCttcaactgGCCAACGATTACACAGTGGAGGTGGACAGGAGTGAGGGTCTCGAGGAAAGCATCGACACCATGGGACTCACTCTGCTCAGCAAACACCGGGCCAACCAACGATTCAAGAAAGCCCCCGCATCAACCTCCGACCCAAAAATCTCCTCAACCTGATCCAGTGGGTGTGTGAGCTCTTGCCTCCTACAGACTCAGTGGGGACTAGAGACCCATTACTCTGAAATGTGGTACACACTCCTGTGTGTGTGGCGCCACTTGTGCCTACCGGACCACTAGTACTAACCTGCTATATCAACAGGACCTGGCTGCACCCATTAACTCGCTCATGTACTTGCTCTTATTTAATTTCAATCTCCTCTCTATGGTTTTGATCTTTTGTGTCTGTGTATTCCTCTGGTTATGTCAGAGAAATAAGCTATTTTCCACcccttttttttcttccattcACCTGCATTTACACTATATTTACCAGATGTCACACTTGGggtatgttgtggtgtgttgacTGACACACATCTAAAAAAGATCACCCTTTTCACAATTTTTGGCTTTGTATCCATGACAATTGTATATGTAGCTTTTTATTTGCATGTTTGTCCAAGTAGTGTAGAACTTGTACATTTTCTATATAAAATGAGAGGACTTTTTAAGAAAAACTTGATCATTTTTCTACTTTCATTTTAAGAGAATAACCTAAATTGGGAAATTATGTTTCATTGGTTTGTaaggaaaaatgttttttactatggCCAAAAATGTGTATAAAATAAAACATGAGCATGTGGATTTTA

Function

NR:

description
condensin-2 complex subunit H2-like isoform X2

GO: NA

KEGG:

id description
K11490 NCAPH2; condensin-2 complex subunit H2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577346.2 False 2639 mRNA 0.49 19 26428656 26439619
XM_021577347.2 True 2633 mRNA 0.48 19 26428656 26439619

Neighbor

gene id symbol gene type direction distance location
cep83 LOC106609290 coding upstream 94692 26324744 ~ 26333964 (+)
LOC110500149 LOC106609287 coding upstream 104065 26316534 ~ 26324591 (+)
LOC110500147 LOC106609285 coding upstream 127181 26266142 ~ 26301475 (+)
mcm10 mcm10 coding upstream 180913 26238009 ~ 26247743 (+)
LOC110500144 optn coding upstream 191443 26228976 ~ 26237213 (+)
LOC110500156 LOC106609297 coding downstream 9638 26449257 ~ 26511168 (+)
LOC110500158 LOC106609299 coding downstream 80792 26520411 ~ 26618210 (+)
kcnd2 LOC106609300 coding downstream 422677 26862296 ~ 27012894 (+)
LOC110500161 LOC106609303 coding downstream 608344 27047963 ~ 27060560 (+)
cped1 LOC106609304 coding downstream 627319 27066938 ~ 27150379 (+)
G1721246 NA non-coding upstream 49565 26371832 ~ 26379091 (+)
G1721207 NA non-coding upstream 162799 26265610 ~ 26265857 (+)
G1721205 NA non-coding upstream 164387 26263972 ~ 26264269 (+)
G1721204 NA non-coding upstream 164985 26263324 ~ 26263671 (+)
G1721203 NA non-coding upstream 165621 26262676 ~ 26263035 (+)
G1721294 NA non-coding downstream 12821 26452440 ~ 26453819 (+)
G1721289 NA non-coding downstream 59171 26498790 ~ 26514372 (+)
G1721338 NA non-coding downstream 92333 26531952 ~ 26532250 (+)
G1721350 NA non-coding downstream 103800 26543419 ~ 26543829 (+)
G1721900 NA non-coding downstream 256492 26696111 ~ 26749099 (+)
G1721084 pfkfb3 other upstream 386813 26038302 ~ 26041843 (+)
G1720853 NA other upstream 792067 25636335 ~ 25636589 (+)
G1720836 NA other upstream 816388 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 2111118 24315919 ~ 24321712 (+)
G1722079 NA other downstream 382028 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 1882901 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1901882 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2773200 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2818641 29256778 ~ 29259929 (+)

Expression


Co-expression Network